data_9EZJ # _model_server_result.job_id '_bOTfV0TyMQrnE_GwBJx1g' _model_server_result.datetime_utc '2024-10-11 01:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ezj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 9EZJ # _exptl.entry_id 9EZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.631 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (9~{R})-2-methoxy-4-oxidanylidene-9-[[(1~{S})-1-phenylethyl]-[(2-propan-2-ylphenyl)carbamoyl]amino]-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidine-3-carboxylate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EZJ _cell.length_a 133.793 _cell.length_b 156.159 _cell.length_c 90.655 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C30 H36 N4 O5' _chem_comp.formula_weight 532.631 _chem_comp.id A1H8G _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (9~{R})-2-methoxy-4-oxidanylidene-9-[[(1~{S})-1-phenylethyl]-[(2-propan-2-ylphenyl)carbamoyl]amino]-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidine-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 A1H8G sing 1 n n C1 O A1H8G sing 2 n n O C2 A1H8G sing 3 n n C3 C2 A1H8G sing 4 n n C3 C4 A1H8G sing 5 n n C4 N A1H8G sing 6 n n N C5 A1H8G sing 7 n n C5 C6 A1H8G sing 8 n n C6 C7 A1H8G sing 9 n n C7 C8 A1H8G sing 10 n n N1 C8 A1H8G sing 11 n n C9 N1 A1H8G sing 12 n n C10 C9 A1H8G sing 13 n n C11 C9 A1H8G sing 14 n n C11 C12 A1H8G doub 15 n y C12 C13 A1H8G sing 16 n y C13 C14 A1H8G doub 17 n y C14 C15 A1H8G sing 18 n y C15 C16 A1H8G doub 19 n y C16 C11 A1H8G sing 20 n y C17 N1 A1H8G sing 21 n n N2 C17 A1H8G sing 22 n n C18 N2 A1H8G sing 23 n n C18 C19 A1H8G doub 24 n y C20 C19 A1H8G sing 25 n n C21 C20 A1H8G sing 26 n n C22 C20 A1H8G sing 27 n n C19 C23 A1H8G sing 28 n y C23 C24 A1H8G doub 29 n y C24 C25 A1H8G sing 30 n y C25 C26 A1H8G doub 31 n y C26 C18 A1H8G sing 32 n y O1 C17 A1H8G doub 33 n n N C27 A1H8G sing 34 n n C8 C27 A1H8G sing 35 n n C27 N3 A1H8G doub 36 n n O2 C4 A1H8G doub 37 n n C28 C3 A1H8G doub 38 n n N3 C28 A1H8G sing 39 n n O3 C28 A1H8G sing 40 n n C29 O3 A1H8G sing 41 n n C2 O4 A1H8G doub 42 n n C7 H11 A1H8G sing 43 n n C7 H12 A1H8G sing 44 n n C8 H A1H8G sing 45 n n N2 H21 A1H8G sing 46 n n C9 H1 A1H8G sing 47 n n C1 H6 A1H8G sing 48 n n C1 H5 A1H8G sing 49 n n C5 H7 A1H8G sing 50 n n C5 H8 A1H8G sing 51 n n C6 H9 A1H8G sing 52 n n C6 H10 A1H8G sing 53 n n C H4 A1H8G sing 54 n n C H2 A1H8G sing 55 n n C H3 A1H8G sing 56 n n C29 H34 A1H8G sing 57 n n C29 H33 A1H8G sing 58 n n C29 H35 A1H8G sing 59 n n C16 H20 A1H8G sing 60 n n C15 H19 A1H8G sing 61 n n C14 H18 A1H8G sing 62 n n C13 H17 A1H8G sing 63 n n C12 H16 A1H8G sing 64 n n C10 H15 A1H8G sing 65 n n C10 H13 A1H8G sing 66 n n C10 H14 A1H8G sing 67 n n C26 H32 A1H8G sing 68 n n C25 H31 A1H8G sing 69 n n C24 H30 A1H8G sing 70 n n C23 H29 A1H8G sing 71 n n C20 H22 A1H8G sing 72 n n C22 H26 A1H8G sing 73 n n C22 H28 A1H8G sing 74 n n C22 H27 A1H8G sing 75 n n C21 H23 A1H8G sing 76 n n C21 H24 A1H8G sing 77 n n C21 H25 A1H8G sing 78 n n # _atom_sites.entry_id 9EZJ _atom_sites.fract_transf_matrix[1][1] 0.007474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZIQ A 1 501 501 ZIQ LI2 . F 3 A1H8G A 1 502 601 A1H8G XXX . G 2 ZIQ B 1 501 501 ZIQ LI2 . H 3 A1H8G B 1 502 601 A1H8G XXX . I 2 ZIQ C 1 501 501 ZIQ LI2 . J 3 A1H8G C 1 502 601 A1H8G XXX . K 2 ZIQ D 1 501 501 ZIQ LI2 . L 3 A1H8G D 1 502 601 A1H8G XXX . M 4 HOH A 1 601 7 HOH HOH . M 4 HOH A 2 602 8 HOH HOH . M 4 HOH A 3 603 4 HOH HOH . N 4 HOH B 1 601 5 HOH HOH . N 4 HOH B 2 602 6 HOH HOH . O 4 HOH C 1 601 1 HOH HOH . O 4 HOH C 2 602 2 HOH HOH . P 4 HOH D 1 601 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1H8G . . . F 3 18.743 59.812 -37.887 1 28 ? N1 A1H8G 502 A 1 HETATM 2 C C7 A1H8G . . . F 3 19.287 62.139 -37.024 1 27.46 ? C7 A1H8G 502 A 1 HETATM 3 C C8 A1H8G . . . F 3 18.709 61.261 -38.16 1 27.74 ? C8 A1H8G 502 A 1 HETATM 4 N N2 A1H8G . . . F 3 17.548 57.917 -37.205 1 28.96 ? N2 A1H8G 502 A 1 HETATM 5 C C9 A1H8G . . . F 3 19.766 59.005 -38.593 1 27.41 ? C9 A1H8G 502 A 1 HETATM 6 O O1 A1H8G . . . F 3 17.244 59.905 -36.195 1 28.72 ? O1 A1H8G 502 A 1 HETATM 7 C C1 A1H8G . . . F 3 11.122 61.629 -37.696 1 27.96 ? C1 A1H8G 502 A 1 HETATM 8 C C5 A1H8G . . . F 3 17.188 63.491 -36.791 1 27.74 ? C5 A1H8G 502 A 1 HETATM 9 C C6 A1H8G . . . F 3 18.689 63.543 -37.018 1 27.44 ? C6 A1H8G 502 A 1 HETATM 10 N N3 A1H8G . . . F 3 16.755 60.908 -39.439 1 27.94 ? N3 A1H8G 502 A 1 HETATM 11 C C4 A1H8G . . . F 3 15.178 62.782 -37.991 1 27.41 ? C4 A1H8G 502 A 1 HETATM 12 O O4 A1H8G . . . F 3 12.444 61.959 -40.033 1 27.5 ? O4 A1H8G 502 A 1 HETATM 13 C C3 A1H8G . . . F 3 14.576 61.884 -38.961 1 27.59 ? C3 A1H8G 502 A 1 HETATM 14 O O3 A1H8G . . . F 3 14.86 60.271 -40.6 1 27.42 ? O3 A1H8G 502 A 1 HETATM 15 C C2 A1H8G . . . F 3 13.096 61.816 -39.027 1 27.53 ? C2 A1H8G 502 A 1 HETATM 16 O O A1H8G . . . F 3 12.569 61.548 -37.827 1 27.63 ? O A1H8G 502 A 1 HETATM 17 C C A1H8G . . . F 3 10.836 62.429 -36.473 1 28.37 ? C A1H8G 502 A 1 HETATM 18 C C28 A1H8G . . . F 3 15.423 61.029 -39.645 1 27.7 ? C28 A1H8G 502 A 1 HETATM 19 C C29 A1H8G . . . F 3 15.592 59.098 -41.024 1 27.19 ? C29 A1H8G 502 A 1 HETATM 20 C C27 A1H8G . . . F 3 17.297 61.636 -38.516 1 27.86 ? C27 A1H8G 502 A 1 HETATM 21 N N A1H8G . . . F 3 16.556 62.608 -37.794 1 27.67 ? N A1H8G 502 A 1 HETATM 22 O O2 A1H8G . . . F 3 14.57 63.66 -37.384 1 27.13 ? O2 A1H8G 502 A 1 HETATM 23 C C11 A1H8G . . . F 3 21.149 59.594 -38.362 1 27.38 ? C11 A1H8G 502 A 1 HETATM 24 C C16 A1H8G . . . F 3 21.709 59.564 -37.091 1 27.32 ? C16 A1H8G 502 A 1 HETATM 25 C C15 A1H8G . . . F 3 22.919 60.185 -36.838 1 27.27 ? C15 A1H8G 502 A 1 HETATM 26 C C14 A1H8G . . . F 3 23.592 60.83 -37.851 1 27.29 ? C14 A1H8G 502 A 1 HETATM 27 C C13 A1H8G . . . F 3 23.056 60.853 -39.121 1 27.34 ? C13 A1H8G 502 A 1 HETATM 28 C C12 A1H8G . . . F 3 21.844 60.236 -39.377 1 27.38 ? C12 A1H8G 502 A 1 HETATM 29 C C10 A1H8G . . . F 3 19.383 58.806 -40.055 1 27.09 ? C10 A1H8G 502 A 1 HETATM 30 C C17 A1H8G . . . F 3 17.806 59.241 -37.047 1 28.53 ? C17 A1H8G 502 A 1 HETATM 31 C C18 A1H8G . . . F 3 16.774 57.125 -36.316 1 29.63 ? C18 A1H8G 502 A 1 HETATM 32 C C26 A1H8G . . . F 3 17.282 56.795 -35.057 1 29.9 ? C26 A1H8G 502 A 1 HETATM 33 C C25 A1H8G . . . F 3 16.536 56.013 -34.19 1 29.85 ? C25 A1H8G 502 A 1 HETATM 34 C C24 A1H8G . . . F 3 15.297 55.551 -34.567 1 29.79 ? C24 A1H8G 502 A 1 HETATM 35 C C23 A1H8G . . . F 3 14.784 55.876 -35.809 1 29.8 ? C23 A1H8G 502 A 1 HETATM 36 C C19 A1H8G . . . F 3 15.5 56.675 -36.697 1 29.78 ? C19 A1H8G 502 A 1 HETATM 37 C C20 A1H8G . . . F 3 14.844 57.102 -38.001 1 29.97 ? C20 A1H8G 502 A 1 HETATM 38 C C22 A1H8G . . . F 3 13.828 58.219 -37.779 1 29.76 ? C22 A1H8G 502 A 1 HETATM 39 C C21 A1H8G . . . F 3 14.174 55.93 -38.718 1 30.18 ? C21 A1H8G 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 39 #