data_9EZ2 # _model_server_result.job_id kEw_HHeYHu2SaDvG6lgLnQ _model_server_result.datetime_utc '2025-01-10 10:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ez2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9EZ2 # _exptl.entry_id 9EZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.636 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4b,25-trihydroxyvitamin D3' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9EZ2 _cell.length_a 66.14 _cell.length_b 66.14 _cell.length_c 263.74 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -33.07 57.27892 -43.956667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H44 O4' _chem_comp.formula_weight 432.636 _chem_comp.id A1H72 _chem_comp.mon_nstd_flag n _chem_comp.name '1,4b,25-trihydroxyvitamin D3' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,2S,4S,6E)-6-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-5-methylidene-cyclohexane-1,2,4-triol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C25 A1H72 sing 1 n n C26 C25 A1H72 sing 2 n n C25 O3 A1H72 sing 3 n n C25 C24 A1H72 sing 4 n n C24 C23 A1H72 sing 5 n n C23 C22 A1H72 sing 6 n n C22 C20 A1H72 sing 7 n n C18 C13 A1H72 sing 8 n n C19 C10 A1H72 doub 9 n n C11 C12 A1H72 sing 10 n n C11 C9 A1H72 sing 11 n n C12 C13 A1H72 sing 12 n n C20 C21 A1H72 sing 13 n n C20 C17 A1H72 sing 14 n n C10 C5 A1H72 sing 15 n n C10 C1 A1H72 sing 16 n n C4 C5 A1H72 sing 17 n n C4 O4 A1H72 sing 18 n n C4 C3 A1H72 sing 19 n n C2 C1 A1H72 sing 20 n n C2 C3 A1H72 sing 21 n n O1 C1 A1H72 sing 22 n n C13 C17 A1H72 sing 23 n n C13 C14 A1H72 sing 24 n n C5 C28 A1H72 doub 25 e n C3 O2 A1H72 sing 26 n n C17 C16 A1H72 sing 27 n n C28 C7 A1H72 sing 28 n n C9 C6 A1H72 sing 29 n n C7 C6 A1H72 doub 30 e n C6 C14 A1H72 sing 31 n n C14 C15 A1H72 sing 32 n n C16 C15 A1H72 sing 33 n n C14 H141 A1H72 sing 34 n n C9 H91 A1H72 sing 35 n n C9 H92 A1H72 sing 36 n n C11 H111 A1H72 sing 37 n n C11 H112 A1H72 sing 38 n n C12 H121 A1H72 sing 39 n n C12 H122 A1H72 sing 40 n n C18 H181 A1H72 sing 41 n n C18 H182 A1H72 sing 42 n n C18 H183 A1H72 sing 43 n n C19 H191 A1H72 sing 44 n n C19 H192 A1H72 sing 45 n n C21 H211 A1H72 sing 46 n n C21 H212 A1H72 sing 47 n n C21 H213 A1H72 sing 48 n n C23 H231 A1H72 sing 49 n n C23 H232 A1H72 sing 50 n n C17 H171 A1H72 sing 51 n n C7 H71 A1H72 sing 52 n n C28 H61 A1H72 sing 53 n n C4 H41 A1H72 sing 54 n n C3 H31 A1H72 sing 55 n n C2 H21 A1H72 sing 56 n n C2 H22 A1H72 sing 57 n n C1 H11 A1H72 sing 58 n n C16 H161 A1H72 sing 59 n n C16 H162 A1H72 sing 60 n n C20 H201 A1H72 sing 61 n n C22 H221 A1H72 sing 62 n n C22 H222 A1H72 sing 63 n n C24 H241 A1H72 sing 64 n n C24 H242 A1H72 sing 65 n n C26 H261 A1H72 sing 66 n n C26 H262 A1H72 sing 67 n n C26 H263 A1H72 sing 68 n n C15 H151 A1H72 sing 69 n n C15 H152 A1H72 sing 70 n n C27 H271 A1H72 sing 71 n n C27 H272 A1H72 sing 72 n n C27 H273 A1H72 sing 73 n n O4 H39 A1H72 sing 74 n n O2 HO2 A1H72 sing 75 n n O1 HO1 A1H72 sing 76 n n O3 HO3 A1H72 sing 77 n n # _atom_sites.entry_id 9EZ2 _atom_sites.fract_transf_matrix[1][1] 0.015119 _atom_sites.fract_transf_matrix[1][2] 0.008729 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1H72 A 1 501 1 A1H72 LIG . D 4 ACT A 1 502 502 ACT ACT . E 5 HOH A 1 601 66 HOH HOH . E 5 HOH A 2 602 99 HOH HOH . E 5 HOH A 3 603 11 HOH HOH . E 5 HOH A 4 604 126 HOH HOH . E 5 HOH A 5 605 79 HOH HOH . E 5 HOH A 6 606 113 HOH HOH . E 5 HOH A 7 607 97 HOH HOH . E 5 HOH A 8 608 37 HOH HOH . E 5 HOH A 9 609 30 HOH HOH . E 5 HOH A 10 610 77 HOH HOH . E 5 HOH A 11 611 48 HOH HOH . E 5 HOH A 12 612 108 HOH HOH . E 5 HOH A 13 613 45 HOH HOH . E 5 HOH A 14 614 122 HOH HOH . E 5 HOH A 15 615 98 HOH HOH . E 5 HOH A 16 616 111 HOH HOH . E 5 HOH A 17 617 3 HOH HOH . E 5 HOH A 18 618 96 HOH HOH . E 5 HOH A 19 619 18 HOH HOH . E 5 HOH A 20 620 121 HOH HOH . E 5 HOH A 21 621 44 HOH HOH . E 5 HOH A 22 622 112 HOH HOH . E 5 HOH A 23 623 71 HOH HOH . E 5 HOH A 24 624 21 HOH HOH . E 5 HOH A 25 625 87 HOH HOH . E 5 HOH A 26 626 78 HOH HOH . E 5 HOH A 27 627 14 HOH HOH . E 5 HOH A 28 628 105 HOH HOH . E 5 HOH A 29 629 63 HOH HOH . E 5 HOH A 30 630 62 HOH HOH . E 5 HOH A 31 631 16 HOH HOH . E 5 HOH A 32 632 88 HOH HOH . E 5 HOH A 33 633 9 HOH HOH . E 5 HOH A 34 634 15 HOH HOH . E 5 HOH A 35 635 58 HOH HOH . E 5 HOH A 36 636 40 HOH HOH . E 5 HOH A 37 637 83 HOH HOH . E 5 HOH A 38 638 94 HOH HOH . E 5 HOH A 39 639 53 HOH HOH . E 5 HOH A 40 640 91 HOH HOH . E 5 HOH A 41 641 125 HOH HOH . E 5 HOH A 42 642 119 HOH HOH . E 5 HOH A 43 643 25 HOH HOH . E 5 HOH A 44 644 33 HOH HOH . E 5 HOH A 45 645 2 HOH HOH . E 5 HOH A 46 646 22 HOH HOH . E 5 HOH A 47 647 75 HOH HOH . E 5 HOH A 48 648 120 HOH HOH . E 5 HOH A 49 649 80 HOH HOH . E 5 HOH A 50 650 56 HOH HOH . E 5 HOH A 51 651 19 HOH HOH . E 5 HOH A 52 652 49 HOH HOH . E 5 HOH A 53 653 24 HOH HOH . E 5 HOH A 54 654 46 HOH HOH . E 5 HOH A 55 655 50 HOH HOH . E 5 HOH A 56 656 1 HOH HOH . E 5 HOH A 57 657 10 HOH HOH . E 5 HOH A 58 658 5 HOH HOH . E 5 HOH A 59 659 8 HOH HOH . E 5 HOH A 60 660 42 HOH HOH . E 5 HOH A 61 661 76 HOH HOH . E 5 HOH A 62 662 6 HOH HOH . E 5 HOH A 63 663 67 HOH HOH . E 5 HOH A 64 664 28 HOH HOH . E 5 HOH A 65 665 93 HOH HOH . E 5 HOH A 66 666 13 HOH HOH . E 5 HOH A 67 667 4 HOH HOH . E 5 HOH A 68 668 89 HOH HOH . E 5 HOH A 69 669 55 HOH HOH . E 5 HOH A 70 670 86 HOH HOH . E 5 HOH A 71 671 26 HOH HOH . E 5 HOH A 72 672 35 HOH HOH . E 5 HOH A 73 673 34 HOH HOH . E 5 HOH A 74 674 60 HOH HOH . E 5 HOH A 75 675 12 HOH HOH . E 5 HOH A 76 676 43 HOH HOH . E 5 HOH A 77 677 23 HOH HOH . E 5 HOH A 78 678 69 HOH HOH . E 5 HOH A 79 679 20 HOH HOH . E 5 HOH A 80 680 52 HOH HOH . E 5 HOH A 81 681 7 HOH HOH . E 5 HOH A 82 682 38 HOH HOH . E 5 HOH A 83 683 70 HOH HOH . E 5 HOH A 84 684 36 HOH HOH . E 5 HOH A 85 685 114 HOH HOH . E 5 HOH A 86 686 57 HOH HOH . E 5 HOH A 87 687 109 HOH HOH . E 5 HOH A 88 688 27 HOH HOH . E 5 HOH A 89 689 47 HOH HOH . E 5 HOH A 90 690 39 HOH HOH . E 5 HOH A 91 691 31 HOH HOH . E 5 HOH A 92 692 84 HOH HOH . E 5 HOH A 93 693 61 HOH HOH . E 5 HOH A 94 694 85 HOH HOH . E 5 HOH A 95 695 102 HOH HOH . E 5 HOH A 96 696 59 HOH HOH . E 5 HOH A 97 697 65 HOH HOH . E 5 HOH A 98 698 68 HOH HOH . E 5 HOH A 99 699 104 HOH HOH . E 5 HOH A 100 700 29 HOH HOH . E 5 HOH A 101 701 103 HOH HOH . E 5 HOH A 102 702 100 HOH HOH . E 5 HOH A 103 703 64 HOH HOH . E 5 HOH A 104 704 51 HOH HOH . E 5 HOH A 105 705 118 HOH HOH . E 5 HOH A 106 706 95 HOH HOH . E 5 HOH A 107 707 124 HOH HOH . E 5 HOH A 108 708 110 HOH HOH . E 5 HOH A 109 709 123 HOH HOH . E 5 HOH A 110 710 92 HOH HOH . E 5 HOH A 111 711 101 HOH HOH . E 5 HOH A 112 712 54 HOH HOH . E 5 HOH A 113 713 117 HOH HOH . E 5 HOH A 114 714 90 HOH HOH . E 5 HOH A 115 715 115 HOH HOH . E 5 HOH A 116 716 72 HOH HOH . E 5 HOH A 117 717 73 HOH HOH . E 5 HOH A 118 718 116 HOH HOH . E 5 HOH A 119 719 81 HOH HOH . E 5 HOH A 120 720 82 HOH HOH . F 5 HOH B 1 701 106 HOH HOH . F 5 HOH B 2 702 17 HOH HOH . F 5 HOH B 3 703 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 A1H72 . . . C 3 -30.5 17.446 -4.589 1 37.47 ? C14 A1H72 501 A 1 HETATM 2 C C6 A1H72 . . . C 3 -31.986 17.494 -4.873 1 32.77 ? C6 A1H72 501 A 1 HETATM 3 C C9 A1H72 . . . C 3 -32.503 16.122 -5.211 1 43.99 ? C9 A1H72 501 A 1 HETATM 4 C C11 A1H72 . . . C 3 -31.726 15.525 -6.396 1 43.05 ? C11 A1H72 501 A 1 HETATM 5 C C12 A1H72 . . . C 3 -30.218 15.546 -6.15 1 37.72 ? C12 A1H72 501 A 1 HETATM 6 C C18 A1H72 . . . C 3 -29.92 17.909 -6.995 1 39.33 ? C18 A1H72 501 A 1 HETATM 7 C C5 A1H72 . . . C 3 -34.737 19.845 -5.597 1 35.02 ? C5 A1H72 501 A 1 HETATM 8 C C10 A1H72 . . . C 3 -34.067 21.127 -5.929 1 44.53 ? C10 A1H72 501 A 1 HETATM 9 C C19 A1H72 . . . C 3 -32.979 21.237 -6.675 1 41.61 ? C19 A1H72 501 A 1 HETATM 10 C C21 A1H72 . . . C 3 -25.804 16.367 -5.264 1 38.71 ? C21 A1H72 501 A 1 HETATM 11 C C23 A1H72 . . . C 3 -25.602 17.492 -8.114 1 41 ? C23 A1H72 501 A 1 HETATM 12 C C25 A1H72 . . . C 3 -24.379 18.123 -10.325 1 42.25 ? C25 A1H72 501 A 1 HETATM 13 C C17 A1H72 . . . C 3 -28.267 17.049 -5.219 1 37.5 ? C17 A1H72 501 A 1 HETATM 14 C C7 A1H72 . . . C 3 -32.692 18.628 -4.934 1 34.55 ? C7 A1H72 501 A 1 HETATM 15 C C28 A1H72 . . . C 3 -34.086 18.738 -5.215 1 32.85 ? C28 A1H72 501 A 1 HETATM 16 C C4 A1H72 . . . C 3 -36.221 19.842 -5.878 1 37.48 ? C4 A1H72 501 A 1 HETATM 17 C C3 A1H72 . . . C 3 -36.941 21.084 -5.363 1 41.84 ? C3 A1H72 501 A 1 HETATM 18 C C2 A1H72 . . . C 3 -36.248 22.341 -5.874 1 36.49 ? C2 A1H72 501 A 1 HETATM 19 C C1 A1H72 . . . C 3 -34.797 22.341 -5.411 1 35.28 ? C1 A1H72 501 A 1 HETATM 20 C C16 A1H72 . . . C 3 -28.247 18.433 -4.54 1 40.27 ? C16 A1H72 501 A 1 HETATM 21 C C20 A1H72 . . . C 3 -27.023 16.764 -6.093 1 41.01 ? C20 A1H72 501 A 1 HETATM 22 C C22 A1H72 . . . C 3 -26.655 17.897 -7.075 1 37.74 ? C22 A1H72 501 A 1 HETATM 23 C C24 A1H72 . . . C 3 -25.449 18.483 -9.282 1 34.28 ? C24 A1H72 501 A 1 HETATM 24 C C26 A1H72 . . . C 3 -24.711 16.823 -11.037 1 40.49 ? C26 A1H72 501 A 1 HETATM 25 C C15 A1H72 . . . C 3 -29.727 18.695 -4.115 1 36.6 ? C15 A1H72 501 A 1 HETATM 26 C C27 A1H72 . . . C 3 -24.169 19.246 -11.328 1 41.87 ? C27 A1H72 501 A 1 HETATM 27 C C13 A1H72 . . . C 3 -29.689 16.949 -5.814 1 36.74 ? C13 A1H72 501 A 1 HETATM 28 O O4 A1H72 . . . C 3 -36.809 18.658 -5.365 1 45.03 ? O4 A1H72 501 A 1 HETATM 29 O O2 A1H72 . . . C 3 -36.944 21.082 -3.931 1 40.96 ? O2 A1H72 501 A 1 HETATM 30 O O1 A1H72 . . . C 3 -34.166 23.538 -5.84 1 38.35 ? O1 A1H72 501 A 1 HETATM 31 O O3 A1H72 . . . C 3 -23.133 17.907 -9.636 1 41.6 ? O3 A1H72 501 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #