data_9F2D # _model_server_result.job_id wjoXmEIK_BAyQE18pGwyZQ _model_server_result.datetime_utc '2025-07-04 16:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":301}' # _entry.id 9F2D # _exptl.entry_id 9F2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9F2D _cell.length_a 93.399 _cell.length_b 99.047 _cell.length_c 321.13 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 ? dimeric 2 author_defined_assembly 5 ? dimeric 2 author_defined_assembly 6 ? dimeric 2 author_defined_assembly 7 ? dimeric 2 author_defined_assembly 8 PISA dimeric 2 software_defined_assembly 9 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,Q,V,W 1 1 C,D,R,X 2 1 E,F,S,Y,Z 3 1 G,H,AA,BA 4 1 I,J,T,CA,DA 5 1 K,L,EA,FA 6 1 M,N,GA,HA 7 1 O,P,U,IA,JA 8 1 G,H,AA,BA 9 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 JA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n Q NAG 1 Q 1 NAG B 322 NAG 3 n Q FUC 2 Q 2 FUC B 323 FUC 3 n R NAG 1 R 1 NAG D 301 NAG 3 n R FUC 2 R 2 FUC D 302 FUC 3 n S NAG 1 S 1 NAG F 301 NAG 3 n S FUC 2 S 2 FUC F 302 FUC 3 n T NAG 1 T 1 NAG J 301 NAG 3 n T FUC 2 T 2 FUC J 302 FUC 3 n U NAG 1 U 1 NAG P 301 NAG 3 n U FUC 2 U 2 FUC P 302 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 223 1_555 A SG CYS 88 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 23 B CYS 49 1_555 B SG CYS 74 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 123 B CYS 149 1_555 B SG CYS 172 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 C SG CYS 76 C CYS 223 1_555 C SG CYS 88 C CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 D SG CYS 23 D CYS 49 1_555 D SG CYS 74 D CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 D SG CYS 123 D CYS 149 1_555 D SG CYS 172 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 E SG CYS 76 E CYS 223 1_555 E SG CYS 88 E CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 F SG CYS 23 F CYS 49 1_555 F SG CYS 74 F CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 F SG CYS 123 F CYS 149 1_555 F SG CYS 172 F CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 G SG CYS 76 G CYS 223 1_555 G SG CYS 88 G CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 H SG CYS 23 H CYS 49 1_555 H SG CYS 74 H CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 H SG CYS 123 H CYS 149 1_555 H SG CYS 172 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 I SG CYS 76 I CYS 223 1_555 I SG CYS 88 I CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf14 J SG CYS 23 J CYS 49 1_555 J SG CYS 74 J CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 J SG CYS 123 J CYS 149 1_555 J SG CYS 172 J CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf16 K SG CYS 76 K CYS 223 1_555 K SG CYS 88 K CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf17 L SG CYS 23 L CYS 49 1_555 L SG CYS 74 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf18 L SG CYS 123 L CYS 149 1_555 L SG CYS 172 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 M SG CYS 76 M CYS 223 1_555 M SG CYS 88 M CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 N SG CYS 23 N CYS 49 1_555 N SG CYS 74 N CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 N SG CYS 123 N CYS 149 1_555 N SG CYS 172 N CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 O SG CYS 76 O CYS 223 1_555 O SG CYS 88 O CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf23 P SG CYS 23 P CYS 49 1_555 P SG CYS 74 P CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf24 P SG CYS 123 P CYS 149 1_555 P SG CYS 172 P CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 59 A ASN 206 1_555 V C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B ND2 ASN 118 B ASN 144 1_555 W C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 D ND2 ASN 41 D ASN 67 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 D ND2 ASN 118 D ASN 144 1_555 X C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale5 E ND2 ASN 59 E ASN 206 1_555 Y C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 F ND2 ASN 41 F ASN 67 1_555 S C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale7 F ND2 ASN 118 F ASN 144 1_555 Z C1 NAG . F NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 H ND2 ASN 41 H ASN 67 1_555 AA C1 NAG . H NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale9 H ND2 ASN 118 H ASN 144 1_555 BA C1 NAG . H NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale10 I ND2 ASN 59 I ASN 206 1_555 CA C1 NAG . I NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 J ND2 ASN 41 J ASN 67 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale12 J ND2 ASN 118 J ASN 144 1_555 DA C1 NAG . J NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale13 L ND2 ASN 41 L ASN 67 1_555 EA C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale14 L ND2 ASN 118 L ASN 144 1_555 FA C1 NAG . L NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale15 N ND2 ASN 41 N ASN 67 1_555 GA C1 NAG . N NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale16 N ND2 ASN 118 N ASN 144 1_555 HA C1 NAG . N NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale17 O ND2 ASN 59 O ASN 206 1_555 IA C1 NAG . O NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale18 P ND2 ASN 41 P ASN 67 1_555 U C1 NAG . U NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale19 P ND2 ASN 118 P ASN 144 1_555 JA C1 NAG . P NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale20 Q O6 NAG . Q NAG 1 1_555 Q C1 FUC . Q FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale21 R O6 NAG . R NAG 1 1_555 R C1 FUC . R FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 S O6 NAG . S NAG 1 1_555 S C1 FUC . S FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale23 T O6 NAG . T NAG 1 1_555 T C1 FUC . T FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale24 U O6 NAG . U NAG 1 1_555 U C1 FUC . U FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 258 n n C1 O1 NAG sing 259 n n C1 O5 NAG sing 260 n n C1 H1 NAG sing 261 n n C2 C3 NAG sing 262 n n C2 N2 NAG sing 263 n n C2 H2 NAG sing 264 n n C3 C4 NAG sing 265 n n C3 O3 NAG sing 266 n n C3 H3 NAG sing 267 n n C4 C5 NAG sing 268 n n C4 O4 NAG sing 269 n n C4 H4 NAG sing 270 n n C5 C6 NAG sing 271 n n C5 O5 NAG sing 272 n n C5 H5 NAG sing 273 n n C6 O6 NAG sing 274 n n C6 H61 NAG sing 275 n n C6 H62 NAG sing 276 n n C7 C8 NAG sing 277 n n C7 N2 NAG sing 278 n n C7 O7 NAG doub 279 n n C8 H81 NAG sing 280 n n C8 H82 NAG sing 281 n n C8 H83 NAG sing 282 n n N2 HN2 NAG sing 283 n n O1 HO1 NAG sing 284 n n O3 HO3 NAG sing 285 n n O4 HO4 NAG sing 286 n n O6 HO6 NAG sing 287 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9F2D _atom_sites.fract_transf_matrix[1][1] 0.010707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 4 NAG A 1 301 301 NAG NAG . W 4 NAG B 1 301 324 NAG NAG . X 4 NAG D 1 301 303 NAG NAG . Y 4 NAG E 1 301 301 NAG NAG . Z 4 NAG F 1 301 303 NAG NAG . AA 4 NAG H 1 301 301 NAG NAG . BA 4 NAG H 1 302 302 NAG NAG . CA 4 NAG I 1 301 301 NAG NAG . DA 4 NAG J 1 301 303 NAG NAG . EA 4 NAG L 1 301 301 NAG NAG . FA 4 NAG L 1 302 302 NAG NAG . GA 4 NAG N 1 301 301 NAG NAG . HA 4 NAG N 1 302 304 NAG NAG . IA 4 NAG O 1 301 301 NAG NAG . JA 4 NAG P 1 301 303 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . GA 4 13.262 4.871 -27.258 1 126.37 ? C1 NAG 301 N 1 HETATM 2 C C2 NAG . . . GA 4 11.855 4.845 -26.671 1 126.73 ? C2 NAG 301 N 1 HETATM 3 C C3 NAG . . . GA 4 11.509 6.232 -26.137 1 126.74 ? C3 NAG 301 N 1 HETATM 4 C C4 NAG . . . GA 4 12.567 6.691 -25.138 1 126.79 ? C4 NAG 301 N 1 HETATM 5 C C5 NAG . . . GA 4 13.995 6.512 -25.664 1 126.69 ? C5 NAG 301 N 1 HETATM 6 C C6 NAG . . . GA 4 15.037 6.635 -24.57 1 126.77 ? C6 NAG 301 N 1 HETATM 7 C C7 NAG . . . GA 4 10.317 5.01 -28.655 1 127.32 ? C7 NAG 301 N 1 HETATM 8 C C8 NAG . . . GA 4 9.166 4.333 -29.343 1 127.33 ? C8 NAG 301 N 1 HETATM 9 N N2 NAG . . . GA 4 10.833 4.353 -27.591 1 127.04 ? N2 NAG 301 N 1 HETATM 10 O O3 NAG . . . GA 4 10.205 6.237 -25.566 1 126.63 ? O3 NAG 301 N 1 HETATM 11 O O4 NAG . . . GA 4 12.374 8.079 -24.878 1 126.87 ? O4 NAG 301 N 1 HETATM 12 O O5 NAG . . . GA 4 14.195 5.206 -26.236 1 126.48 ? O5 NAG 301 N 1 HETATM 13 O O6 NAG . . . GA 4 14.732 7.651 -23.619 1 126.87 ? O6 NAG 301 N 1 HETATM 14 O O7 NAG . . . GA 4 10.786 6.069 -29.069 1 127.48 ? O7 NAG 301 N 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #