data_9ESD
#
_model_server_result.job_id            Y0cwneDsKSErJBDQPFMzew 
_model_server_result.datetime_utc      '2025-06-25 01:44:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9esd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":402}' 
#
_entry.id    9ESD 
#
_exptl.entry_id    9ESD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.38 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R})-1-cyclohexyl-2-[(5~{S})-5~{H}-imidazo[1,5-b]isoindol-5-yl]ethanol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9ESD 
_cell.length_a            143.736 
_cell.length_b            143.736 
_cell.length_c            141.218 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9ESD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 290 A HIS 312 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc2 E FE HEM . A HEM 401 1_555 F NAP 5PK . A 5PK 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc3 B NE2 HIS 290 B HIS 312 1_555 G FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc4 G FE HEM . B HEM 401 1_555 H NAP 5PK . B 5PK 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc5 C NE2 HIS 290 C HIS 312 1_555 I FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc6 I FE HEM . C HEM 401 1_555 J NAP 5PK . C 5PK 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc7 D NE2 HIS 290 D HIS 312 1_555 K FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc8 K FE HEM . D HEM 401 1_555 L NAP 5PK . D 5PK 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
#
_chem_comp.formula           'C18 H22 N2 O' 
_chem_comp.formula_weight    282.38 
_chem_comp.id                5PK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R})-1-cyclohexyl-2-[(5~{S})-5~{H}-imidazo[1,5-b]isoindol-5-yl]ethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAU CAT 5PK doub 1 n y 
CAU CAL 5PK sing 2 n y 
CAT CAS 5PK sing 3 n y 
CAO CAM 5PK doub 4 n y 
CAO NAP 5PK sing 5 n y 
CAL CAM 5PK sing 6 n n 
CAL CAK 5PK doub 7 n y 
CAM NAN 5PK sing 8 n y 
NAP CAQ 5PK doub 9 n y 
CAS CAR 5PK doub 10 n y 
CAK CAR 5PK sing 11 n y 
CAK CAJ 5PK sing 12 n n 
NAN CAQ 5PK sing 13 n y 
NAN CAJ 5PK sing 14 n n 
CAJ CAH 5PK sing 15 n n 
CAH CAG 5PK sing 16 n n 
OAI CAG 5PK sing 17 n n 
CAG CAB 5PK sing 18 n n 
CAC CAB 5PK sing 19 n n 
CAC CAD 5PK sing 20 n n 
CAB CAA 5PK sing 21 n n 
CAD CAE 5PK sing 22 n n 
CAA CAF 5PK sing 23 n n 
CAE CAF 5PK sing 24 n n 
CAA H1 5PK sing 25 n n 
CAA H2 5PK sing 26 n n 
CAF H3 5PK sing 27 n n 
CAF H4 5PK sing 28 n n 
CAE H5 5PK sing 29 n n 
CAE H6 5PK sing 30 n n 
CAD H7 5PK sing 31 n n 
CAD H8 5PK sing 32 n n 
CAC H9 5PK sing 33 n n 
CAC H10 5PK sing 34 n n 
CAB H11 5PK sing 35 n n 
CAG H12 5PK sing 36 n n 
OAI H13 5PK sing 37 n n 
CAH H14 5PK sing 38 n n 
CAH H15 5PK sing 39 n n 
CAJ H16 5PK sing 40 n n 
CAR H17 5PK sing 41 n n 
CAS H18 5PK sing 42 n n 
CAT H19 5PK sing 43 n n 
CAU H20 5PK sing 44 n n 
CAQ H21 5PK sing 45 n n 
CAO H22 5PK sing 46 n n 
#
_atom_sites.entry_id                     9ESD 
_atom_sites.fract_transf_matrix[1][1]    0.006957 
_atom_sites.fract_transf_matrix[1][2]    0.004017 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 5PK A 1 402 410 5PK DRG . 
G 2 HEM B 1 401 401 HEM HEM . 
H 3 5PK B 1 402 410 5PK DRG . 
I 2 HEM C 1 401 401 HEM HEM . 
J 3 5PK C 1 402 410 5PK DRG . 
K 2 HEM D 1 401 401 HEM HEM . 
L 3 5PK D 1 402 410 5PK DRG . 
M 4 HOH A 1 501 28 HOH HOH . 
M 4 HOH A 2 502 24 HOH HOH . 
M 4 HOH A 3 503 14 HOH HOH . 
M 4 HOH A 4 504 32 HOH HOH . 
M 4 HOH A 5 505 7 HOH HOH . 
M 4 HOH A 6 506 42 HOH HOH . 
M 4 HOH A 7 507 30 HOH HOH . 
M 4 HOH A 8 508 21 HOH HOH . 
M 4 HOH A 9 509 36 HOH HOH . 
M 4 HOH A 10 510 63 HOH HOH . 
M 4 HOH A 11 511 4 HOH HOH . 
M 4 HOH A 12 512 5 HOH HOH . 
N 4 HOH B 1 501 16 HOH HOH . 
N 4 HOH B 2 502 51 HOH HOH . 
N 4 HOH B 3 503 52 HOH HOH . 
N 4 HOH B 4 504 37 HOH HOH . 
N 4 HOH B 5 505 15 HOH HOH . 
N 4 HOH B 6 506 2 HOH HOH . 
N 4 HOH B 7 507 34 HOH HOH . 
N 4 HOH B 8 508 27 HOH HOH . 
N 4 HOH B 9 509 55 HOH HOH . 
N 4 HOH B 10 510 39 HOH HOH . 
N 4 HOH B 11 511 3 HOH HOH . 
N 4 HOH B 12 512 13 HOH HOH . 
N 4 HOH B 13 513 9 HOH HOH . 
O 4 HOH C 1 501 58 HOH HOH . 
O 4 HOH C 2 502 38 HOH HOH . 
O 4 HOH C 3 503 23 HOH HOH . 
O 4 HOH C 4 504 59 HOH HOH . 
O 4 HOH C 5 505 20 HOH HOH . 
O 4 HOH C 6 506 17 HOH HOH . 
O 4 HOH C 7 507 50 HOH HOH . 
O 4 HOH C 8 508 62 HOH HOH . 
O 4 HOH C 9 509 26 HOH HOH . 
O 4 HOH C 10 510 49 HOH HOH . 
O 4 HOH C 11 511 60 HOH HOH . 
O 4 HOH C 12 512 54 HOH HOH . 
O 4 HOH C 13 513 25 HOH HOH . 
O 4 HOH C 14 514 41 HOH HOH . 
O 4 HOH C 15 515 18 HOH HOH . 
O 4 HOH C 16 516 8 HOH HOH . 
O 4 HOH C 17 517 11 HOH HOH . 
P 4 HOH D 1 501 56 HOH HOH . 
P 4 HOH D 2 502 22 HOH HOH . 
P 4 HOH D 3 503 43 HOH HOH . 
P 4 HOH D 4 504 57 HOH HOH . 
P 4 HOH D 5 505 35 HOH HOH . 
P 4 HOH D 6 506 29 HOH HOH . 
P 4 HOH D 7 507 33 HOH HOH . 
P 4 HOH D 8 508 61 HOH HOH . 
P 4 HOH D 9 509 40 HOH HOH . 
P 4 HOH D 10 510 53 HOH HOH . 
P 4 HOH D 11 511 31 HOH HOH . 
P 4 HOH D 12 512 6 HOH HOH . 
P 4 HOH D 13 513 1 HOH HOH . 
P 4 HOH D 14 514 10 HOH HOH . 
P 4 HOH D 15 515 44 HOH HOH . 
P 4 HOH D 16 516 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 5PK . . . J 3 -67.145 22.098 14.146 1 60.81 ? CAA 5PK 402 C 1 
HETATM 2 C CAF 5PK . . . J 3 -68.538 22.179 13.431 1 61.14 ? CAF 5PK 402 C 1 
HETATM 3 C CAE 5PK . . . J 3 -68.837 20.945 12.5 1 60.94 ? CAE 5PK 402 C 1 
HETATM 4 C CAD 5PK . . . J 3 -67.805 19.804 12.708 1 60.75 ? CAD 5PK 402 C 1 
HETATM 5 C CAC 5PK . . . J 3 -66.312 20.299 12.609 1 60.55 ? CAC 5PK 402 C 1 
HETATM 6 C CAB 5PK . . . J 3 -66.069 21.754 13.119 1 60.04 ? CAB 5PK 402 C 1 
HETATM 7 C CAG 5PK . . . J 3 -64.647 21.948 13.68 1 58.68 ? CAG 5PK 402 C 1 
HETATM 8 O OAI 5PK . . . J 3 -63.748 21.68 12.575 1 58.91 ? OAI 5PK 402 C 1 
HETATM 9 C CAH 5PK . . . J 3 -64.304 20.972 14.817 1 56.89 ? CAH 5PK 402 C 1 
HETATM 10 C CAJ 5PK . . . J 3 -62.922 21.289 15.448 1 55.41 ? CAJ 5PK 402 C 1 
HETATM 11 C CAK 5PK . . . J 3 -63.066 22.23 16.515 1 54.72 ? CAK 5PK 402 C 1 
HETATM 12 C CAR 5PK . . . J 3 -63.387 23.532 16.508 1 54.49 ? CAR 5PK 402 C 1 
HETATM 13 C CAS 5PK . . . J 3 -63.488 24.274 17.684 1 54.34 ? CAS 5PK 402 C 1 
HETATM 14 C CAT 5PK . . . J 3 -63.239 23.634 18.896 1 54.3 ? CAT 5PK 402 C 1 
HETATM 15 C CAU 5PK . . . J 3 -62.903 22.285 18.866 1 54.11 ? CAU 5PK 402 C 1 
HETATM 16 C CAL 5PK . . . J 3 -62.821 21.627 17.704 1 54.38 ? CAL 5PK 402 C 1 
HETATM 17 C CAM 5PK . . . J 3 -62.473 20.356 17.503 1 54.51 ? CAM 5PK 402 C 1 
HETATM 18 N NAN 5PK . . . J 3 -62.488 20.097 16.202 1 54.84 ? NAN 5PK 402 C 1 
HETATM 19 C CAQ 5PK . . . J 3 -62.124 18.83 16.015 1 54.25 ? CAQ 5PK 402 C 1 
HETATM 20 N NAP 5PK . . . J 3 -61.863 18.309 17.202 1 54.33 ? NAP 5PK 402 C 1 
HETATM 21 C CAO 5PK . . . J 3 -62.073 19.247 18.121 1 54.28 ? CAO 5PK 402 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#