data_9EYX # _model_server_result.job_id UujAthn3a4uvqeSCmNfAUQ _model_server_result.datetime_utc '2025-03-13 21:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9eyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 9EYX # _exptl.entry_id 9EYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EYX _cell.length_a 102.124 _cell.length_b 139.123 _cell.length_c 178.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 102.124 139.123 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 102.124 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 139.123 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 298 n n CS HCS1 MTA sing 299 n n CS HCS2 MTA sing 300 n n CS HCS3 MTA sing 301 n n S5' C5' MTA sing 302 n n C5' C4' MTA sing 303 n n C5' "H5'1" MTA sing 304 n n C5' "H5'2" MTA sing 305 n n C4' O4' MTA sing 306 n n C4' C3' MTA sing 307 n n C4' H4' MTA sing 308 n n O4' C1' MTA sing 309 n n C2' O2' MTA sing 310 n n C2' C3' MTA sing 311 n n C2' C1' MTA sing 312 n n C2' H2' MTA sing 313 n n O2' HO2' MTA sing 314 n n C3' O3' MTA sing 315 n n C3' H3' MTA sing 316 n n O3' H3T MTA sing 317 n n C1' N9 MTA sing 318 n n C1' H1' MTA sing 319 n n N9 C8 MTA sing 320 n y N9 C4 MTA sing 321 n y C8 N7 MTA doub 322 n y C8 H8 MTA sing 323 n n N7 C5 MTA sing 324 n y C5 C6 MTA sing 325 n y C5 C4 MTA doub 326 n y C6 N6 MTA sing 327 n n C6 N1 MTA doub 328 n y N6 H61 MTA sing 329 n n N6 H62 MTA sing 330 n n N1 C2 MTA sing 331 n y C2 N3 MTA doub 332 n y C2 H2 MTA sing 333 n n N3 C4 MTA sing 334 n y # _atom_sites.entry_id 9EYX _atom_sites.fract_transf_matrix[1][1] 0.009792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1H73 A 1 701 701 A1H73 INH . D 4 MTA A 1 702 701 MTA MTA . E 5 SO4 A 1 703 2 SO4 SO4 . F 6 HOH A 1 801 76 HOH HOH . F 6 HOH A 2 802 113 HOH HOH . F 6 HOH A 3 803 13 HOH HOH . F 6 HOH A 4 804 63 HOH HOH . F 6 HOH A 5 805 123 HOH HOH . F 6 HOH A 6 806 9 HOH HOH . F 6 HOH A 7 807 15 HOH HOH . F 6 HOH A 8 808 119 HOH HOH . F 6 HOH A 9 809 4 HOH HOH . F 6 HOH A 10 810 106 HOH HOH . F 6 HOH A 11 811 117 HOH HOH . F 6 HOH A 12 812 37 HOH HOH . F 6 HOH A 13 813 31 HOH HOH . F 6 HOH A 14 814 28 HOH HOH . F 6 HOH A 15 815 20 HOH HOH . F 6 HOH A 16 816 34 HOH HOH . F 6 HOH A 17 817 168 HOH HOH . F 6 HOH A 18 818 50 HOH HOH . F 6 HOH A 19 819 148 HOH HOH . F 6 HOH A 20 820 96 HOH HOH . F 6 HOH A 21 821 120 HOH HOH . F 6 HOH A 22 822 10 HOH HOH . F 6 HOH A 23 823 1 HOH HOH . F 6 HOH A 24 824 124 HOH HOH . F 6 HOH A 25 825 71 HOH HOH . F 6 HOH A 26 826 16 HOH HOH . F 6 HOH A 27 827 87 HOH HOH . F 6 HOH A 28 828 23 HOH HOH . F 6 HOH A 29 829 19 HOH HOH . F 6 HOH A 30 830 89 HOH HOH . F 6 HOH A 31 831 80 HOH HOH . F 6 HOH A 32 832 125 HOH HOH . F 6 HOH A 33 833 46 HOH HOH . F 6 HOH A 34 834 166 HOH HOH . F 6 HOH A 35 835 6 HOH HOH . F 6 HOH A 36 836 5 HOH HOH . F 6 HOH A 37 837 43 HOH HOH . F 6 HOH A 38 838 144 HOH HOH . F 6 HOH A 39 839 95 HOH HOH . F 6 HOH A 40 840 53 HOH HOH . F 6 HOH A 41 841 2 HOH HOH . F 6 HOH A 42 842 164 HOH HOH . F 6 HOH A 43 843 79 HOH HOH . F 6 HOH A 44 844 11 HOH HOH . F 6 HOH A 45 845 85 HOH HOH . F 6 HOH A 46 846 158 HOH HOH . F 6 HOH A 47 847 94 HOH HOH . F 6 HOH A 48 848 137 HOH HOH . F 6 HOH A 49 849 134 HOH HOH . F 6 HOH A 50 850 8 HOH HOH . F 6 HOH A 51 851 86 HOH HOH . F 6 HOH A 52 852 32 HOH HOH . F 6 HOH A 53 853 92 HOH HOH . F 6 HOH A 54 854 88 HOH HOH . G 6 HOH B 1 401 105 HOH HOH . G 6 HOH B 2 402 3 HOH HOH . G 6 HOH B 3 403 81 HOH HOH . G 6 HOH B 4 404 47 HOH HOH . G 6 HOH B 5 405 84 HOH HOH . G 6 HOH B 6 406 108 HOH HOH . G 6 HOH B 7 407 99 HOH HOH . G 6 HOH B 8 408 40 HOH HOH . G 6 HOH B 9 409 127 HOH HOH . G 6 HOH B 10 410 111 HOH HOH . G 6 HOH B 11 411 21 HOH HOH . G 6 HOH B 12 412 72 HOH HOH . G 6 HOH B 13 413 154 HOH HOH . G 6 HOH B 14 414 109 HOH HOH . G 6 HOH B 15 415 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . D 4 29.131 100.032 5.936 1 31.84 ? CS MTA 702 A 1 HETATM 2 S S5' MTA . . . D 4 30.458 98.857 6.192 1 31.65 ? S5' MTA 702 A 1 HETATM 3 C C5' MTA . . . D 4 31.901 99.951 6.116 1 30.51 ? C5' MTA 702 A 1 HETATM 4 C C4' MTA . . . D 4 32.07 100.668 4.797 1 30.12 ? C4' MTA 702 A 1 HETATM 5 O O4' MTA . . . D 4 33.27 101.471 4.84 1 29.56 ? O4' MTA 702 A 1 HETATM 6 C C2' MTA . . . D 4 33.642 100.005 3.08 1 29.57 ? C2' MTA 702 A 1 HETATM 7 O O2' MTA . . . D 4 33.756 99.918 1.675 1 30.48 ? O2' MTA 702 A 1 HETATM 8 C C3' MTA . . . D 4 32.21 99.756 3.573 1 29.68 ? C3' MTA 702 A 1 HETATM 9 O O3' MTA . . . D 4 31.243 100.115 2.593 1 29.55 ? O3' MTA 702 A 1 HETATM 10 C C1' MTA . . . D 4 33.892 101.421 3.58 1 28.65 ? C1' MTA 702 A 1 HETATM 11 N N9 MTA . . . D 4 35.296 101.764 3.76 1 27.48 ? N9 MTA 702 A 1 HETATM 12 C C8 MTA . . . D 4 36.24 101.028 4.43 1 27.23 ? C8 MTA 702 A 1 HETATM 13 N N7 MTA . . . D 4 37.422 101.589 4.45 1 26.81 ? N7 MTA 702 A 1 HETATM 14 C C5 MTA . . . D 4 37.249 102.777 3.758 1 26.63 ? C5 MTA 702 A 1 HETATM 15 C C6 MTA . . . D 4 38.138 103.82 3.433 1 26.46 ? C6 MTA 702 A 1 HETATM 16 N N6 MTA . . . D 4 39.421 103.831 3.782 1 26.37 ? N6 MTA 702 A 1 HETATM 17 N N1 MTA . . . D 4 37.643 104.867 2.73 1 26.56 ? N1 MTA 702 A 1 HETATM 18 C C2 MTA . . . D 4 36.349 104.848 2.383 1 26.99 ? C2 MTA 702 A 1 HETATM 19 N N3 MTA . . . D 4 35.423 103.923 2.629 1 27.14 ? N3 MTA 702 A 1 HETATM 20 C C4 MTA . . . D 4 35.94 102.9 3.331 1 27.03 ? C4 MTA 702 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #