data_9F1J # _model_server_result.job_id lsgXFcp7MXgNm609ZIZS4w _model_server_result.datetime_utc '2024-10-18 21:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 9F1J # _exptl.entry_id 9F1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1021.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-[2-[2-[2-[2-[2-[2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]oxyethanoylamino]ethoxy]ethoxy]ethoxy]ethyl]-4-[4-[2-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(2-morpholin-4-ylethyl)benzimidazol-2-yl]ethyl]phenoxy]butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9F1J _cell.length_a 38.881 _cell.length_b 50.473 _cell.length_c 58.494 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C53 H64 N8 O13' _chem_comp.formula_weight 1021.121 _chem_comp.id A1H84 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-[2-[2-[2-[2-[2-[2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]oxyethanoylamino]ethoxy]ethoxy]ethoxy]ethyl]-4-[4-[2-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(2-morpholin-4-ylethyl)benzimidazol-2-yl]ethyl]phenoxy]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O43 C46 A1H84 sing 1 n n O43 C45 A1H84 sing 2 n n C46 C47 A1H84 sing 3 n n C45 C44 A1H84 sing 4 n n C47 N43 A1H84 sing 5 n n C44 N43 A1H84 sing 6 n n O20 C20 A1H84 doub 7 n n N43 C43 A1H84 sing 8 n n C19 C18 A1H84 sing 9 n n C19 N20 A1H84 sing 10 n n O18 C18 A1H84 sing 11 n n C20 N20 A1H84 sing 12 n n C20 C21 A1H84 sing 13 n n C43 C42 A1H84 sing 14 n n C21 C22 A1H84 sing 15 n n C42 N42 A1H84 sing 16 n n C22 C23 A1H84 sing 17 n n C33 C34 A1H84 doub 18 n y C33 C32 A1H84 sing 19 n y C23 O24 A1H84 sing 20 n n N42 C32 A1H84 sing 21 n y N42 C30 A1H84 sing 22 n y C34 C35 A1H84 sing 23 n y C32 C31 A1H84 doub 24 n y C25 C26 A1H84 doub 25 n y C25 C24 A1H84 sing 26 n y C38 C37 A1H84 sing 27 n n C26 C27 A1H84 sing 28 n y O24 C24 A1H84 sing 29 n n C30 C29 A1H84 sing 30 n n C30 N31 A1H84 doub 31 n y C24 C49 A1H84 doub 32 n y C29 C28 A1H84 sing 33 n n C35 C36 A1H84 sing 34 n n C35 C41 A1H84 doub 35 n y C31 N31 A1H84 sing 36 n y C31 C41 A1H84 sing 37 n y C37 C36 A1H84 doub 38 n y C37 O37 A1H84 sing 39 n y C27 C28 A1H84 sing 40 n n C27 C48 A1H84 doub 41 n y C36 C39 A1H84 sing 42 n y O37 N37 A1H84 sing 43 n y C49 C48 A1H84 sing 44 n y C39 N37 A1H84 doub 45 n y C39 C40 A1H84 sing 46 n n O18 C17 A1H84 sing 47 n n C17 C16 A1H84 sing 48 n n C16 O16 A1H84 sing 49 n n O16 C15 A1H84 sing 50 n n C15 C14 A1H84 sing 51 n n C14 O14 A1H84 sing 52 n n C28 H1 A1H84 sing 53 n n C28 H2 A1H84 sing 54 n n C29 H3 A1H84 sing 55 n n C29 H4 A1H84 sing 56 n n C26 H5 A1H84 sing 57 n n C25 H6 A1H84 sing 58 n n C23 H7 A1H84 sing 59 n n C23 H8 A1H84 sing 60 n n C22 H10 A1H84 sing 61 n n C22 H11 A1H84 sing 62 n n C21 H16 A1H84 sing 63 n n C21 H17 A1H84 sing 64 n n C33 H18 A1H84 sing 65 n n C34 H19 A1H84 sing 66 n n C38 H20 A1H84 sing 67 n n C38 H21 A1H84 sing 68 n n C38 H22 A1H84 sing 69 n n C40 H23 A1H84 sing 70 n n C40 H24 A1H84 sing 71 n n C40 H25 A1H84 sing 72 n n C41 H26 A1H84 sing 73 n n C42 H27 A1H84 sing 74 n n C42 H28 A1H84 sing 75 n n C43 H29 A1H84 sing 76 n n C43 H30 A1H84 sing 77 n n C44 H31 A1H84 sing 78 n n C44 H32 A1H84 sing 79 n n C45 H33 A1H84 sing 80 n n C45 H34 A1H84 sing 81 n n C46 H35 A1H84 sing 82 n n C46 H36 A1H84 sing 83 n n C47 H37 A1H84 sing 84 n n C47 H38 A1H84 sing 85 n n C48 H39 A1H84 sing 86 n n C49 H40 A1H84 sing 87 n n O14 C13 A1H84 sing 88 n n C13 C12 A1H84 sing 89 n n C12 N12 A1H84 sing 90 n n N12 C11 A1H84 sing 91 n n C11 O11 A1H84 doub 92 n n C11 C10 A1H84 sing 93 n n C10 O10 A1H84 sing 94 n n O10 CA A1H84 sing 95 n n CD CC A1H84 doub 96 n y CC CB A1H84 sing 97 n y CB CA A1H84 doub 98 n y CA CE A1H84 sing 99 n y CD CF A1H84 sing 100 n y CE CF A1H84 doub 101 n y CF CG A1H84 sing 102 n n CG NG A1H84 sing 103 n n NG CH A1H84 sing 104 n n CH CE A1H84 sing 105 n n CD H56 A1H84 sing 106 n n CC H57 A1H84 sing 107 n n CB H58 A1H84 sing 108 n n NG CI A1H84 sing 109 n n CG OG A1H84 doub 110 n n CH OH A1H84 doub 111 n n N20 H9 A1H84 sing 112 n n C18 H12 A1H84 sing 113 n n C18 H13 A1H84 sing 114 n n C19 H14 A1H84 sing 115 n n C19 H15 A1H84 sing 116 n n C17 H41 A1H84 sing 117 n n C17 H42 A1H84 sing 118 n n C16 H43 A1H84 sing 119 n n C16 H44 A1H84 sing 120 n n C15 H45 A1H84 sing 121 n n C15 H46 A1H84 sing 122 n n C14 H47 A1H84 sing 123 n n C14 H48 A1H84 sing 124 n n C13 H49 A1H84 sing 125 n n C13 H50 A1H84 sing 126 n n C12 H51 A1H84 sing 127 n n C12 H52 A1H84 sing 128 n n N12 H53 A1H84 sing 129 n n C10 H54 A1H84 sing 130 n n C10 H55 A1H84 sing 131 n n CI CJ A1H84 sing 132 n n CJ NK A1H84 sing 133 n n NK CL A1H84 sing 134 n n CL CM A1H84 sing 135 n n CM CN A1H84 sing 136 n n CN CI A1H84 sing 137 n n CJ OJ A1H84 doub 138 n n CL OL A1H84 doub 139 n n CI H59 A1H84 sing 140 n n NK H60 A1H84 sing 141 n n CM H61 A1H84 sing 142 n n CM H62 A1H84 sing 143 n n CN H63 A1H84 sing 144 n n CN H64 A1H84 sing 145 n n # _atom_sites.entry_id 9F1J _atom_sites.fract_transf_matrix[1][1] 0.02572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 301 EDO EDO . C 2 EDO A 1 302 501 EDO EDO . D 3 A1H84 A 1 303 401 A1H84 078 . E 4 HOH A 1 401 64 HOH HOH . E 4 HOH A 2 402 49 HOH HOH . E 4 HOH A 3 403 121 HOH HOH . E 4 HOH A 4 404 132 HOH HOH . E 4 HOH A 5 405 124 HOH HOH . E 4 HOH A 6 406 123 HOH HOH . E 4 HOH A 7 407 101 HOH HOH . E 4 HOH A 8 408 149 HOH HOH . E 4 HOH A 9 409 133 HOH HOH . E 4 HOH A 10 410 38 HOH HOH . E 4 HOH A 11 411 150 HOH HOH . E 4 HOH A 12 412 151 HOH HOH . E 4 HOH A 13 413 152 HOH HOH . E 4 HOH A 14 414 75 HOH HOH . E 4 HOH A 15 415 113 HOH HOH . E 4 HOH A 16 416 5 HOH HOH . E 4 HOH A 17 417 40 HOH HOH . E 4 HOH A 18 418 91 HOH HOH . E 4 HOH A 19 419 39 HOH HOH . E 4 HOH A 20 420 148 HOH HOH . E 4 HOH A 21 421 118 HOH HOH . E 4 HOH A 22 422 98 HOH HOH . E 4 HOH A 23 423 34 HOH HOH . E 4 HOH A 24 424 8 HOH HOH . E 4 HOH A 25 425 45 HOH HOH . E 4 HOH A 26 426 79 HOH HOH . E 4 HOH A 27 427 23 HOH HOH . E 4 HOH A 28 428 61 HOH HOH . E 4 HOH A 29 429 31 HOH HOH . E 4 HOH A 30 430 47 HOH HOH . E 4 HOH A 31 431 67 HOH HOH . E 4 HOH A 32 432 1 HOH HOH . E 4 HOH A 33 433 63 HOH HOH . E 4 HOH A 34 434 2 HOH HOH . E 4 HOH A 35 435 51 HOH HOH . E 4 HOH A 36 436 87 HOH HOH . E 4 HOH A 37 437 96 HOH HOH . E 4 HOH A 38 438 62 HOH HOH . E 4 HOH A 39 439 37 HOH HOH . E 4 HOH A 40 440 112 HOH HOH . E 4 HOH A 41 441 81 HOH HOH . E 4 HOH A 42 442 10 HOH HOH . E 4 HOH A 43 443 126 HOH HOH . E 4 HOH A 44 444 127 HOH HOH . E 4 HOH A 45 445 131 HOH HOH . E 4 HOH A 46 446 30 HOH HOH . E 4 HOH A 47 447 109 HOH HOH . E 4 HOH A 48 448 16 HOH HOH . E 4 HOH A 49 449 12 HOH HOH . E 4 HOH A 50 450 129 HOH HOH . E 4 HOH A 51 451 48 HOH HOH . E 4 HOH A 52 452 56 HOH HOH . E 4 HOH A 53 453 95 HOH HOH . E 4 HOH A 54 454 99 HOH HOH . E 4 HOH A 55 455 125 HOH HOH . E 4 HOH A 56 456 120 HOH HOH . E 4 HOH A 57 457 138 HOH HOH . E 4 HOH A 58 458 35 HOH HOH . E 4 HOH A 59 459 142 HOH HOH . E 4 HOH A 60 460 137 HOH HOH . E 4 HOH A 61 461 105 HOH HOH . E 4 HOH A 62 462 145 HOH HOH . E 4 HOH A 63 463 32 HOH HOH . E 4 HOH A 64 464 46 HOH HOH . E 4 HOH A 65 465 42 HOH HOH . E 4 HOH A 66 466 9 HOH HOH . E 4 HOH A 67 467 26 HOH HOH . E 4 HOH A 68 468 27 HOH HOH . E 4 HOH A 69 469 7 HOH HOH . E 4 HOH A 70 470 33 HOH HOH . E 4 HOH A 71 471 97 HOH HOH . E 4 HOH A 72 472 72 HOH HOH . E 4 HOH A 73 473 3 HOH HOH . E 4 HOH A 74 474 111 HOH HOH . E 4 HOH A 75 475 4 HOH HOH . E 4 HOH A 76 476 89 HOH HOH . E 4 HOH A 77 477 69 HOH HOH . E 4 HOH A 78 478 146 HOH HOH . E 4 HOH A 79 479 57 HOH HOH . E 4 HOH A 80 480 74 HOH HOH . E 4 HOH A 81 481 59 HOH HOH . E 4 HOH A 82 482 107 HOH HOH . E 4 HOH A 83 483 41 HOH HOH . E 4 HOH A 84 484 92 HOH HOH . E 4 HOH A 85 485 84 HOH HOH . E 4 HOH A 86 486 140 HOH HOH . E 4 HOH A 87 487 43 HOH HOH . E 4 HOH A 88 488 80 HOH HOH . E 4 HOH A 89 489 77 HOH HOH . E 4 HOH A 90 490 143 HOH HOH . E 4 HOH A 91 491 20 HOH HOH . E 4 HOH A 92 492 66 HOH HOH . E 4 HOH A 93 493 139 HOH HOH . E 4 HOH A 94 494 130 HOH HOH . E 4 HOH A 95 495 110 HOH HOH . E 4 HOH A 96 496 147 HOH HOH . E 4 HOH A 97 497 119 HOH HOH . E 4 HOH A 98 498 122 HOH HOH . E 4 HOH A 99 499 14 HOH HOH . E 4 HOH A 100 500 106 HOH HOH . E 4 HOH A 101 501 134 HOH HOH . E 4 HOH A 102 502 50 HOH HOH . E 4 HOH A 103 503 136 HOH HOH . E 4 HOH A 104 504 55 HOH HOH . E 4 HOH A 105 505 153 HOH HOH . E 4 HOH A 106 506 154 HOH HOH . E 4 HOH A 107 507 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 A1H84 . . . D 3 -0.895 4.31 -21.755 1 25.56 ? C27 A1H84 303 A 1 HETATM 2 C C28 A1H84 . . . D 3 -2.324 4.039 -21.352 1 25.18 ? C28 A1H84 303 A 1 HETATM 3 C C29 A1H84 . . . D 3 -3.285 4.413 -22.474 1 24.07 ? C29 A1H84 303 A 1 HETATM 4 C C30 A1H84 . . . D 3 -3.494 5.881 -22.581 1 22.04 ? C30 A1H84 303 A 1 HETATM 5 C C31 A1H84 . . . D 3 -3.977 7.924 -22.123 1 20.53 ? C31 A1H84 303 A 1 HETATM 6 C C26 A1H84 . . . D 3 -0.379 3.787 -22.932 1 25.36 ? C26 A1H84 303 A 1 HETATM 7 C C25 A1H84 . . . D 3 0.931 4.025 -23.309 1 25.96 ? C25 A1H84 303 A 1 HETATM 8 C C24 A1H84 . . . D 3 1.749 4.8 -22.504 1 26.9 ? C24 A1H84 303 A 1 HETATM 9 C C23 A1H84 . . . D 3 3.418 4.579 -24.216 1 32.92 ? C23 A1H84 303 A 1 HETATM 10 N N20 A1H84 . . . D 3 3.705 7.647 -25.705 1 45.37 ? N20 A1H84 303 A 1 HETATM 11 C C22 A1H84 . . . D 3 4.912 4.715 -24.38 1 36.78 ? C22 A1H84 303 A 1 HETATM 12 C C18 A1H84 . . . D 3 1.835 9.209 -25.932 1 48.42 ? C18 A1H84 303 A 1 HETATM 13 C C19 A1H84 . . . D 3 2.997 8.542 -26.608 1 47.07 ? C19 A1H84 303 A 1 HETATM 14 C C20 A1H84 . . . D 3 4.173 6.46 -26.081 1 43.34 ? C20 A1H84 303 A 1 HETATM 15 C C21 A1H84 . . . D 3 5.303 5.909 -25.244 1 40.35 ? C21 A1H84 303 A 1 HETATM 16 C C32 A1H84 . . . D 3 -3.931 7.838 -23.511 1 21.58 ? C32 A1H84 303 A 1 HETATM 17 C C33 A1H84 . . . D 3 -4.234 8.913 -24.329 1 21.56 ? C33 A1H84 303 A 1 HETATM 18 C C34 A1H84 . . . D 3 -4.605 10.099 -23.723 1 19.91 ? C34 A1H84 303 A 1 HETATM 19 C C35 A1H84 . . . D 3 -4.664 10.214 -22.331 1 18.42 ? C35 A1H84 303 A 1 HETATM 20 C C36 A1H84 . . . D 3 -5.139 11.477 -21.721 1 17.05 ? C36 A1H84 303 A 1 HETATM 21 C C37 A1H84 . . . D 3 -4.732 12.733 -22.045 1 18.19 ? C37 A1H84 303 A 1 HETATM 22 C C38 A1H84 . . . D 3 -3.728 13.281 -22.992 1 19.51 ? C38 A1H84 303 A 1 HETATM 23 C C39 A1H84 . . . D 3 -6.147 11.659 -20.747 1 15.99 ? C39 A1H84 303 A 1 HETATM 24 C C40 A1H84 . . . D 3 -6.936 10.62 -20.018 1 16.26 ? C40 A1H84 303 A 1 HETATM 25 C C41 A1H84 . . . D 3 -4.336 9.127 -21.52 1 18.52 ? C41 A1H84 303 A 1 HETATM 26 C C42 A1H84 . . . D 3 -3.269 6.001 -25.122 1 27.81 ? C42 A1H84 303 A 1 HETATM 27 C C43 A1H84 . . . D 3 -1.902 6.493 -25.594 1 31.36 ? C43 A1H84 303 A 1 HETATM 28 C C44 A1H84 . . . D 3 -0.1 6.397 -27.195 1 36.75 ? C44 A1H84 303 A 1 HETATM 29 C C45 A1H84 . . . D 3 0.3 5.936 -28.573 1 37.92 ? C45 A1H84 303 A 1 HETATM 30 C C46 A1H84 . . . D 3 -1.445 7.433 -29.024 1 38.51 ? C46 A1H84 303 A 1 HETATM 31 C C47 A1H84 . . . D 3 -2.33 6.837 -27.957 1 37.04 ? C47 A1H84 303 A 1 HETATM 32 C C48 A1H84 . . . D 3 -0.062 5.086 -20.962 1 26.36 ? C48 A1H84 303 A 1 HETATM 33 C C49 A1H84 . . . D 3 1.25 5.334 -21.327 1 26.81 ? C49 A1H84 303 A 1 HETATM 34 N N31 A1H84 . . . D 3 -3.687 6.685 -21.558 1 21.85 ? N31 A1H84 303 A 1 HETATM 35 N N37 A1H84 . . . D 3 -6.347 12.919 -20.507 1 17.13 ? N37 A1H84 303 A 1 HETATM 36 N N42 A1H84 . . . D 3 -3.592 6.526 -23.788 1 23.83 ? N42 A1H84 303 A 1 HETATM 37 N N43 A1H84 . . . D 3 -1.522 6.116 -26.962 1 35.23 ? N43 A1H84 303 A 1 HETATM 38 O O20 A1H84 . . . D 3 3.731 5.848 -27.049 1 43.79 ? O20 A1H84 303 A 1 HETATM 39 O O18 A1H84 . . . D 3 1.597 10.468 -26.541 1 49.22 ? O18 A1H84 303 A 1 HETATM 40 O O24 A1H84 . . . D 3 3.044 5.02 -22.901 1 29.63 ? O24 A1H84 303 A 1 HETATM 41 O O37 A1H84 . . . D 3 -5.435 13.624 -21.336 1 17.81 ? O37 A1H84 303 A 1 HETATM 42 O O43 A1H84 . . . D 3 -0.564 6.461 -29.581 1 38.58 ? O43 A1H84 303 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #