data_9ESF # _model_server_result.job_id -POf3AcVJxq24zlvjtNMcQ _model_server_result.datetime_utc '2025-07-21 08:47:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9esf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 9ESF # _exptl.entry_id 9ESF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9ESF _cell.length_a 143.773 _cell.length_b 143.773 _cell.length_c 141.864 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ESF _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 290 A HIS 312 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 E FE HEM . A HEM 401 1_555 F N2 A1H6U . A A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 B NE2 HIS 290 B HIS 312 1_555 G FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 G FE HEM . B HEM 401 1_555 H N2 A1H6U . B A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 C NE2 HIS 290 C HIS 312 1_555 I FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 I FE HEM . C HEM 401 1_555 J N2 A1H6U . C A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 D NE2 HIS 290 D HIS 312 1_555 K FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 K FE HEM . D HEM 401 1_555 L N2 A1H6U . D A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 166 n n CHA C4D HEM doub 167 n n CHA HHA HEM sing 168 n n CHB C4A HEM sing 169 n n CHB C1B HEM doub 170 n n CHB HHB HEM sing 171 n n CHC C4B HEM sing 172 n n CHC C1C HEM doub 173 n n CHC HHC HEM sing 174 n n CHD C4C HEM doub 175 n n CHD C1D HEM sing 176 n n CHD HHD HEM sing 177 n n C1A C2A HEM doub 178 n y C1A NA HEM sing 179 n y C2A C3A HEM sing 180 n y C2A CAA HEM sing 181 n n C3A C4A HEM doub 182 n y C3A CMA HEM sing 183 n n C4A NA HEM sing 184 n y CMA HMA HEM sing 185 n n CMA HMAA HEM sing 186 n n CMA HMAB HEM sing 187 n n CAA CBA HEM sing 188 n n CAA HAA HEM sing 189 n n CAA HAAA HEM sing 190 n n CBA CGA HEM sing 191 n n CBA HBA HEM sing 192 n n CBA HBAA HEM sing 193 n n CGA O1A HEM doub 194 n n CGA O2A HEM sing 195 n n C1B C2B HEM sing 196 n n C1B NB HEM sing 197 n n C2B C3B HEM doub 198 n n C2B CMB HEM sing 199 n n C3B C4B HEM sing 200 n n C3B CAB HEM sing 201 n n C4B NB HEM doub 202 n n CMB HMB HEM sing 203 n n CMB HMBA HEM sing 204 n n CMB HMBB HEM sing 205 n n CAB CBB HEM doub 206 n n CAB HAB HEM sing 207 n n CBB HBB HEM sing 208 n n CBB HBBA HEM sing 209 n n C1C C2C HEM sing 210 n y C1C NC HEM sing 211 n y C2C C3C HEM doub 212 n y C2C CMC HEM sing 213 n n C3C C4C HEM sing 214 n y C3C CAC HEM sing 215 n n C4C NC HEM sing 216 n y CMC HMC HEM sing 217 n n CMC HMCA HEM sing 218 n n CMC HMCB HEM sing 219 n n CAC CBC HEM doub 220 n n CAC HAC HEM sing 221 n n CBC HBC HEM sing 222 n n CBC HBCA HEM sing 223 n n C1D C2D HEM sing 224 n n C1D ND HEM doub 225 n n C2D C3D HEM doub 226 n n C2D CMD HEM sing 227 n n C3D C4D HEM sing 228 n n C3D CAD HEM sing 229 n n C4D ND HEM sing 230 n n CMD HMD HEM sing 231 n n CMD HMDA HEM sing 232 n n CMD HMDB HEM sing 233 n n CAD CBD HEM sing 234 n n CAD HAD HEM sing 235 n n CAD HADA HEM sing 236 n n CBD CGD HEM sing 237 n n CBD HBD HEM sing 238 n n CBD HBDA HEM sing 239 n n CGD O1D HEM doub 240 n n CGD O2D HEM sing 241 n n O2A H2A HEM sing 242 n n O2D H2D HEM sing 243 n n FE NA HEM sing 244 n n FE NB HEM sing 245 n n FE NC HEM sing 246 n n FE ND HEM sing 247 n n # _atom_sites.entry_id 9ESF _atom_sites.fract_transf_matrix[1][1] 0.006955 _atom_sites.fract_transf_matrix[1][2] 0.004016 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 A1H6U A 1 402 1 A1H6U LIG . G 2 HEM B 1 401 401 HEM HEM . H 3 A1H6U B 1 402 1 A1H6U LIG . I 2 HEM C 1 401 401 HEM HEM . J 3 A1H6U C 1 402 1 A1H6U LIG . K 2 HEM D 1 401 401 HEM HEM . L 3 A1H6U D 1 402 1 A1H6U LIG . M 4 HOH A 1 501 7 HOH HOH . M 4 HOH A 2 502 4 HOH HOH . M 4 HOH A 3 503 13 HOH HOH . N 4 HOH B 1 501 2 HOH HOH . O 4 HOH D 1 501 12 HOH HOH . O 4 HOH D 2 502 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 59.396 68.886 20.528 1 51.97 ? CHA HEM 401 B 1 HETATM 2 C CHB HEM . . . G 2 60.392 73.542 21.492 1 51.36 ? CHB HEM 401 B 1 HETATM 3 C CHC HEM . . . G 2 59.79 72.728 26.256 1 50.64 ? CHC HEM 401 B 1 HETATM 4 C CHD HEM . . . G 2 58.97 68.055 25.288 1 51.04 ? CHD HEM 401 B 1 HETATM 5 C C1A HEM . . . G 2 59.767 70.246 20.362 1 52.05 ? C1A HEM 401 B 1 HETATM 6 C C2A HEM . . . G 2 59.99 70.891 19.078 1 52.64 ? C2A HEM 401 B 1 HETATM 7 C C3A HEM . . . G 2 60.261 72.219 19.347 1 52.09 ? C3A HEM 401 B 1 HETATM 8 C C4A HEM . . . G 2 60.208 72.364 20.791 1 51.65 ? C4A HEM 401 B 1 HETATM 9 C CMA HEM . . . G 2 60.534 73.324 18.371 1 52.07 ? CMA HEM 401 B 1 HETATM 10 C CAA HEM . . . G 2 59.916 70.257 17.716 1 54.07 ? CAA HEM 401 B 1 HETATM 11 C CBA HEM . . . G 2 61.092 69.337 17.399 1 55.36 ? CBA HEM 401 B 1 HETATM 12 C CGA HEM . . . G 2 62.348 70.053 16.984 1 56.11 ? CGA HEM 401 B 1 HETATM 13 O O1A HEM . . . G 2 63.397 69.944 17.599 1 56.48 ? O1A HEM 401 B 1 HETATM 14 O O2A HEM . . . G 2 62.219 70.78 15.889 1 56.06 ? O2A HEM 401 B 1 HETATM 15 C C1B HEM . . . G 2 60.307 73.744 22.897 1 50.9 ? C1B HEM 401 B 1 HETATM 16 C C2B HEM . . . G 2 60.501 75.024 23.553 1 50.54 ? C2B HEM 401 B 1 HETATM 17 C C3B HEM . . . G 2 60.352 74.772 24.899 1 50.74 ? C3B HEM 401 B 1 HETATM 18 C C4B HEM . . . G 2 60.052 73.379 25.053 1 50.77 ? C4B HEM 401 B 1 HETATM 19 C CMB HEM . . . G 2 60.755 76.327 22.855 1 50.13 ? CMB HEM 401 B 1 HETATM 20 C CAB HEM . . . G 2 60.501 75.723 26.005 1 50.7 ? CAB HEM 401 B 1 HETATM 21 C CBB HEM . . . G 2 61.538 76.469 26.324 1 50.36 ? CBB HEM 401 B 1 HETATM 22 C C1C HEM . . . G 2 59.465 71.352 26.41 1 50.67 ? C1C HEM 401 B 1 HETATM 23 C C2C HEM . . . G 2 59.195 70.698 27.686 1 50.93 ? C2C HEM 401 B 1 HETATM 24 C C3C HEM . . . G 2 58.987 69.368 27.379 1 50.93 ? C3C HEM 401 B 1 HETATM 25 C C4C HEM . . . G 2 59.12 69.234 25.969 1 50.7 ? C4C HEM 401 B 1 HETATM 26 C CMC HEM . . . G 2 59.186 71.37 29.027 1 50.72 ? CMC HEM 401 B 1 HETATM 27 C CAC HEM . . . G 2 58.695 68.263 28.295 1 51.03 ? CAC HEM 401 B 1 HETATM 28 C CBC HEM . . . G 2 59.479 67.29 28.676 1 51.11 ? CBC HEM 401 B 1 HETATM 29 C C1D HEM . . . G 2 59.012 67.864 23.898 1 51.27 ? C1D HEM 401 B 1 HETATM 30 C C2D HEM . . . G 2 58.593 66.643 23.244 1 51.44 ? C2D HEM 401 B 1 HETATM 31 C C3D HEM . . . G 2 58.65 66.89 21.886 1 51.56 ? C3D HEM 401 B 1 HETATM 32 C C4D HEM . . . G 2 59.156 68.247 21.736 1 51.66 ? C4D HEM 401 B 1 HETATM 33 C CMD HEM . . . G 2 58.245 65.365 23.942 1 51.41 ? CMD HEM 401 B 1 HETATM 34 C CAD HEM . . . G 2 58.149 65.974 20.804 1 51.58 ? CAD HEM 401 B 1 HETATM 35 C CBD HEM . . . G 2 56.653 66.135 20.574 1 52.04 ? CBD HEM 401 B 1 HETATM 36 C CGD HEM . . . G 2 56.013 65.15 19.634 1 52.68 ? CGD HEM 401 B 1 HETATM 37 O O1D HEM . . . G 2 54.814 65.194 19.393 1 52.74 ? O1D HEM 401 B 1 HETATM 38 O O2D HEM . . . G 2 56.819 64.251 19.088 1 52.99 ? O2D HEM 401 B 1 HETATM 39 N NA HEM . . . G 2 59.91 71.143 21.376 1 51.47 ? NA HEM 401 B 1 HETATM 40 N NB HEM . . . G 2 60.033 72.769 23.802 1 50.6 ? NB HEM 401 B 1 HETATM 41 N NC HEM . . . G 2 59.409 70.46 25.387 1 50.46 ? NC HEM 401 B 1 HETATM 42 N ND HEM . . . G 2 59.363 68.817 22.987 1 51.02 ? ND HEM 401 B 1 HETATM 43 FE FE HEM . . . G 2 59.539 70.827 23.368 1 50.32 ? FE HEM 401 B 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #