data_9EZ6 # _model_server_result.job_id THMRk8n5I3zYhcYE2trmUA _model_server_result.datetime_utc '2025-03-09 13:01:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ez6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":406}' # _entry.id 9EZ6 # _exptl.entry_id 9EZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EZ6 _cell.length_a 67.802 _cell.length_b 99.032 _cell.length_c 100.841 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 R N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 155 A ASP 155 1_555 A N CSD 156 A CSD 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSD 156 A CSD 156 1_555 A N VAL 157 A VAL 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ASP 155 B ASP 155 1_555 B N CSD 156 B CSD 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C CSD 156 B CSD 156 1_555 B N VAL 157 B VAL 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C THC 1 C THC 1 1_555 C N PHE 2 C PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A O ASN 221 A ASN 221 1_555 Q NA NA . A NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A OD1 ASN 221 A ASN 221 1_555 Q NA NA . A NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 A O PHE 223 A PHE 223 1_555 Q NA NA . A NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 A O ASP 263 A ASP 263 1_555 Q NA NA . A NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc5 A OD1 ASP 263 A ASP 263 1_555 Q NA NA . A NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc6 Q NA NA . A NA 414 1_555 W O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc7 B O ASN 221 B ASN 221 1_555 V NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc8 B OD1 ASN 221 B ASN 221 1_555 V NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc9 B O PHE 223 B PHE 223 1_555 V NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc10 B O ASP 263 B ASP 263 1_555 V NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 B OD1 ASP 263 B ASP 263 1_555 V NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc12 V NA NA . B NA 405 1_555 X O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 9EZ6 _atom_sites.fract_transf_matrix[1][1] 0.014749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 DMS A 1 401 401 DMS DMS . E 4 EDO A 1 402 402 EDO EDO . F 3 DMS A 1 403 403 DMS DMS . G 4 EDO A 1 404 404 EDO EDO . H 4 EDO A 1 405 405 EDO EDO . I 4 EDO A 1 406 401 EDO EDO . J 5 PEG A 1 407 1 PEG PEG . K 4 EDO A 1 408 2 EDO EDO . L 4 EDO A 1 409 4 EDO EDO . M 5 PEG A 1 410 6 PEG PEG . N 4 EDO A 1 411 8 EDO EDO . O 4 EDO A 1 412 10 EDO EDO . P 4 EDO A 1 413 11 EDO EDO . Q 6 NA A 1 414 1 NA NA . R 4 EDO B 1 401 406 EDO EDO . S 7 GLN B 1 402 402 GLN GLN . T 4 EDO B 1 403 3 EDO EDO . U 4 EDO B 1 404 9 EDO EDO . V 6 NA B 1 405 2 NA NA . W 8 HOH A 1 501 65 HOH HOH . W 8 HOH A 2 502 58 HOH HOH . W 8 HOH A 3 503 66 HOH HOH . W 8 HOH A 4 504 192 HOH HOH . W 8 HOH A 5 505 114 HOH HOH . W 8 HOH A 6 506 16 HOH HOH . W 8 HOH A 7 507 42 HOH HOH . W 8 HOH A 8 508 90 HOH HOH . W 8 HOH A 9 509 110 HOH HOH . W 8 HOH A 10 510 33 HOH HOH . W 8 HOH A 11 511 144 HOH HOH . W 8 HOH A 12 512 46 HOH HOH . W 8 HOH A 13 513 183 HOH HOH . W 8 HOH A 14 514 11 HOH HOH . W 8 HOH A 15 515 19 HOH HOH . W 8 HOH A 16 516 28 HOH HOH . W 8 HOH A 17 517 95 HOH HOH . W 8 HOH A 18 518 54 HOH HOH . W 8 HOH A 19 519 202 HOH HOH . W 8 HOH A 20 520 2 HOH HOH . W 8 HOH A 21 521 40 HOH HOH . W 8 HOH A 22 522 83 HOH HOH . W 8 HOH A 23 523 36 HOH HOH . W 8 HOH A 24 524 69 HOH HOH . W 8 HOH A 25 525 71 HOH HOH . W 8 HOH A 26 526 75 HOH HOH . W 8 HOH A 27 527 99 HOH HOH . W 8 HOH A 28 528 37 HOH HOH . W 8 HOH A 29 529 113 HOH HOH . W 8 HOH A 30 530 197 HOH HOH . W 8 HOH A 31 531 103 HOH HOH . W 8 HOH A 32 532 41 HOH HOH . W 8 HOH A 33 533 49 HOH HOH . W 8 HOH A 34 534 190 HOH HOH . W 8 HOH A 35 535 72 HOH HOH . W 8 HOH A 36 536 111 HOH HOH . W 8 HOH A 37 537 184 HOH HOH . W 8 HOH A 38 538 10 HOH HOH . W 8 HOH A 39 539 14 HOH HOH . W 8 HOH A 40 540 5 HOH HOH . W 8 HOH A 41 541 85 HOH HOH . W 8 HOH A 42 542 9 HOH HOH . W 8 HOH A 43 543 89 HOH HOH . W 8 HOH A 44 544 130 HOH HOH . W 8 HOH A 45 545 79 HOH HOH . W 8 HOH A 46 546 78 HOH HOH . W 8 HOH A 47 547 27 HOH HOH . W 8 HOH A 48 548 105 HOH HOH . W 8 HOH A 49 549 22 HOH HOH . W 8 HOH A 50 550 21 HOH HOH . W 8 HOH A 51 551 8 HOH HOH . W 8 HOH A 52 552 34 HOH HOH . W 8 HOH A 53 553 161 HOH HOH . W 8 HOH A 54 554 15 HOH HOH . W 8 HOH A 55 555 68 HOH HOH . W 8 HOH A 56 556 98 HOH HOH . W 8 HOH A 57 557 122 HOH HOH . W 8 HOH A 58 558 203 HOH HOH . W 8 HOH A 59 559 82 HOH HOH . W 8 HOH A 60 560 96 HOH HOH . W 8 HOH A 61 561 116 HOH HOH . W 8 HOH A 62 562 26 HOH HOH . W 8 HOH A 63 563 170 HOH HOH . W 8 HOH A 64 564 93 HOH HOH . W 8 HOH A 65 565 1 HOH HOH . W 8 HOH A 66 566 20 HOH HOH . W 8 HOH A 67 567 4 HOH HOH . W 8 HOH A 68 568 18 HOH HOH . W 8 HOH A 69 569 102 HOH HOH . W 8 HOH A 70 570 153 HOH HOH . W 8 HOH A 71 571 23 HOH HOH . W 8 HOH A 72 572 176 HOH HOH . W 8 HOH A 73 573 32 HOH HOH . W 8 HOH A 74 574 53 HOH HOH . W 8 HOH A 75 575 134 HOH HOH . W 8 HOH A 76 576 38 HOH HOH . W 8 HOH A 77 577 56 HOH HOH . W 8 HOH A 78 578 108 HOH HOH . W 8 HOH A 79 579 44 HOH HOH . W 8 HOH A 80 580 112 HOH HOH . W 8 HOH A 81 581 51 HOH HOH . W 8 HOH A 82 582 157 HOH HOH . W 8 HOH A 83 583 127 HOH HOH . W 8 HOH A 84 584 193 HOH HOH . W 8 HOH A 85 585 135 HOH HOH . W 8 HOH A 86 586 109 HOH HOH . W 8 HOH A 87 587 140 HOH HOH . W 8 HOH A 88 588 74 HOH HOH . W 8 HOH A 89 589 43 HOH HOH . W 8 HOH A 90 590 164 HOH HOH . W 8 HOH A 91 591 194 HOH HOH . W 8 HOH A 92 592 154 HOH HOH . W 8 HOH A 93 593 156 HOH HOH . W 8 HOH A 94 594 107 HOH HOH . W 8 HOH A 95 595 129 HOH HOH . W 8 HOH A 96 596 64 HOH HOH . W 8 HOH A 97 597 169 HOH HOH . W 8 HOH A 98 598 167 HOH HOH . W 8 HOH A 99 599 198 HOH HOH . W 8 HOH A 100 600 195 HOH HOH . W 8 HOH A 101 601 45 HOH HOH . W 8 HOH A 102 602 173 HOH HOH . W 8 HOH A 103 603 160 HOH HOH . W 8 HOH A 104 604 175 HOH HOH . W 8 HOH A 105 605 191 HOH HOH . W 8 HOH A 106 606 147 HOH HOH . W 8 HOH A 107 607 61 HOH HOH . W 8 HOH A 108 608 185 HOH HOH . W 8 HOH A 109 609 119 HOH HOH . W 8 HOH A 110 610 166 HOH HOH . W 8 HOH A 111 611 155 HOH HOH . W 8 HOH A 112 612 104 HOH HOH . W 8 HOH A 113 613 139 HOH HOH . W 8 HOH A 114 614 168 HOH HOH . W 8 HOH A 115 615 163 HOH HOH . W 8 HOH A 116 616 128 HOH HOH . W 8 HOH A 117 617 145 HOH HOH . W 8 HOH A 118 618 159 HOH HOH . X 8 HOH B 1 501 52 HOH HOH . X 8 HOH B 2 502 123 HOH HOH . X 8 HOH B 3 503 150 HOH HOH . X 8 HOH B 4 504 48 HOH HOH . X 8 HOH B 5 505 88 HOH HOH . X 8 HOH B 6 506 25 HOH HOH . X 8 HOH B 7 507 29 HOH HOH . X 8 HOH B 8 508 57 HOH HOH . X 8 HOH B 9 509 70 HOH HOH . X 8 HOH B 10 510 162 HOH HOH . X 8 HOH B 11 511 62 HOH HOH . X 8 HOH B 12 512 67 HOH HOH . X 8 HOH B 13 513 141 HOH HOH . X 8 HOH B 14 514 142 HOH HOH . X 8 HOH B 15 515 7 HOH HOH . X 8 HOH B 16 516 63 HOH HOH . X 8 HOH B 17 517 76 HOH HOH . X 8 HOH B 18 518 131 HOH HOH . X 8 HOH B 19 519 115 HOH HOH . X 8 HOH B 20 520 13 HOH HOH . X 8 HOH B 21 521 17 HOH HOH . X 8 HOH B 22 522 12 HOH HOH . X 8 HOH B 23 523 86 HOH HOH . X 8 HOH B 24 524 80 HOH HOH . X 8 HOH B 25 525 35 HOH HOH . X 8 HOH B 26 526 92 HOH HOH . X 8 HOH B 27 527 120 HOH HOH . X 8 HOH B 28 528 94 HOH HOH . X 8 HOH B 29 529 81 HOH HOH . X 8 HOH B 30 530 24 HOH HOH . X 8 HOH B 31 531 31 HOH HOH . X 8 HOH B 32 532 30 HOH HOH . X 8 HOH B 33 533 97 HOH HOH . X 8 HOH B 34 534 121 HOH HOH . X 8 HOH B 35 535 177 HOH HOH . X 8 HOH B 36 536 117 HOH HOH . X 8 HOH B 37 537 133 HOH HOH . X 8 HOH B 38 538 126 HOH HOH . X 8 HOH B 39 539 125 HOH HOH . X 8 HOH B 40 540 118 HOH HOH . X 8 HOH B 41 541 50 HOH HOH . X 8 HOH B 42 542 138 HOH HOH . X 8 HOH B 43 543 47 HOH HOH . X 8 HOH B 44 544 136 HOH HOH . X 8 HOH B 45 545 59 HOH HOH . X 8 HOH B 46 546 204 HOH HOH . X 8 HOH B 47 547 189 HOH HOH . X 8 HOH B 48 548 180 HOH HOH . X 8 HOH B 49 549 84 HOH HOH . X 8 HOH B 50 550 179 HOH HOH . X 8 HOH B 51 551 199 HOH HOH . X 8 HOH B 52 552 178 HOH HOH . X 8 HOH B 53 553 172 HOH HOH . X 8 HOH B 54 554 181 HOH HOH . X 8 HOH B 55 555 187 HOH HOH . X 8 HOH B 56 556 200 HOH HOH . X 8 HOH B 57 557 124 HOH HOH . X 8 HOH B 58 558 174 HOH HOH . X 8 HOH B 59 559 188 HOH HOH . X 8 HOH B 60 560 73 HOH HOH . Y 8 HOH C 1 201 132 HOH HOH . Y 8 HOH C 2 202 182 HOH HOH . Y 8 HOH C 3 203 100 HOH HOH . Y 8 HOH C 4 204 186 HOH HOH . Y 8 HOH C 5 205 137 HOH HOH . Y 8 HOH C 6 206 146 HOH HOH . Y 8 HOH C 7 207 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 4 -20.07 -5.85 -15.168 1 81.29 ? C1 EDO 406 A 1 HETATM 2 O O1 EDO . . . I 4 -21.498 -5.869 -14.962 1 85.49 ? O1 EDO 406 A 1 HETATM 3 C C2 EDO . . . I 4 -19.456 -7.118 -14.568 1 75.32 ? C2 EDO 406 A 1 HETATM 4 O O2 EDO . . . I 4 -18.242 -7.43 -15.274 1 74.53 ? O2 EDO 406 A 1 HETATM 5 H H11 EDO . . . I 4 -19.638 -4.967 -14.693 1 97.55 ? H11 EDO 406 A 1 HETATM 6 H H12 EDO . . . I 4 -19.849 -5.799 -16.236 1 97.55 ? H12 EDO 406 A 1 HETATM 7 H HO1 EDO . . . I 4 -21.892 -5.08 -15.359 1 102.6 ? HO1 EDO 406 A 1 HETATM 8 H H21 EDO . . . I 4 -19.243 -6.963 -13.508 1 90.39 ? H21 EDO 406 A 1 HETATM 9 H H22 EDO . . . I 4 -20.16 -7.948 -14.651 1 90.39 ? H22 EDO 406 A 1 HETATM 10 H HO2 EDO . . . I 4 -17.854 -8.237 -14.907 1 89.44 ? HO2 EDO 406 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #