data_9EWU # _model_server_result.job_id 5WRg_WjlZ7njt3J7fvV_3A _model_server_result.datetime_utc '2025-02-23 16:04:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ewu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":608}' # _entry.id 9EWU # _exptl.entry_id 9EWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EWU _cell.length_a 154.6 _cell.length_b 154.6 _cell.length_c 128.52 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B FUC 2 B 2 FUC A 602 FUC 3 n C NAG 1 C 1 NAG A 603 NAG 3 n C NAG 2 C 2 NAG A 904 NAG 3 n C FUC 3 C 3 FUC A 903 FUC 3 n D NAG 1 D 1 NAG A 605 NAG 3 n D NAG 2 D 2 NAG A 604 NAG 3 n D FUC 3 D 3 FUC A 606 FUC 3 n E NAG 1 E 1 NAG A 607 NAG 3 n E NAG 2 E 2 NAG A 608 NAG 3 n E FUC 3 E 3 FUC A 609 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale13 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIA sing 445 n n C1 O1A SIA doub 446 n n C1 O1B SIA sing 447 n n C2 C3 SIA sing 448 n n C2 O2 SIA sing 449 n n C2 O6 SIA sing 450 n n C3 C4 SIA sing 451 n n C3 H32 SIA sing 452 n n C3 H31 SIA sing 453 n n C4 C5 SIA sing 454 n n C4 O4 SIA sing 455 n n C4 H4 SIA sing 456 n n C5 C6 SIA sing 457 n n C5 N5 SIA sing 458 n n C5 H5 SIA sing 459 n n C6 C7 SIA sing 460 n n C6 O6 SIA sing 461 n n C6 H6 SIA sing 462 n n C7 C8 SIA sing 463 n n C7 O7 SIA sing 464 n n C7 H7 SIA sing 465 n n C8 C9 SIA sing 466 n n C8 O8 SIA sing 467 n n C8 H8 SIA sing 468 n n C9 O9 SIA sing 469 n n C9 H92 SIA sing 470 n n C9 H91 SIA sing 471 n n C10 C11 SIA sing 472 n n C10 N5 SIA sing 473 n n C10 O10 SIA doub 474 n n C11 H111 SIA sing 475 n n C11 H113 SIA sing 476 n n C11 H112 SIA sing 477 n n N5 HN5 SIA sing 478 n n O1B HO1B SIA sing 479 n n O2 HO2 SIA sing 480 n n O4 HO4 SIA sing 481 n n O7 HO7 SIA sing 482 n n O8 HO8 SIA sing 483 n n O9 HO9 SIA sing 484 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9EWU _atom_sites.fract_transf_matrix[1][1] 0.006468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 601 610 NAG NAG . G 4 NAG A 1 602 611 NAG NAG . H 5 MES A 1 603 619 MES MES . I 6 SO4 A 1 604 620 SO4 SO4 . J 6 SO4 A 1 605 621 SO4 SO4 . K 6 SO4 A 1 606 622 SO4 SO4 . L 7 GOL A 1 607 701 GOL GOL . M 8 SIA A 1 608 901 SIA SIA . N 9 A1H77 A 1 609 905 A1H77 XT3 . O 10 HOH A 1 701 61 HOH HOH . O 10 HOH A 2 702 52 HOH HOH . O 10 HOH A 3 703 63 HOH HOH . O 10 HOH A 4 704 42 HOH HOH . O 10 HOH A 5 705 25 HOH HOH . O 10 HOH A 6 706 15 HOH HOH . O 10 HOH A 7 707 9 HOH HOH . O 10 HOH A 8 708 45 HOH HOH . O 10 HOH A 9 709 12 HOH HOH . O 10 HOH A 10 710 22 HOH HOH . O 10 HOH A 11 711 62 HOH HOH . O 10 HOH A 12 712 85 HOH HOH . O 10 HOH A 13 713 91 HOH HOH . O 10 HOH A 14 714 84 HOH HOH . O 10 HOH A 15 715 32 HOH HOH . O 10 HOH A 16 716 39 HOH HOH . O 10 HOH A 17 717 14 HOH HOH . O 10 HOH A 18 718 92 HOH HOH . O 10 HOH A 19 719 48 HOH HOH . O 10 HOH A 20 720 29 HOH HOH . O 10 HOH A 21 721 36 HOH HOH . O 10 HOH A 22 722 74 HOH HOH . O 10 HOH A 23 723 17 HOH HOH . O 10 HOH A 24 724 46 HOH HOH . O 10 HOH A 25 725 20 HOH HOH . O 10 HOH A 26 726 23 HOH HOH . O 10 HOH A 27 727 89 HOH HOH . O 10 HOH A 28 728 80 HOH HOH . O 10 HOH A 29 729 35 HOH HOH . O 10 HOH A 30 730 54 HOH HOH . O 10 HOH A 31 731 4 HOH HOH . O 10 HOH A 32 732 31 HOH HOH . O 10 HOH A 33 733 38 HOH HOH . O 10 HOH A 34 734 57 HOH HOH . O 10 HOH A 35 735 77 HOH HOH . O 10 HOH A 36 736 49 HOH HOH . O 10 HOH A 37 737 30 HOH HOH . O 10 HOH A 38 738 60 HOH HOH . O 10 HOH A 39 739 34 HOH HOH . O 10 HOH A 40 740 72 HOH HOH . O 10 HOH A 41 741 64 HOH HOH . O 10 HOH A 42 742 18 HOH HOH . O 10 HOH A 43 743 43 HOH HOH . O 10 HOH A 44 744 3 HOH HOH . O 10 HOH A 45 745 21 HOH HOH . O 10 HOH A 46 746 27 HOH HOH . O 10 HOH A 47 747 2 HOH HOH . O 10 HOH A 48 748 1 HOH HOH . O 10 HOH A 49 749 16 HOH HOH . O 10 HOH A 50 750 28 HOH HOH . O 10 HOH A 51 751 65 HOH HOH . O 10 HOH A 52 752 11 HOH HOH . O 10 HOH A 53 753 5 HOH HOH . O 10 HOH A 54 754 50 HOH HOH . O 10 HOH A 55 755 67 HOH HOH . O 10 HOH A 56 756 6 HOH HOH . O 10 HOH A 57 757 33 HOH HOH . O 10 HOH A 58 758 90 HOH HOH . O 10 HOH A 59 759 19 HOH HOH . O 10 HOH A 60 760 81 HOH HOH . O 10 HOH A 61 761 76 HOH HOH . O 10 HOH A 62 762 73 HOH HOH . O 10 HOH A 63 763 58 HOH HOH . O 10 HOH A 64 764 47 HOH HOH . O 10 HOH A 65 765 51 HOH HOH . O 10 HOH A 66 766 53 HOH HOH . O 10 HOH A 67 767 26 HOH HOH . O 10 HOH A 68 768 44 HOH HOH . O 10 HOH A 69 769 24 HOH HOH . O 10 HOH A 70 770 94 HOH HOH . O 10 HOH A 71 771 7 HOH HOH . O 10 HOH A 72 772 78 HOH HOH . O 10 HOH A 73 773 79 HOH HOH . O 10 HOH A 74 774 8 HOH HOH . O 10 HOH A 75 775 88 HOH HOH . O 10 HOH A 76 776 93 HOH HOH . O 10 HOH A 77 777 13 HOH HOH . O 10 HOH A 78 778 66 HOH HOH . O 10 HOH A 79 779 59 HOH HOH . O 10 HOH A 80 780 75 HOH HOH . O 10 HOH A 81 781 40 HOH HOH . O 10 HOH A 82 782 82 HOH HOH . O 10 HOH A 83 783 83 HOH HOH . O 10 HOH A 84 784 87 HOH HOH . O 10 HOH A 85 785 97 HOH HOH . O 10 HOH A 86 786 10 HOH HOH . O 10 HOH A 87 787 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . . . M 8 39.211 45.376 50.972 1 106.05 ? C1 SIA 608 A 1 HETATM 2 C C2 SIA . . . M 8 38.696 46.835 50.652 1 101.44 ? C2 SIA 608 A 1 HETATM 3 C C3 SIA . . . M 8 39.646 47.743 49.831 1 98.09 ? C3 SIA 608 A 1 HETATM 4 C C4 SIA . . . M 8 39.007 48.977 49.157 1 97.73 ? C4 SIA 608 A 1 HETATM 5 C C5 SIA . . . M 8 37.503 49.036 49.476 1 94.8 ? C5 SIA 608 A 1 HETATM 6 C C6 SIA . . . M 8 36.907 47.666 49.048 1 94.86 ? C6 SIA 608 A 1 HETATM 7 C C7 SIA . . . M 8 35.357 47.555 49.136 1 88.45 ? C7 SIA 608 A 1 HETATM 8 C C8 SIA . . . M 8 34.896 46.112 49.497 1 82.99 ? C8 SIA 608 A 1 HETATM 9 C C9 SIA . . . M 8 33.384 45.922 49.338 1 72.93 ? C9 SIA 608 A 1 HETATM 10 C C10 SIA . . . M 8 36.442 50.62 47.705 1 87.57 ? C10 SIA 608 A 1 HETATM 11 C C11 SIA . . . M 8 35.661 51.937 47.635 1 70.06 ? C11 SIA 608 A 1 HETATM 12 N N5 SIA . . . M 8 36.774 50.224 48.969 1 92.76 ? N5 SIA 608 A 1 HETATM 13 O O1A SIA . . . M 8 39.607 44.811 49.911 1 105.88 ? O1A SIA 608 A 1 HETATM 14 O O1B SIA . . . M 8 39.146 44.969 52.17 1 104.78 ? O1B SIA 608 A 1 HETATM 15 O O2 SIA . . . M 8 38.419 47.381 51.894 1 97.52 ? O2 SIA 608 A 1 HETATM 16 O O4 SIA . . . M 8 39.597 50.229 49.559 1 100.03 ? O4 SIA 608 A 1 HETATM 17 O O6 SIA . . . M 8 37.421 46.646 49.912 1 101.72 ? O6 SIA 608 A 1 HETATM 18 O O7 SIA . . . M 8 34.831 48.548 50.006 1 83.8 ? O7 SIA 608 A 1 HETATM 19 O O8 SIA . . . M 8 35.647 45.153 48.743 1 83.97 ? O8 SIA 608 A 1 HETATM 20 O O9 SIA . . . M 8 32.836 46.748 48.302 1 74.14 ? O9 SIA 608 A 1 HETATM 21 O O10 SIA . . . M 8 36.725 49.998 46.677 1 94.85 ? O10 SIA 608 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #