data_9F1X
#
_model_server_result.job_id            ZvgQ6lsSINMCEsIXyRgeEg 
_model_server_result.datetime_utc      '2025-07-15 14:11:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9f1x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    9F1X 
#
_exptl.entry_id    9F1X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9F1X 
_cell.length_a            101.51 
_cell.length_b            53.93 
_cell.length_c            72.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9F1X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 117 A ASP 89 1_555 C CA CA . A CA 402 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc2 A OD2 ASP 184 A ASP 156 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc3 A OD2 ASP 228 A ASP 200 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc4 A OD1 ASP 298 A ASP 270 1_555 D CA CA . A CA 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc5 A OD1 ASP 338 A ASP 310 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc6 A OD2 ASP 338 A ASP 310 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc7 A OD1 ASP 349 A ASP 321 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc8 C CA CA . A CA 402 1_555 E O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc9 C CA CA . A CA 402 1_555 E O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc10 C CA CA . A CA 402 1_555 E O HOH . A HOH 586 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc11 D CA CA . A CA 403 1_555 E O HOH . A HOH 502 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc12 D CA CA . A CA 403 1_555 E O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc13 D CA CA . A CA 403 1_555 E O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     9F1X 
_atom_sites.fract_transf_matrix[1][1]    0.009851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 401 401 FMN FMN . 
C 3 CA A 1 402 2 CA CA . 
D 3 CA A 1 403 3 CA CA . 
E 4 HOH A 1 501 68 HOH HOH . 
E 4 HOH A 2 502 90 HOH HOH . 
E 4 HOH A 3 503 82 HOH HOH . 
E 4 HOH A 4 504 85 HOH HOH . 
E 4 HOH A 5 505 25 HOH HOH . 
E 4 HOH A 6 506 21 HOH HOH . 
E 4 HOH A 7 507 43 HOH HOH . 
E 4 HOH A 8 508 71 HOH HOH . 
E 4 HOH A 9 509 64 HOH HOH . 
E 4 HOH A 10 510 44 HOH HOH . 
E 4 HOH A 11 511 45 HOH HOH . 
E 4 HOH A 12 512 59 HOH HOH . 
E 4 HOH A 13 513 50 HOH HOH . 
E 4 HOH A 14 514 61 HOH HOH . 
E 4 HOH A 15 515 3 HOH HOH . 
E 4 HOH A 16 516 77 HOH HOH . 
E 4 HOH A 17 517 8 HOH HOH . 
E 4 HOH A 18 518 53 HOH HOH . 
E 4 HOH A 19 519 13 HOH HOH . 
E 4 HOH A 20 520 19 HOH HOH . 
E 4 HOH A 21 521 4 HOH HOH . 
E 4 HOH A 22 522 69 HOH HOH . 
E 4 HOH A 23 523 10 HOH HOH . 
E 4 HOH A 24 524 27 HOH HOH . 
E 4 HOH A 25 525 26 HOH HOH . 
E 4 HOH A 26 526 38 HOH HOH . 
E 4 HOH A 27 527 5 HOH HOH . 
E 4 HOH A 28 528 11 HOH HOH . 
E 4 HOH A 29 529 54 HOH HOH . 
E 4 HOH A 30 530 34 HOH HOH . 
E 4 HOH A 31 531 7 HOH HOH . 
E 4 HOH A 32 532 32 HOH HOH . 
E 4 HOH A 33 533 42 HOH HOH . 
E 4 HOH A 34 534 6 HOH HOH . 
E 4 HOH A 35 535 74 HOH HOH . 
E 4 HOH A 36 536 24 HOH HOH . 
E 4 HOH A 37 537 75 HOH HOH . 
E 4 HOH A 38 538 18 HOH HOH . 
E 4 HOH A 39 539 16 HOH HOH . 
E 4 HOH A 40 540 37 HOH HOH . 
E 4 HOH A 41 541 30 HOH HOH . 
E 4 HOH A 42 542 84 HOH HOH . 
E 4 HOH A 43 543 88 HOH HOH . 
E 4 HOH A 44 544 41 HOH HOH . 
E 4 HOH A 45 545 55 HOH HOH . 
E 4 HOH A 46 546 12 HOH HOH . 
E 4 HOH A 47 547 15 HOH HOH . 
E 4 HOH A 48 548 36 HOH HOH . 
E 4 HOH A 49 549 49 HOH HOH . 
E 4 HOH A 50 550 31 HOH HOH . 
E 4 HOH A 51 551 33 HOH HOH . 
E 4 HOH A 52 552 76 HOH HOH . 
E 4 HOH A 53 553 35 HOH HOH . 
E 4 HOH A 54 554 67 HOH HOH . 
E 4 HOH A 55 555 23 HOH HOH . 
E 4 HOH A 56 556 51 HOH HOH . 
E 4 HOH A 57 557 9 HOH HOH . 
E 4 HOH A 58 558 63 HOH HOH . 
E 4 HOH A 59 559 58 HOH HOH . 
E 4 HOH A 60 560 73 HOH HOH . 
E 4 HOH A 61 561 39 HOH HOH . 
E 4 HOH A 62 562 20 HOH HOH . 
E 4 HOH A 63 563 48 HOH HOH . 
E 4 HOH A 64 564 78 HOH HOH . 
E 4 HOH A 65 565 83 HOH HOH . 
E 4 HOH A 66 566 17 HOH HOH . 
E 4 HOH A 67 567 28 HOH HOH . 
E 4 HOH A 68 568 46 HOH HOH . 
E 4 HOH A 69 569 72 HOH HOH . 
E 4 HOH A 70 570 1 HOH HOH . 
E 4 HOH A 71 571 14 HOH HOH . 
E 4 HOH A 72 572 91 HOH HOH . 
E 4 HOH A 73 573 22 HOH HOH . 
E 4 HOH A 74 574 60 HOH HOH . 
E 4 HOH A 75 575 40 HOH HOH . 
E 4 HOH A 76 576 29 HOH HOH . 
E 4 HOH A 77 577 62 HOH HOH . 
E 4 HOH A 78 578 70 HOH HOH . 
E 4 HOH A 79 579 89 HOH HOH . 
E 4 HOH A 80 580 57 HOH HOH . 
E 4 HOH A 81 581 81 HOH HOH . 
E 4 HOH A 82 582 2 HOH HOH . 
E 4 HOH A 83 583 56 HOH HOH . 
E 4 HOH A 84 584 92 HOH HOH . 
E 4 HOH A 85 585 52 HOH HOH . 
E 4 HOH A 86 586 79 HOH HOH . 
E 4 HOH A 87 587 87 HOH HOH . 
E 4 HOH A 88 588 80 HOH HOH . 
E 4 HOH A 89 589 65 HOH HOH . 
E 4 HOH A 90 590 66 HOH HOH . 
E 4 HOH A 91 591 47 HOH HOH . 
E 4 HOH A 92 592 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . B 2 21.152 9.068 47.181 1 46.46 ? N1 FMN 401 A 1 
HETATM 2 C C2 FMN . . . B 2 20.743 10.314 47.631 1 45.4 ? C2 FMN 401 A 1 
HETATM 3 O O2 FMN . . . B 2 21.563 11.197 47.846 1 46.85 ? O2 FMN 401 A 1 
HETATM 4 N N3 FMN . . . B 2 19.407 10.591 47.846 1 37.9 ? N3 FMN 401 A 1 
HETATM 5 C C4 FMN . . . B 2 18.455 9.609 47.605 1 40.85 ? C4 FMN 401 A 1 
HETATM 6 O O4 FMN . . . B 2 17.262 9.862 47.82 1 39.91 ? O4 FMN 401 A 1 
HETATM 7 C C4A FMN . . . B 2 18.863 8.357 47.147 1 38.55 ? C4A FMN 401 A 1 
HETATM 8 N N5 FMN . . . B 2 17.935 7.379 46.898 1 35.38 ? N5 FMN 401 A 1 
HETATM 9 C C5A FMN . . . B 2 18.336 6.133 46.435 1 38.22 ? C5A FMN 401 A 1 
HETATM 10 C C6 FMN . . . B 2 17.393 5.155 46.18 1 36.94 ? C6 FMN 401 A 1 
HETATM 11 C C7 FMN . . . B 2 17.772 3.898 45.724 1 40.59 ? C7 FMN 401 A 1 
HETATM 12 C C7M FMN . . . B 2 16.699 2.879 45.471 1 36.44 ? C7M FMN 401 A 1 
HETATM 13 C C8 FMN . . . B 2 19.114 3.612 45.507 1 44.98 ? C8 FMN 401 A 1 
HETATM 14 C C8M FMN . . . B 2 19.537 2.256 45.017 1 44.96 ? C8M FMN 401 A 1 
HETATM 15 C C9 FMN . . . B 2 20.069 4.593 45.761 1 43.02 ? C9 FMN 401 A 1 
HETATM 16 C C9A FMN . . . B 2 19.677 5.85 46.219 1 42.51 ? C9A FMN 401 A 1 
HETATM 17 N N10 FMN . . . B 2 20.615 6.83 46.47 1 42.85 ? N10 FMN 401 A 1 
HETATM 18 C C10 FMN . . . B 2 20.221 8.078 46.932 1 39.75 ? C10 FMN 401 A 1 
HETATM 19 C C1' FMN . . . B 2 22.062 6.479 46.261 1 45.68 ? C1' FMN 401 A 1 
HETATM 20 C C2' FMN . . . B 2 22.69 7.091 45.036 1 47.78 ? C2' FMN 401 A 1 
HETATM 21 O O2' FMN . . . B 2 22.381 6.257 43.94 1 47.78 ? O2' FMN 401 A 1 
HETATM 22 C C3' FMN . . . B 2 24.194 7.157 45.308 1 60.17 ? C3' FMN 401 A 1 
HETATM 23 O O3' FMN . . . B 2 24.708 5.862 45.525 1 53.97 ? O3' FMN 401 A 1 
HETATM 24 C C4' FMN . . . B 2 24.503 7.984 46.553 1 62.4 ? C4' FMN 401 A 1 
HETATM 25 O O4' FMN . . . B 2 23.837 9.236 46.518 1 62.82 ? O4' FMN 401 A 1 
HETATM 26 C C5' FMN . . . B 2 25.998 8.241 46.625 1 76.06 ? C5' FMN 401 A 1 
HETATM 27 O O5' FMN . . . B 2 26.264 9.344 45.784 1 101.03 ? O5' FMN 401 A 1 
HETATM 28 P P FMN . . . B 2 27.761 9.917 45.583 1 132.88 ? P FMN 401 A 1 
HETATM 29 O O1P FMN . . . B 2 28.295 9.375 44.273 1 113.64 ? O1P FMN 401 A 1 
HETATM 30 O O2P FMN . . . B 2 27.745 11.434 45.543 1 103.77 ? O2P FMN 401 A 1 
HETATM 31 O O3P FMN . . . B 2 28.628 9.444 46.733 1 115.82 ? O3P FMN 401 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           638 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#