data_9EYX # _model_server_result.job_id V8DyX8hXt49lHnyDRWGzbA _model_server_result.datetime_utc '2025-03-13 21:24:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9eyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 9EYX # _exptl.entry_id 9EYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.465 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3~{S})-2-[(5-azanyl-6-fluoranyl-1~{H}-pyrrolo[3,2-b]pyridin-2-yl)methyl]-6-fluoranyl-1'-[(4-fluorophenyl)methyl]spiro[isoindole-3,3'-pyrrolidine]-1,2'-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EYX _cell.length_a 102.124 _cell.length_b 139.123 _cell.length_c 178.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 102.124 139.123 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 102.124 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 139.123 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H20 F3 N5 O2' _chem_comp.formula_weight 491.465 _chem_comp.id A1H73 _chem_comp.mon_nstd_flag . _chem_comp.name "(3~{S})-2-[(5-azanyl-6-fluoranyl-1~{H}-pyrrolo[3,2-b]pyridin-2-yl)methyl]-6-fluoranyl-1'-[(4-fluorophenyl)methyl]spiro[isoindole-3,3'-pyrrolidine]-1,2'-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C14 A1H73 sing 1 n n C13 C14 A1H73 doub 2 n y C13 C12 A1H73 sing 3 n y C14 C15 A1H73 sing 4 n y C15 C16 A1H73 doub 5 n y C12 C11 A1H73 doub 6 n y N4 C25 A1H73 sing 7 n n C16 C11 A1H73 sing 8 n y C16 C17 A1H73 sing 9 n n C11 C9 A1H73 sing 10 n n C8 C7 A1H73 sing 11 n n C8 C9 A1H73 sing 12 n n F C24 A1H73 sing 13 n n C25 C24 A1H73 doub 14 n y C25 N3 A1H73 sing 15 n y C24 C23 A1H73 sing 16 n y N3 C21 A1H73 doub 17 n y C7 N A1H73 sing 18 n n C1 C A1H73 doub 19 n y C1 C2 A1H73 sing 20 n y C17 O1 A1H73 doub 21 n n C17 N1 A1H73 sing 22 n n C9 N1 A1H73 sing 23 n n C9 C10 A1H73 sing 24 n n C23 C22 A1H73 doub 25 n y C21 C22 A1H73 sing 26 n y C21 C20 A1H73 sing 27 n y F2 C2 A1H73 sing 28 n n C22 N2 A1H73 sing 29 n y C C5 A1H73 sing 30 n y N1 C18 A1H73 sing 31 n n C20 C19 A1H73 doub 32 n y C2 C3 A1H73 doub 33 n y N2 C19 A1H73 sing 34 n y C19 C18 A1H73 sing 35 n n N C10 A1H73 sing 36 n n N C6 A1H73 sing 37 n n C10 O A1H73 doub 38 n n C5 C6 A1H73 sing 39 n n C5 C4 A1H73 doub 40 n y C3 C4 A1H73 sing 41 n y C1 H1 A1H73 sing 42 n n C3 H2 A1H73 sing 43 n n C7 H3 A1H73 sing 44 n n C7 H4 A1H73 sing 45 n n C8 H5 A1H73 sing 46 n n C8 H6 A1H73 sing 47 n n C12 H7 A1H73 sing 48 n n C13 H8 A1H73 sing 49 n n C15 H9 A1H73 sing 50 n n C20 H10 A1H73 sing 51 n n C4 H11 A1H73 sing 52 n n C H12 A1H73 sing 53 n n C6 H13 A1H73 sing 54 n n C6 H14 A1H73 sing 55 n n C18 H15 A1H73 sing 56 n n C18 H16 A1H73 sing 57 n n N2 H17 A1H73 sing 58 n n C23 H18 A1H73 sing 59 n n N4 H19 A1H73 sing 60 n n N4 H20 A1H73 sing 61 n n # _atom_sites.entry_id 9EYX _atom_sites.fract_transf_matrix[1][1] 0.009792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1H73 A 1 701 701 A1H73 INH . D 4 MTA A 1 702 701 MTA MTA . E 5 SO4 A 1 703 2 SO4 SO4 . F 6 HOH A 1 801 76 HOH HOH . F 6 HOH A 2 802 113 HOH HOH . F 6 HOH A 3 803 13 HOH HOH . F 6 HOH A 4 804 63 HOH HOH . F 6 HOH A 5 805 123 HOH HOH . F 6 HOH A 6 806 9 HOH HOH . F 6 HOH A 7 807 15 HOH HOH . F 6 HOH A 8 808 119 HOH HOH . F 6 HOH A 9 809 4 HOH HOH . F 6 HOH A 10 810 106 HOH HOH . F 6 HOH A 11 811 117 HOH HOH . F 6 HOH A 12 812 37 HOH HOH . F 6 HOH A 13 813 31 HOH HOH . F 6 HOH A 14 814 28 HOH HOH . F 6 HOH A 15 815 20 HOH HOH . F 6 HOH A 16 816 34 HOH HOH . F 6 HOH A 17 817 168 HOH HOH . F 6 HOH A 18 818 50 HOH HOH . F 6 HOH A 19 819 148 HOH HOH . F 6 HOH A 20 820 96 HOH HOH . F 6 HOH A 21 821 120 HOH HOH . F 6 HOH A 22 822 10 HOH HOH . F 6 HOH A 23 823 1 HOH HOH . F 6 HOH A 24 824 124 HOH HOH . F 6 HOH A 25 825 71 HOH HOH . F 6 HOH A 26 826 16 HOH HOH . F 6 HOH A 27 827 87 HOH HOH . F 6 HOH A 28 828 23 HOH HOH . F 6 HOH A 29 829 19 HOH HOH . F 6 HOH A 30 830 89 HOH HOH . F 6 HOH A 31 831 80 HOH HOH . F 6 HOH A 32 832 125 HOH HOH . F 6 HOH A 33 833 46 HOH HOH . F 6 HOH A 34 834 166 HOH HOH . F 6 HOH A 35 835 6 HOH HOH . F 6 HOH A 36 836 5 HOH HOH . F 6 HOH A 37 837 43 HOH HOH . F 6 HOH A 38 838 144 HOH HOH . F 6 HOH A 39 839 95 HOH HOH . F 6 HOH A 40 840 53 HOH HOH . F 6 HOH A 41 841 2 HOH HOH . F 6 HOH A 42 842 164 HOH HOH . F 6 HOH A 43 843 79 HOH HOH . F 6 HOH A 44 844 11 HOH HOH . F 6 HOH A 45 845 85 HOH HOH . F 6 HOH A 46 846 158 HOH HOH . F 6 HOH A 47 847 94 HOH HOH . F 6 HOH A 48 848 137 HOH HOH . F 6 HOH A 49 849 134 HOH HOH . F 6 HOH A 50 850 8 HOH HOH . F 6 HOH A 51 851 86 HOH HOH . F 6 HOH A 52 852 32 HOH HOH . F 6 HOH A 53 853 92 HOH HOH . F 6 HOH A 54 854 88 HOH HOH . G 6 HOH B 1 401 105 HOH HOH . G 6 HOH B 2 402 3 HOH HOH . G 6 HOH B 3 403 81 HOH HOH . G 6 HOH B 4 404 47 HOH HOH . G 6 HOH B 5 405 84 HOH HOH . G 6 HOH B 6 406 108 HOH HOH . G 6 HOH B 7 407 99 HOH HOH . G 6 HOH B 8 408 40 HOH HOH . G 6 HOH B 9 409 127 HOH HOH . G 6 HOH B 10 410 111 HOH HOH . G 6 HOH B 11 411 21 HOH HOH . G 6 HOH B 12 412 72 HOH HOH . G 6 HOH B 13 413 154 HOH HOH . G 6 HOH B 14 414 109 HOH HOH . G 6 HOH B 15 415 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1H73 . . . C 3 24.601 85.716 9.965 1 53.08 ? C1 A1H73 701 A 1 HETATM 2 C C2 A1H73 . . . C 3 23.428 85.558 10.654 1 54.74 ? C2 A1H73 701 A 1 HETATM 3 C C3 A1H73 . . . C 3 23.115 86.293 11.765 1 55.21 ? C3 A1H73 701 A 1 HETATM 4 C C7 A1H73 . . . C 3 26.92 89.572 9.839 1 48.29 ? C7 A1H73 701 A 1 HETATM 5 C C8 A1H73 . . . C 3 28.272 90.091 9.37 1 46.68 ? C8 A1H73 701 A 1 HETATM 6 C C9 A1H73 . . . C 3 29.315 89.16 10.032 1 44.89 ? C9 A1H73 701 A 1 HETATM 7 C C10 A1H73 . . . C 3 28.538 88.516 11.202 1 46.15 ? C10 A1H73 701 A 1 HETATM 8 C C11 A1H73 . . . C 3 29.881 88.108 9.106 1 43.34 ? C11 A1H73 701 A 1 HETATM 9 C C12 A1H73 . . . C 3 29.239 87.161 8.321 1 43.54 ? C12 A1H73 701 A 1 HETATM 10 C C13 A1H73 . . . C 3 29.981 86.298 7.531 1 42.58 ? C13 A1H73 701 A 1 HETATM 11 C C14 A1H73 . . . C 3 31.353 86.413 7.545 1 41.36 ? C14 A1H73 701 A 1 HETATM 12 C C15 A1H73 . . . C 3 32.029 87.341 8.306 1 41.09 ? C15 A1H73 701 A 1 HETATM 13 C C16 A1H73 . . . C 3 31.262 88.2 9.091 1 41.94 ? C16 A1H73 701 A 1 HETATM 14 C C19 A1H73 . . . C 3 30.596 92.28 10.956 1 44.68 ? C19 A1H73 701 A 1 HETATM 15 C C20 A1H73 . . . C 3 31.663 93.041 10.54 1 44.09 ? C20 A1H73 701 A 1 HETATM 16 C C21 A1H73 . . . C 3 31.157 94.331 10.177 1 45.15 ? C21 A1H73 701 A 1 HETATM 17 C C22 A1H73 . . . C 3 29.786 94.332 10.409 1 46.5 ? C22 A1H73 701 A 1 HETATM 18 C C24 A1H73 . . . C 3 29.704 96.546 9.656 1 47.49 ? C24 A1H73 701 A 1 HETATM 19 F F2 A1H73 . . . C 3 22.535 84.631 10.215 1 56.34 ? F2 A1H73 701 A 1 HETATM 20 C C4 A1H73 . . . C 3 24.028 87.235 12.206 1 54.06 ? C4 A1H73 701 A 1 HETATM 21 C C5 A1H73 . . . C 3 25.231 87.435 11.542 1 51.81 ? C5 A1H73 701 A 1 HETATM 22 C C A1H73 . . . C 3 25.505 86.662 10.419 1 51.76 ? C A1H73 701 A 1 HETATM 23 C C6 A1H73 . . . C 3 26.212 88.47 12.04 1 50.1 ? C6 A1H73 701 A 1 HETATM 24 N N A1H73 . . . C 3 27.239 88.829 11.061 1 48.22 ? N A1H73 701 A 1 HETATM 25 O O A1H73 . . . C 3 29.021 87.861 12.104 1 45.65 ? O A1H73 701 A 1 HETATM 26 N N1 A1H73 . . . C 3 30.539 89.835 10.502 1 43.64 ? N1 A1H73 701 A 1 HETATM 27 C C17 A1H73 . . . C 3 31.682 89.29 10.002 1 42.05 ? C17 A1H73 701 A 1 HETATM 28 O O1 A1H73 . . . C 3 32.81 89.67 10.257 1 41.09 ? O1 A1H73 701 A 1 HETATM 29 F F1 A1H73 . . . C 3 32.082 85.567 6.769 1 40.68 ? F1 A1H73 701 A 1 HETATM 30 C C18 A1H73 . . . C 3 30.537 90.896 11.498 1 44.06 ? C18 A1H73 701 A 1 HETATM 31 N N2 A1H73 . . . C 3 29.481 93.073 10.899 1 46.26 ? N2 A1H73 701 A 1 HETATM 32 C C23 A1H73 . . . C 3 29.018 95.456 10.149 1 47.63 ? C23 A1H73 701 A 1 HETATM 33 F F A1H73 . . . C 3 29.012 97.671 9.382 1 48.61 ? F A1H73 701 A 1 HETATM 34 C C25 A1H73 . . . C 3 31.081 96.517 9.433 1 46.42 ? C25 A1H73 701 A 1 HETATM 35 N N4 A1H73 . . . C 3 31.739 97.576 8.952 1 46.9 ? N4 A1H73 701 A 1 HETATM 36 N N3 A1H73 . . . C 3 31.807 95.407 9.693 1 44.92 ? N3 A1H73 701 A 1 # _model_server_stats.io_time_ms 106 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #