data_9ETV # _model_server_result.job_id gSpm0BWCYXPWrzoHp0oSQA _model_server_result.datetime_utc '2025-07-27 10:41:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9etv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9ETV # _exptl.entry_id 9ETV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9ETV _cell.length_a 113.382 _cell.length_b 113.382 _cell.length_c 213.926 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ETV _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -56.691 -98.191692 0 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 71.308667 4 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -56.691 -98.191692 71.308667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 290 A HIS 312 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 B FE HEM . A HEM 401 1_555 C N A1H61 . A A1H61 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 148 n n CHA C4D HEM doub 149 n n CHA HHA HEM sing 150 n n CHB C4A HEM sing 151 n n CHB C1B HEM doub 152 n n CHB HHB HEM sing 153 n n CHC C4B HEM sing 154 n n CHC C1C HEM doub 155 n n CHC HHC HEM sing 156 n n CHD C4C HEM doub 157 n n CHD C1D HEM sing 158 n n CHD HHD HEM sing 159 n n C1A C2A HEM doub 160 n y C1A NA HEM sing 161 n y C2A C3A HEM sing 162 n y C2A CAA HEM sing 163 n n C3A C4A HEM doub 164 n y C3A CMA HEM sing 165 n n C4A NA HEM sing 166 n y CMA HMA HEM sing 167 n n CMA HMAA HEM sing 168 n n CMA HMAB HEM sing 169 n n CAA CBA HEM sing 170 n n CAA HAA HEM sing 171 n n CAA HAAA HEM sing 172 n n CBA CGA HEM sing 173 n n CBA HBA HEM sing 174 n n CBA HBAA HEM sing 175 n n CGA O1A HEM doub 176 n n CGA O2A HEM sing 177 n n C1B C2B HEM sing 178 n n C1B NB HEM sing 179 n n C2B C3B HEM doub 180 n n C2B CMB HEM sing 181 n n C3B C4B HEM sing 182 n n C3B CAB HEM sing 183 n n C4B NB HEM doub 184 n n CMB HMB HEM sing 185 n n CMB HMBA HEM sing 186 n n CMB HMBB HEM sing 187 n n CAB CBB HEM doub 188 n n CAB HAB HEM sing 189 n n CBB HBB HEM sing 190 n n CBB HBBA HEM sing 191 n n C1C C2C HEM sing 192 n y C1C NC HEM sing 193 n y C2C C3C HEM doub 194 n y C2C CMC HEM sing 195 n n C3C C4C HEM sing 196 n y C3C CAC HEM sing 197 n n C4C NC HEM sing 198 n y CMC HMC HEM sing 199 n n CMC HMCA HEM sing 200 n n CMC HMCB HEM sing 201 n n CAC CBC HEM doub 202 n n CAC HAC HEM sing 203 n n CBC HBC HEM sing 204 n n CBC HBCA HEM sing 205 n n C1D C2D HEM sing 206 n n C1D ND HEM doub 207 n n C2D C3D HEM doub 208 n n C2D CMD HEM sing 209 n n C3D C4D HEM sing 210 n n C3D CAD HEM sing 211 n n C4D ND HEM sing 212 n n CMD HMD HEM sing 213 n n CMD HMDA HEM sing 214 n n CMD HMDB HEM sing 215 n n CAD CBD HEM sing 216 n n CAD HAD HEM sing 217 n n CAD HADA HEM sing 218 n n CBD CGD HEM sing 219 n n CBD HBD HEM sing 220 n n CBD HBDA HEM sing 221 n n CGD O1D HEM doub 222 n n CGD O2D HEM sing 223 n n O2A H2A HEM sing 224 n n O2D H2D HEM sing 225 n n FE NA HEM sing 226 n n FE NB HEM sing 227 n n FE NC HEM sing 228 n n FE ND HEM sing 229 n n # _atom_sites.entry_id 9ETV _atom_sites.fract_transf_matrix[1][1] 0.00882 _atom_sites.fract_transf_matrix[1][2] 0.005092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 401 HEM HEM . C 3 A1H61 A 1 402 1 A1H61 DRG . D 4 HOH A 1 501 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -44.4 -44.116 17.15 1 71.03 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . B 2 -45.78 -48.556 18.527 1 70.37 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . B 2 -44.891 -47.5 23.188 1 69.99 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . B 2 -43.7 -43.001 21.83 1 70.49 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . B 2 -44.924 -45.432 17.117 1 71.19 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . B 2 -45.323 -46.135 15.909 1 72.44 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . B 2 -45.68 -47.412 16.296 1 71.54 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . B 2 -45.52 -47.461 17.734 1 70.7 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . B 2 -46.105 -48.56 15.43 1 71.27 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . B 2 -45.411 -45.589 14.507 1 73.98 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . B 2 -46.627 -44.693 14.306 1 75.55 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . B 2 -47.876 -45.201 14.97 1 77.06 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . B 2 -48.537 -46.137 14.55 1 77.76 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . B 2 -48.17 -44.553 16.062 1 77.43 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . B 2 -45.672 -48.669 19.929 1 69.85 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . B 2 -45.97 -49.879 20.673 1 69.69 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . B 2 -45.669 -49.581 21.989 1 69.65 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . B 2 -45.233 -48.214 22.042 1 69.9 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . B 2 -46.494 -51.154 20.079 1 69.48 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . B 2 -45.694 -50.506 23.123 1 69.35 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . B 2 -46.68 -51.231 23.585 1 69.35 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . B 2 -44.444 -46.148 23.236 1 70.37 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . B 2 -44.078 -45.43 24.451 1 70.82 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . B 2 -43.748 -44.158 24.039 1 70.7 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . B 2 -43.903 -44.112 22.619 1 70.56 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . B 2 -44.082 -46.002 25.84 1 70.96 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . B 2 -43.355 -43.033 24.89 1 70.91 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . B 2 -44.021 -41.923 25.154 1 70.89 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . B 2 -43.8 -42.897 20.424 1 70.54 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . B 2 -43.323 -41.753 19.668 1 70.7 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . B 2 -43.422 -42.1 18.333 1 70.87 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . B 2 -44.03 -43.422 18.298 1 70.84 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . B 2 -42.851 -40.462 20.262 1 70.32 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . B 2 -42.833 -41.305 17.199 1 71.44 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . B 2 -41.635 -42.006 16.573 1 72.43 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . B 2 -40.599 -41.118 15.937 1 73.25 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . B 2 -39.402 -41.25 16.163 1 73.56 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . B 2 -41.068 -40.254 15.072 1 73.43 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . B 2 -45.066 -46.24 18.198 1 70.6 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . B 2 -45.236 -47.683 20.752 1 69.82 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . B 2 -44.322 -45.347 22.144 1 70.45 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . B 2 -44.237 -43.882 19.597 1 70.46 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . B 2 -44.65 -45.805 20.162 1 70.08 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #