data_9F1K # _model_server_result.job_id PBMWY-soyjhaaKkXEY507w _model_server_result.datetime_utc '2024-10-18 23:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F1K # _exptl.entry_id 9F1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 645.835 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]-N-(2-methoxyethyl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9F1K _cell.length_a 38.997 _cell.length_b 50.706 _cell.length_c 59.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H51 N7 O4' _chem_comp.formula_weight 645.835 _chem_comp.id A1H81 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]-N-(2-methoxyethyl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C14 A1H81 doub 1 n n C16 O1 A1H81 sing 2 n n C16 C15 A1H81 sing 3 n n C17 O1 A1H81 sing 4 n n C14 C13 A1H81 sing 5 n n C14 N4 A1H81 sing 6 n n C15 N4 A1H81 sing 7 n n C13 N3 A1H81 sing 8 n n N3 C18 A1H81 sing 9 n n N3 C12 A1H81 sing 10 n n C18 C19 A1H81 sing 11 n n C12 C11 A1H81 sing 12 n n C19 N2 A1H81 sing 13 n n C31 N5 A1H81 sing 14 n n C11 N2 A1H81 sing 15 n n N2 C10 A1H81 sing 16 n n C30 N5 A1H81 sing 17 n n N5 C29 A1H81 sing 18 n n C10 C9 A1H81 sing 19 n n C29 C28 A1H81 sing 20 n n C9 N1 A1H81 sing 21 n n C28 C27 A1H81 sing 22 n n C7 C6 A1H81 doub 23 n y C7 C8 A1H81 sing 24 n y N1 C8 A1H81 sing 25 n y N1 C20 A1H81 sing 26 n y C6 C5 A1H81 sing 27 n y C27 O3 A1H81 sing 28 n n C8 C34 A1H81 doub 29 n y C25 C24 A1H81 doub 30 n y C25 C26 A1H81 sing 31 n y C3 C2 A1H81 sing 32 n n C24 C23 A1H81 sing 33 n y C20 C21 A1H81 sing 34 n n C20 N6 A1H81 doub 35 n y C21 C22 A1H81 sing 36 n n O3 C26 A1H81 sing 37 n n C5 C4 A1H81 sing 38 n n C5 C35 A1H81 doub 39 n y C26 C32 A1H81 doub 40 n y C34 N6 A1H81 sing 41 n y C34 C35 A1H81 sing 42 n y C2 C4 A1H81 doub 43 n y C2 O A1H81 sing 44 n y C23 C22 A1H81 sing 45 n n C23 C33 A1H81 doub 46 n y C4 C1 A1H81 sing 47 n y O N A1H81 sing 48 n y C32 C33 A1H81 sing 49 n y C1 N A1H81 doub 50 n y C1 C A1H81 sing 51 n n C12 H1 A1H81 sing 52 n n C12 H2 A1H81 sing 53 n n N4 H3 A1H81 sing 54 n n C3 H4 A1H81 sing 55 n n C3 H5 A1H81 sing 56 n n C3 H6 A1H81 sing 57 n n C10 H7 A1H81 sing 58 n n C10 H8 A1H81 sing 59 n n C13 H9 A1H81 sing 60 n n C13 H10 A1H81 sing 61 n n C16 H11 A1H81 sing 62 n n C16 H12 A1H81 sing 63 n n C17 H13 A1H81 sing 64 n n C17 H14 A1H81 sing 65 n n C17 H15 A1H81 sing 66 n n C6 H17 A1H81 sing 67 n n C11 H18 A1H81 sing 68 n n C11 H19 A1H81 sing 69 n n C28 H20 A1H81 sing 70 n n C28 H21 A1H81 sing 71 n n C29 H22 A1H81 sing 72 n n C29 H23 A1H81 sing 73 n n C30 H24 A1H81 sing 74 n n C30 H25 A1H81 sing 75 n n C30 H26 A1H81 sing 76 n n C31 H27 A1H81 sing 77 n n C31 H28 A1H81 sing 78 n n C31 H29 A1H81 sing 79 n n C32 H30 A1H81 sing 80 n n C H31 A1H81 sing 81 n n C H32 A1H81 sing 82 n n C H33 A1H81 sing 83 n n C15 H34 A1H81 sing 84 n n C15 H35 A1H81 sing 85 n n C18 H36 A1H81 sing 86 n n C18 H37 A1H81 sing 87 n n C19 H38 A1H81 sing 88 n n C19 H39 A1H81 sing 89 n n C21 H40 A1H81 sing 90 n n C21 H41 A1H81 sing 91 n n C22 H42 A1H81 sing 92 n n C22 H43 A1H81 sing 93 n n C24 H44 A1H81 sing 94 n n C25 H45 A1H81 sing 95 n n C27 H46 A1H81 sing 96 n n C27 H47 A1H81 sing 97 n n C33 H48 A1H81 sing 98 n n C35 H49 A1H81 sing 99 n n C7 H50 A1H81 sing 100 n n C9 H51 A1H81 sing 101 n n C9 H52 A1H81 sing 102 n n # _atom_sites.entry_id 9F1K _atom_sites.fract_transf_matrix[1][1] 0.025643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H81 A 1 201 201 A1H81 084 . C 3 EDO A 1 202 301 EDO EDO . D 4 HOH A 1 301 80 HOH HOH . D 4 HOH A 2 302 82 HOH HOH . D 4 HOH A 3 303 50 HOH HOH . D 4 HOH A 4 304 81 HOH HOH . D 4 HOH A 5 305 4 HOH HOH . D 4 HOH A 6 306 89 HOH HOH . D 4 HOH A 7 307 41 HOH HOH . D 4 HOH A 8 308 59 HOH HOH . D 4 HOH A 9 309 70 HOH HOH . D 4 HOH A 10 310 28 HOH HOH . D 4 HOH A 11 311 86 HOH HOH . D 4 HOH A 12 312 71 HOH HOH . D 4 HOH A 13 313 39 HOH HOH . D 4 HOH A 14 314 42 HOH HOH . D 4 HOH A 15 315 11 HOH HOH . D 4 HOH A 16 316 8 HOH HOH . D 4 HOH A 17 317 68 HOH HOH . D 4 HOH A 18 318 26 HOH HOH . D 4 HOH A 19 319 9 HOH HOH . D 4 HOH A 20 320 61 HOH HOH . D 4 HOH A 21 321 10 HOH HOH . D 4 HOH A 22 322 15 HOH HOH . D 4 HOH A 23 323 67 HOH HOH . D 4 HOH A 24 324 43 HOH HOH . D 4 HOH A 25 325 33 HOH HOH . D 4 HOH A 26 326 13 HOH HOH . D 4 HOH A 27 327 12 HOH HOH . D 4 HOH A 28 328 3 HOH HOH . D 4 HOH A 29 329 24 HOH HOH . D 4 HOH A 30 330 5 HOH HOH . D 4 HOH A 31 331 87 HOH HOH . D 4 HOH A 32 332 52 HOH HOH . D 4 HOH A 33 333 18 HOH HOH . D 4 HOH A 34 334 35 HOH HOH . D 4 HOH A 35 335 58 HOH HOH . D 4 HOH A 36 336 1 HOH HOH . D 4 HOH A 37 337 46 HOH HOH . D 4 HOH A 38 338 69 HOH HOH . D 4 HOH A 39 339 63 HOH HOH . D 4 HOH A 40 340 31 HOH HOH . D 4 HOH A 41 341 17 HOH HOH . D 4 HOH A 42 342 84 HOH HOH . D 4 HOH A 43 343 90 HOH HOH . D 4 HOH A 44 344 79 HOH HOH . D 4 HOH A 45 345 62 HOH HOH . D 4 HOH A 46 346 6 HOH HOH . D 4 HOH A 47 347 44 HOH HOH . D 4 HOH A 48 348 38 HOH HOH . D 4 HOH A 49 349 51 HOH HOH . D 4 HOH A 50 350 25 HOH HOH . D 4 HOH A 51 351 19 HOH HOH . D 4 HOH A 52 352 53 HOH HOH . D 4 HOH A 53 353 83 HOH HOH . D 4 HOH A 54 354 2 HOH HOH . D 4 HOH A 55 355 66 HOH HOH . D 4 HOH A 56 356 73 HOH HOH . D 4 HOH A 57 357 74 HOH HOH . D 4 HOH A 58 358 93 HOH HOH . D 4 HOH A 59 359 77 HOH HOH . D 4 HOH A 60 360 27 HOH HOH . D 4 HOH A 61 361 78 HOH HOH . D 4 HOH A 62 362 85 HOH HOH . D 4 HOH A 63 363 92 HOH HOH . D 4 HOH A 64 364 75 HOH HOH . D 4 HOH A 65 365 20 HOH HOH . D 4 HOH A 66 366 76 HOH HOH . D 4 HOH A 67 367 56 HOH HOH . D 4 HOH A 68 368 16 HOH HOH . D 4 HOH A 69 369 60 HOH HOH . D 4 HOH A 70 370 91 HOH HOH . D 4 HOH A 71 371 36 HOH HOH . D 4 HOH A 72 372 88 HOH HOH . D 4 HOH A 73 373 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 A1H81 . . . B 2 -7.339 5.143 -28.34 1 57.36 ? C12 A1H81 201 A 1 HETATM 2 C C1 A1H81 . . . B 2 -6.026 11.54 -20.782 1 28.83 ? C1 A1H81 201 A 1 HETATM 3 C C5 A1H81 . . . B 2 -4.518 10.155 -22.416 1 32.26 ? C5 A1H81 201 A 1 HETATM 4 N N4 A1H81 . . . B 2 -9.9 5.768 -30.088 1 64.22 ? N4 A1H81 201 A 1 HETATM 5 C C3 A1H81 . . . B 2 -3.549 13.239 -22.91 1 30.99 ? C3 A1H81 201 A 1 HETATM 6 C C10 A1H81 . . . B 2 -4.591 5.074 -25.775 1 47.29 ? C10 A1H81 201 A 1 HETATM 7 C C13 A1H81 . . . B 2 -7.579 6.348 -30.422 1 61.15 ? C13 A1H81 201 A 1 HETATM 8 C C14 A1H81 . . . B 2 -8.771 5.452 -30.721 1 63.05 ? C14 A1H81 201 A 1 HETATM 9 C C16 A1H81 . . . B 2 -11.878 6.191 -31.491 1 64.82 ? C16 A1H81 201 A 1 HETATM 10 C C17 A1H81 . . . B 2 -13.169 8.131 -31.118 1 64.17 ? C17 A1H81 201 A 1 HETATM 11 N N2 A1H81 . . . B 2 -5.513 5.631 -26.777 1 52.97 ? N2 A1H81 201 A 1 HETATM 12 C C6 A1H81 . . . B 2 -4.508 10.075 -23.812 1 34.08 ? C6 A1H81 201 A 1 HETATM 13 C C11 A1H81 . . . B 2 -6.349 4.569 -27.346 1 54.98 ? C11 A1H81 201 A 1 HETATM 14 C C28 A1H81 . . . B 2 4.011 5.065 -24.808 1 52.72 ? C28 A1H81 201 A 1 HETATM 15 C C29 A1H81 . . . B 2 2.735 5.464 -25.534 1 56.77 ? C29 A1H81 201 A 1 HETATM 16 C C30 A1H81 . . . B 2 1.551 7.191 -26.727 1 59.92 ? C30 A1H81 201 A 1 HETATM 17 C C31 A1H81 . . . B 2 3.655 6.405 -27.553 1 60.41 ? C31 A1H81 201 A 1 HETATM 18 C C32 A1H81 . . . B 2 1.26 5.224 -21.26 1 35.16 ? C32 A1H81 201 A 1 HETATM 19 N N A1H81 . . . B 2 -6.228 12.794 -20.495 1 28.4 ? N A1H81 201 A 1 HETATM 20 C C A1H81 . . . B 2 -6.832 10.487 -20.096 1 27.21 ? C A1H81 201 A 1 HETATM 21 O O A1H81 . . . B 2 -5.314 13.529 -21.293 1 30.03 ? O A1H81 201 A 1 HETATM 22 C C15 A1H81 . . . B 2 -11.207 5.276 -30.501 1 64.23 ? C15 A1H81 201 A 1 HETATM 23 C C18 A1H81 . . . B 2 -5.795 6.879 -28.877 1 56.78 ? C18 A1H81 201 A 1 HETATM 24 C C19 A1H81 . . . B 2 -4.804 6.309 -27.868 1 54.76 ? C19 A1H81 201 A 1 HETATM 25 C C2 A1H81 . . . B 2 -4.593 12.659 -22.029 1 30.24 ? C2 A1H81 201 A 1 HETATM 26 C C20 A1H81 . . . B 2 -3.386 5.824 -22.809 1 33.26 ? C20 A1H81 201 A 1 HETATM 27 C C21 A1H81 . . . B 2 -3.159 4.353 -22.726 1 33.44 ? C21 A1H81 201 A 1 HETATM 28 C C22 A1H81 . . . B 2 -2.316 3.953 -21.516 1 32.99 ? C22 A1H81 201 A 1 HETATM 29 C C23 A1H81 . . . B 2 -0.847 4.169 -21.792 1 34.14 ? C23 A1H81 201 A 1 HETATM 30 C C24 A1H81 . . . B 2 -0.226 3.525 -22.852 1 35.86 ? C24 A1H81 201 A 1 HETATM 31 C C25 A1H81 . . . B 2 1.118 3.717 -23.12 1 36.19 ? C25 A1H81 201 A 1 HETATM 32 C C26 A1H81 . . . B 2 1.865 4.568 -22.321 1 36.65 ? C26 A1H81 201 A 1 HETATM 33 C C27 A1H81 . . . B 2 3.764 4.055 -23.712 1 46.45 ? C27 A1H81 201 A 1 HETATM 34 C C33 A1H81 . . . B 2 -0.086 5.019 -21.003 1 36.7 ? C33 A1H81 201 A 1 HETATM 35 C C34 A1H81 . . . B 2 -3.82 7.862 -22.29 1 31.58 ? C34 A1H81 201 A 1 HETATM 36 C C35 A1H81 . . . B 2 -4.15 9.053 -21.646 1 31.8 ? C35 A1H81 201 A 1 HETATM 37 C C4 A1H81 . . . B 2 -5.001 11.391 -21.755 1 28.93 ? C4 A1H81 201 A 1 HETATM 38 C C7 A1H81 . . . B 2 -4.169 8.9 -24.46 1 35.08 ? C7 A1H81 201 A 1 HETATM 39 C C8 A1H81 . . . B 2 -3.843 7.804 -23.679 1 34.08 ? C8 A1H81 201 A 1 HETATM 40 C C9 A1H81 . . . B 2 -3.407 5.955 -25.366 1 41.18 ? C9 A1H81 201 A 1 HETATM 41 N N1 A1H81 . . . B 2 -3.552 6.486 -23.998 1 35.73 ? N1 A1H81 201 A 1 HETATM 42 N N3 A1H81 . . . B 2 -6.637 5.814 -29.437 1 58.58 ? N3 A1H81 201 A 1 HETATM 43 N N5 A1H81 . . . B 2 2.866 6.671 -26.354 1 59.68 ? N5 A1H81 201 A 1 HETATM 44 N N6 A1H81 . . . B 2 -3.519 6.61 -21.762 1 31.43 ? N6 A1H81 201 A 1 HETATM 45 O O1 A1H81 . . . B 2 -11.909 7.499 -30.951 1 64.79 ? O1 A1H81 201 A 1 HETATM 46 O O2 A1H81 . . . B 2 -8.685 4.518 -31.513 1 63.23 ? O2 A1H81 201 A 1 HETATM 47 O O3 A1H81 . . . B 2 3.201 4.743 -22.584 1 40.72 ? O3 A1H81 201 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #