data_9ESF # _model_server_result.job_id UPWuL2dKDQUHNpl_chZcKg _model_server_result.datetime_utc '2025-07-21 09:06:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9esf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 9ESF # _exptl.entry_id 9ESF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.306 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (~{S})-cyclohexyl(imidazo[1,5-a]pyridin-5-yl)methanol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9ESF _cell.length_a 143.773 _cell.length_b 143.773 _cell.length_c 141.864 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ESF _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 290 A HIS 312 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 E FE HEM . A HEM 401 1_555 F N2 A1H6U . A A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 B NE2 HIS 290 B HIS 312 1_555 G FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 G FE HEM . B HEM 401 1_555 H N2 A1H6U . B A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 C NE2 HIS 290 C HIS 312 1_555 I FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 I FE HEM . C HEM 401 1_555 J N2 A1H6U . C A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 D NE2 HIS 290 D HIS 312 1_555 K FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 K FE HEM . D HEM 401 1_555 L N2 A1H6U . D A1H6U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'C14 H18 N2 O' _chem_comp.formula_weight 230.306 _chem_comp.id A1H6U _chem_comp.mon_nstd_flag . _chem_comp.name (~{S})-cyclohexyl(imidazo[1,5-a]pyridin-5-yl)methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C1 A1H6U sing 1 n n C1 CA A1H6U sing 2 n n CA N A1H6U sing 3 n y N C3 A1H6U sing 4 n y C3 CG2 A1H6U sing 5 n y CG2 C5 A1H6U doub 6 n y C5 C6 A1H6U sing 7 n y C3 C7 A1H6U doub 8 n y C7 N2 A1H6U sing 9 n y N2 C8 A1H6U doub 10 n y C1 C9 A1H6U sing 11 n n C9 CD1 A1H6U sing 12 n n CD1 CG1 A1H6U sing 13 n n CG1 C12 A1H6U sing 14 n n C12 C13 A1H6U sing 15 n n C13 C14 A1H6U sing 16 n n CA C6 A1H6U doub 17 n y C8 N A1H6U sing 18 n y C14 C9 A1H6U sing 19 n n C5 H4 A1H6U sing 20 n n C6 H5 A1H6U sing 21 n n C7 H6 A1H6U sing 22 n n C8 H7 A1H6U sing 23 n n C13 H16 A1H6U sing 24 n n C13 H15 A1H6U sing 25 n n O H1 A1H6U sing 26 n n C1 H2 A1H6U sing 27 n n CG2 H3 A1H6U sing 28 n n C9 H8 A1H6U sing 29 n n CD1 H10 A1H6U sing 30 n n CD1 H9 A1H6U sing 31 n n CG1 H12 A1H6U sing 32 n n CG1 H11 A1H6U sing 33 n n C12 H13 A1H6U sing 34 n n C12 H14 A1H6U sing 35 n n C14 H18 A1H6U sing 36 n n C14 H17 A1H6U sing 37 n n # _atom_sites.entry_id 9ESF _atom_sites.fract_transf_matrix[1][1] 0.006955 _atom_sites.fract_transf_matrix[1][2] 0.004016 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 A1H6U A 1 402 1 A1H6U LIG . G 2 HEM B 1 401 401 HEM HEM . H 3 A1H6U B 1 402 1 A1H6U LIG . I 2 HEM C 1 401 401 HEM HEM . J 3 A1H6U C 1 402 1 A1H6U LIG . K 2 HEM D 1 401 401 HEM HEM . L 3 A1H6U D 1 402 1 A1H6U LIG . M 4 HOH A 1 501 7 HOH HOH . M 4 HOH A 2 502 4 HOH HOH . M 4 HOH A 3 503 13 HOH HOH . N 4 HOH B 1 501 2 HOH HOH . O 4 HOH D 1 501 12 HOH HOH . O 4 HOH D 2 502 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 A1H6U . . . J 3 59.872 58.181 54.387 1 54.03 ? C5 A1H6U 402 C 1 HETATM 2 C C6 A1H6U . . . J 3 59.68 58.07 55.806 1 54.12 ? C6 A1H6U 402 C 1 HETATM 3 C C7 A1H6U . . . J 3 57.745 61.196 54.019 1 54.72 ? C7 A1H6U 402 C 1 HETATM 4 C C8 A1H6U . . . J 3 57.453 60.948 56.106 1 54.84 ? C8 A1H6U 402 C 1 HETATM 5 C C13 A1H6U . . . J 3 54.943 56.745 57.348 1 53.9 ? C13 A1H6U 402 C 1 HETATM 6 O O A1H6U . . . J 3 58.755 59.57 58.62 1 54.19 ? O A1H6U 402 C 1 HETATM 7 C C1 A1H6U . . . J 3 58.324 58.51 57.792 1 53.86 ? C1 A1H6U 402 C 1 HETATM 8 C CA A1H6U . . . J 3 58.753 58.825 56.404 1 54.25 ? CA A1H6U 402 C 1 HETATM 9 N N A1H6U . . . J 3 58.212 59.881 55.703 1 54.59 ? N A1H6U 402 C 1 HETATM 10 C C3 A1H6U . . . J 3 58.401 60.034 54.359 1 54.43 ? C3 A1H6U 402 C 1 HETATM 11 C CG2 A1H6U . . . J 3 59.175 59.076 53.68 1 54.05 ? CG2 A1H6U 402 C 1 HETATM 12 N N2 A1H6U . . . J 3 57.147 61.76 55.115 1 54.76 ? N2 A1H6U 402 C 1 HETATM 13 C C9 A1H6U . . . J 3 56.838 58.289 57.98 1 53.6 ? C9 A1H6U 402 C 1 HETATM 14 C CD1 A1H6U . . . J 3 56.534 57.994 59.446 1 53.47 ? CD1 A1H6U 402 C 1 HETATM 15 C CG1 A1H6U . . . J 3 55.144 57.446 59.712 1 53.45 ? CG1 A1H6U 402 C 1 HETATM 16 C C12 A1H6U . . . J 3 54.794 56.293 58.791 1 53.76 ? C12 A1H6U 402 C 1 HETATM 17 C C14 A1H6U . . . J 3 56.375 57.165 57.065 1 53.62 ? C14 A1H6U 402 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 905 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #