data_9F1Z # _model_server_result.job_id T35KfQREg8JTBHuP2YBxow _model_server_result.datetime_utc '2025-07-16 06:07:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 9F1Z # _exptl.entry_id 9F1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9F1Z _cell.length_a 100.455 _cell.length_b 52.684 _cell.length_c 71.525 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 90 A ASP 89 1_555 D CA CA . A CA 403 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc2 A OD2 ASP 157 A ASP 156 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A O ILE 158 A ILE 157 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc4 A OD2 ASP 201 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc5 A OD1 ASP 271 A ASP 270 1_555 E CA CA . A CA 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc6 A OD1 ASP 311 A ASP 310 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc7 A OD2 ASP 311 A ASP 310 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc8 A OD1 ASP 322 A ASP 321 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 D CA CA . A CA 403 1_555 F O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc10 D CA CA . A CA 403 1_555 F O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 D CA CA . A CA 403 1_555 F O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc12 E CA CA . A CA 404 1_555 F O HOH . A HOH 502 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc13 E CA CA . A CA 404 1_555 F O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc14 E CA CA . A CA 404 1_555 F O HOH . A HOH 550 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc15 E CA CA . A CA 404 1_555 F O HOH . A HOH 576 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9F1Z _atom_sites.fract_transf_matrix[1][1] 0.009955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 401 FMN FMN . C 3 GOL A 1 402 402 GOL GOL . D 4 CA A 1 403 1 CA CA . E 4 CA A 1 404 2 CA CA . F 5 HOH A 1 501 157 HOH HOH . F 5 HOH A 2 502 248 HOH HOH . F 5 HOH A 3 503 116 HOH HOH . F 5 HOH A 4 504 142 HOH HOH . F 5 HOH A 5 505 225 HOH HOH . F 5 HOH A 6 506 128 HOH HOH . F 5 HOH A 7 507 145 HOH HOH . F 5 HOH A 8 508 41 HOH HOH . F 5 HOH A 9 509 29 HOH HOH . F 5 HOH A 10 510 147 HOH HOH . F 5 HOH A 11 511 112 HOH HOH . F 5 HOH A 12 512 215 HOH HOH . F 5 HOH A 13 513 204 HOH HOH . F 5 HOH A 14 514 27 HOH HOH . F 5 HOH A 15 515 146 HOH HOH . F 5 HOH A 16 516 173 HOH HOH . F 5 HOH A 17 517 196 HOH HOH . F 5 HOH A 18 518 159 HOH HOH . F 5 HOH A 19 519 102 HOH HOH . F 5 HOH A 20 520 123 HOH HOH . F 5 HOH A 21 521 107 HOH HOH . F 5 HOH A 22 522 224 HOH HOH . F 5 HOH A 23 523 6 HOH HOH . F 5 HOH A 24 524 42 HOH HOH . F 5 HOH A 25 525 221 HOH HOH . F 5 HOH A 26 526 109 HOH HOH . F 5 HOH A 27 527 217 HOH HOH . F 5 HOH A 28 528 60 HOH HOH . F 5 HOH A 29 529 127 HOH HOH . F 5 HOH A 30 530 140 HOH HOH . F 5 HOH A 31 531 216 HOH HOH . F 5 HOH A 32 532 154 HOH HOH . F 5 HOH A 33 533 207 HOH HOH . F 5 HOH A 34 534 4 HOH HOH . F 5 HOH A 35 535 172 HOH HOH . F 5 HOH A 36 536 194 HOH HOH . F 5 HOH A 37 537 190 HOH HOH . F 5 HOH A 38 538 247 HOH HOH . F 5 HOH A 39 539 180 HOH HOH . F 5 HOH A 40 540 114 HOH HOH . F 5 HOH A 41 541 183 HOH HOH . F 5 HOH A 42 542 5 HOH HOH . F 5 HOH A 43 543 125 HOH HOH . F 5 HOH A 44 544 8 HOH HOH . F 5 HOH A 45 545 124 HOH HOH . F 5 HOH A 46 546 155 HOH HOH . F 5 HOH A 47 547 40 HOH HOH . F 5 HOH A 48 548 208 HOH HOH . F 5 HOH A 49 549 93 HOH HOH . F 5 HOH A 50 550 26 HOH HOH . F 5 HOH A 51 551 87 HOH HOH . F 5 HOH A 52 552 234 HOH HOH . F 5 HOH A 53 553 56 HOH HOH . F 5 HOH A 54 554 25 HOH HOH . F 5 HOH A 55 555 95 HOH HOH . F 5 HOH A 56 556 2 HOH HOH . F 5 HOH A 57 557 120 HOH HOH . F 5 HOH A 58 558 209 HOH HOH . F 5 HOH A 59 559 211 HOH HOH . F 5 HOH A 60 560 191 HOH HOH . F 5 HOH A 61 561 3 HOH HOH . F 5 HOH A 62 562 20 HOH HOH . F 5 HOH A 63 563 251 HOH HOH . F 5 HOH A 64 564 94 HOH HOH . F 5 HOH A 65 565 11 HOH HOH . F 5 HOH A 66 566 181 HOH HOH . F 5 HOH A 67 567 78 HOH HOH . F 5 HOH A 68 568 49 HOH HOH . F 5 HOH A 69 569 104 HOH HOH . F 5 HOH A 70 570 164 HOH HOH . F 5 HOH A 71 571 58 HOH HOH . F 5 HOH A 72 572 168 HOH HOH . F 5 HOH A 73 573 98 HOH HOH . F 5 HOH A 74 574 249 HOH HOH . F 5 HOH A 75 575 210 HOH HOH . F 5 HOH A 76 576 38 HOH HOH . F 5 HOH A 77 577 182 HOH HOH . F 5 HOH A 78 578 233 HOH HOH . F 5 HOH A 79 579 77 HOH HOH . F 5 HOH A 80 580 156 HOH HOH . F 5 HOH A 81 581 126 HOH HOH . F 5 HOH A 82 582 206 HOH HOH . F 5 HOH A 83 583 171 HOH HOH . F 5 HOH A 84 584 85 HOH HOH . F 5 HOH A 85 585 69 HOH HOH . F 5 HOH A 86 586 200 HOH HOH . F 5 HOH A 87 587 166 HOH HOH . F 5 HOH A 88 588 195 HOH HOH . F 5 HOH A 89 589 96 HOH HOH . F 5 HOH A 90 590 110 HOH HOH . F 5 HOH A 91 591 243 HOH HOH . F 5 HOH A 92 592 178 HOH HOH . F 5 HOH A 93 593 141 HOH HOH . F 5 HOH A 94 594 118 HOH HOH . F 5 HOH A 95 595 185 HOH HOH . F 5 HOH A 96 596 151 HOH HOH . F 5 HOH A 97 597 184 HOH HOH . F 5 HOH A 98 598 7 HOH HOH . F 5 HOH A 99 599 214 HOH HOH . F 5 HOH A 100 600 223 HOH HOH . F 5 HOH A 101 601 32 HOH HOH . F 5 HOH A 102 602 21 HOH HOH . F 5 HOH A 103 603 1 HOH HOH . F 5 HOH A 104 604 16 HOH HOH . F 5 HOH A 105 605 97 HOH HOH . F 5 HOH A 106 606 28 HOH HOH . F 5 HOH A 107 607 66 HOH HOH . F 5 HOH A 108 608 227 HOH HOH . F 5 HOH A 109 609 113 HOH HOH . F 5 HOH A 110 610 59 HOH HOH . F 5 HOH A 111 611 119 HOH HOH . F 5 HOH A 112 612 61 HOH HOH . F 5 HOH A 113 613 106 HOH HOH . F 5 HOH A 114 614 162 HOH HOH . F 5 HOH A 115 615 158 HOH HOH . F 5 HOH A 116 616 51 HOH HOH . F 5 HOH A 117 617 101 HOH HOH . F 5 HOH A 118 618 22 HOH HOH . F 5 HOH A 119 619 131 HOH HOH . F 5 HOH A 120 620 117 HOH HOH . F 5 HOH A 121 621 235 HOH HOH . F 5 HOH A 122 622 163 HOH HOH . F 5 HOH A 123 623 19 HOH HOH . F 5 HOH A 124 624 175 HOH HOH . F 5 HOH A 125 625 148 HOH HOH . F 5 HOH A 126 626 152 HOH HOH . F 5 HOH A 127 627 149 HOH HOH . F 5 HOH A 128 628 192 HOH HOH . F 5 HOH A 129 629 35 HOH HOH . F 5 HOH A 130 630 150 HOH HOH . F 5 HOH A 131 631 9 HOH HOH . F 5 HOH A 132 632 121 HOH HOH . F 5 HOH A 133 633 198 HOH HOH . F 5 HOH A 134 634 136 HOH HOH . F 5 HOH A 135 635 10 HOH HOH . F 5 HOH A 136 636 132 HOH HOH . F 5 HOH A 137 637 135 HOH HOH . F 5 HOH A 138 638 45 HOH HOH . F 5 HOH A 139 639 100 HOH HOH . F 5 HOH A 140 640 232 HOH HOH . F 5 HOH A 141 641 177 HOH HOH . F 5 HOH A 142 642 73 HOH HOH . F 5 HOH A 143 643 220 HOH HOH . F 5 HOH A 144 644 212 HOH HOH . F 5 HOH A 145 645 89 HOH HOH . F 5 HOH A 146 646 165 HOH HOH . F 5 HOH A 147 647 213 HOH HOH . F 5 HOH A 148 648 99 HOH HOH . F 5 HOH A 149 649 188 HOH HOH . F 5 HOH A 150 650 245 HOH HOH . F 5 HOH A 151 651 47 HOH HOH . F 5 HOH A 152 652 167 HOH HOH . F 5 HOH A 153 653 189 HOH HOH . F 5 HOH A 154 654 18 HOH HOH . F 5 HOH A 155 655 105 HOH HOH . F 5 HOH A 156 656 231 HOH HOH . F 5 HOH A 157 657 92 HOH HOH . F 5 HOH A 158 658 88 HOH HOH . F 5 HOH A 159 659 57 HOH HOH . F 5 HOH A 160 660 80 HOH HOH . F 5 HOH A 161 661 250 HOH HOH . F 5 HOH A 162 662 170 HOH HOH . F 5 HOH A 163 663 160 HOH HOH . F 5 HOH A 164 664 134 HOH HOH . F 5 HOH A 165 665 201 HOH HOH . F 5 HOH A 166 666 186 HOH HOH . F 5 HOH A 167 667 187 HOH HOH . F 5 HOH A 168 668 197 HOH HOH . F 5 HOH A 169 669 33 HOH HOH . F 5 HOH A 170 670 179 HOH HOH . F 5 HOH A 171 671 228 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.986 _atom_site.Cartn_y 13.47 _atom_site.Cartn_z -11.294 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 1 #