data_9F0E # _model_server_result.job_id '_AzVfXJsYwgFNhrEFKe0hA' _model_server_result.datetime_utc '2025-03-04 08:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 9F0E # _exptl.entry_id 9F0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.14 _cell.angle_gamma 90 _cell.entry_id 9F0E _cell.length_a 108.697 _cell.length_b 34.755 _cell.length_c 56.433 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 C,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.935255 0 55.551545 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DC-DA MISPAIR' hydrog1 C N4 DC 9 C DC 9 1_555 C N1 DA 13 C DA 13 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog2 C N2 DG 10 C DG 10 1_555 C O2 DT 12 C DT 12 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DG MISPAIR' hydrog3 C O2 DT 12 C DT 12 1_555 C N2 DG 10 C DG 10 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DC MISPAIR' hydrog4 C N1 DA 13 C DA 13 1_555 C N4 DC 9 C DC 9 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 386 n n P O2 PO4 sing 387 n n P O3 PO4 sing 388 n n P O4 PO4 sing 389 n n # _atom_sites.entry_id 9F0E _atom_sites.fract_transf_matrix[1][1] 0.0092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001645 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PO4 A 1 101 2 PO4 PO4 . E 3 PO4 B 1 101 1 PO4 PO4 . F 3 PO4 B 1 102 3 PO4 PO4 . G 4 HOH A 1 201 52 HOH HOH . G 4 HOH A 2 202 20 HOH HOH . G 4 HOH A 3 203 25 HOH HOH . G 4 HOH A 4 204 17 HOH HOH . G 4 HOH A 5 205 8 HOH HOH . G 4 HOH A 6 206 60 HOH HOH . G 4 HOH A 7 207 4 HOH HOH . G 4 HOH A 8 208 22 HOH HOH . G 4 HOH A 9 209 44 HOH HOH . G 4 HOH A 10 210 24 HOH HOH . G 4 HOH A 11 211 54 HOH HOH . G 4 HOH A 12 212 65 HOH HOH . G 4 HOH A 13 213 29 HOH HOH . G 4 HOH A 14 214 13 HOH HOH . G 4 HOH A 15 215 64 HOH HOH . G 4 HOH A 16 216 12 HOH HOH . G 4 HOH A 17 217 42 HOH HOH . G 4 HOH A 18 218 66 HOH HOH . G 4 HOH A 19 219 53 HOH HOH . G 4 HOH A 20 220 43 HOH HOH . G 4 HOH A 21 221 16 HOH HOH . G 4 HOH A 22 222 34 HOH HOH . G 4 HOH A 23 223 11 HOH HOH . G 4 HOH A 24 224 33 HOH HOH . G 4 HOH A 25 225 59 HOH HOH . G 4 HOH A 26 226 46 HOH HOH . G 4 HOH A 27 227 19 HOH HOH . G 4 HOH A 28 228 57 HOH HOH . G 4 HOH A 29 229 61 HOH HOH . G 4 HOH A 30 230 56 HOH HOH . G 4 HOH A 31 231 62 HOH HOH . G 4 HOH A 32 232 51 HOH HOH . H 4 HOH B 1 201 35 HOH HOH . H 4 HOH B 2 202 10 HOH HOH . H 4 HOH B 3 203 30 HOH HOH . H 4 HOH B 4 204 49 HOH HOH . H 4 HOH B 5 205 15 HOH HOH . H 4 HOH B 6 206 1 HOH HOH . H 4 HOH B 7 207 5 HOH HOH . H 4 HOH B 8 208 38 HOH HOH . H 4 HOH B 9 209 37 HOH HOH . H 4 HOH B 10 210 41 HOH HOH . H 4 HOH B 11 211 48 HOH HOH . H 4 HOH B 12 212 9 HOH HOH . H 4 HOH B 13 213 55 HOH HOH . H 4 HOH B 14 214 39 HOH HOH . H 4 HOH B 15 215 7 HOH HOH . H 4 HOH B 16 216 18 HOH HOH . H 4 HOH B 17 217 27 HOH HOH . H 4 HOH B 18 218 36 HOH HOH . H 4 HOH B 19 219 45 HOH HOH . H 4 HOH B 20 220 6 HOH HOH . H 4 HOH B 21 221 2 HOH HOH . H 4 HOH B 22 222 14 HOH HOH . H 4 HOH B 23 223 3 HOH HOH . H 4 HOH B 24 224 21 HOH HOH . H 4 HOH B 25 225 26 HOH HOH . H 4 HOH B 26 226 63 HOH HOH . H 4 HOH B 27 227 23 HOH HOH . H 4 HOH B 28 228 28 HOH HOH . H 4 HOH B 29 229 31 HOH HOH . H 4 HOH B 30 230 50 HOH HOH . H 4 HOH B 31 231 32 HOH HOH . I 4 HOH C 1 101 58 HOH HOH . I 4 HOH C 2 102 47 HOH HOH . I 4 HOH C 3 103 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 -20.309 -18.408 -8.04 1 58.9 ? P PO4 101 A 1 HETATM 2 O O1 PO4 . . . D 3 -19.905 -17.552 -9.241 1 60.54 ? O1 PO4 101 A 1 HETATM 3 O O2 PO4 . . . D 3 -19.048 -18.794 -7.257 1 50.84 ? O2 PO4 101 A 1 HETATM 4 O O3 PO4 . . . D 3 -21.023 -19.664 -8.529 1 54.11 ? O3 PO4 101 A 1 HETATM 5 O O4 PO4 . . . D 3 -21.257 -17.609 -7.148 1 55.76 ? O4 PO4 101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #