data_9F2K # _model_server_result.job_id IK6B1VK4-qYDybTSm9GcnA _model_server_result.datetime_utc '2024-11-24 07:51:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9F2K # _exptl.entry_id 9F2K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9F2K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 302.08 302.08 0 3 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 302.08 302.08 4 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 302.08 0 302.08 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 9F2K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NAD _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 553 _pdbx_nonpoly_scheme.pdb_mon_id NAD _pdbx_nonpoly_scheme.auth_mon_id NAD _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 170.478 142.677 170.246 1 12.02 ? PA NAD 601 A 1 HETATM 2 O O1A NAD . . . B 2 170.764 143.749 169.266 1 47.99 -1 O1A NAD 601 A 1 HETATM 3 O O2A NAD . . . B 2 169.637 143.013 171.424 1 31.38 ? O2A NAD 601 A 1 HETATM 4 O O5B NAD . . . B 2 171.866 142.062 170.73 1 33.26 ? O5B NAD 601 A 1 HETATM 5 C C5B NAD . . . B 2 171.981 140.682 171.114 1 23.52 ? C5B NAD 601 A 1 HETATM 6 C C4B NAD . . . B 2 172.748 140.634 172.409 1 22.84 ? C4B NAD 601 A 1 HETATM 7 O O4B NAD . . . B 2 173.912 139.792 172.243 1 32.11 ? O4B NAD 601 A 1 HETATM 8 C C3B NAD . . . B 2 173.286 141.98 172.92 1 28.91 ? C3B NAD 601 A 1 HETATM 9 O O3B NAD . . . B 2 172.873 142.203 174.262 1 34.59 ? O3B NAD 601 A 1 HETATM 10 C C2B NAD . . . B 2 174.808 141.834 172.833 1 30.28 ? C2B NAD 601 A 1 HETATM 11 O O2B NAD . . . B 2 175.483 142.505 173.87 1 34.22 ? O2B NAD 601 A 1 HETATM 12 C C1B NAD . . . B 2 174.95 140.334 173.017 1 27.8 ? C1B NAD 601 A 1 HETATM 13 N N9A NAD . . . B 2 176.214 139.767 172.574 1 19.4 ? N9A NAD 601 A 1 HETATM 14 C C8A NAD . . . B 2 176.946 140.128 171.476 1 26.9 ? C8A NAD 601 A 1 HETATM 15 N N7A NAD . . . B 2 178.03 139.415 171.321 1 25.84 ? N7A NAD 601 A 1 HETATM 16 C C5A NAD . . . B 2 178.008 138.522 172.382 1 26.55 ? C5A NAD 601 A 1 HETATM 17 C C6A NAD . . . B 2 178.885 137.495 172.775 1 30.03 ? C6A NAD 601 A 1 HETATM 18 N N6A NAD . . . B 2 180.002 137.184 172.127 1 27.6 ? N6A NAD 601 A 1 HETATM 19 N N1A NAD . . . B 2 178.563 136.794 173.885 1 18.55 ? N1A NAD 601 A 1 HETATM 20 C C2A NAD . . . B 2 177.441 137.112 174.539 1 20.28 ? C2A NAD 601 A 1 HETATM 21 N N3A NAD . . . B 2 176.546 138.05 174.262 1 23.12 ? N3A NAD 601 A 1 HETATM 22 C C4A NAD . . . B 2 176.891 138.731 173.161 1 25.7 ? C4A NAD 601 A 1 HETATM 23 O O3 NAD . . . B 2 169.844 141.463 169.419 1 30.58 ? O3 NAD 601 A 1 HETATM 24 P PN NAD . . . B 2 168.367 140.952 169.071 1 20.61 ? PN NAD 601 A 1 HETATM 25 O O1N NAD . . . B 2 167.586 142.049 168.44 1 29.43 -1 O1N NAD 601 A 1 HETATM 26 O O2N NAD . . . B 2 167.827 140.285 170.288 1 30.79 ? O2N NAD 601 A 1 HETATM 27 O O5D NAD . . . B 2 168.688 139.854 167.959 1 31.56 ? O5D NAD 601 A 1 HETATM 28 C C5D NAD . . . B 2 169.399 138.653 168.33 1 20.98 ? C5D NAD 601 A 1 HETATM 29 C C4D NAD . . . B 2 170.016 138.033 167.102 1 27.47 ? C4D NAD 601 A 1 HETATM 30 O O4D NAD . . . B 2 168.994 137.392 166.307 1 31.48 ? O4D NAD 601 A 1 HETATM 31 C C3D NAD . . . B 2 170.737 139.002 166.153 1 28.95 ? C3D NAD 601 A 1 HETATM 32 O O3D NAD . . . B 2 171.907 138.418 165.598 1 37.59 ? O3D NAD 601 A 1 HETATM 33 C C2D NAD . . . B 2 169.709 139.228 165.045 1 38.05 ? C2D NAD 601 A 1 HETATM 34 O O2D NAD . . . B 2 170.341 139.595 163.833 1 40.19 ? O2D NAD 601 A 1 HETATM 35 C C1D NAD . . . B 2 169.086 137.838 164.963 1 35.39 ? C1D NAD 601 A 1 HETATM 36 N N1N NAD . . . B 2 167.738 137.864 164.382 1 34.41 ? N1N NAD 601 A 1 HETATM 37 C C2N NAD . . . B 2 166.729 138.559 165.008 1 27.79 ? C2N NAD 601 A 1 HETATM 38 C C3N NAD . . . B 2 165.463 138.578 164.438 1 26.45 ? C3N NAD 601 A 1 HETATM 39 C C7N NAD . . . B 2 164.35 139.32 165.106 1 29.79 ? C7N NAD 601 A 1 HETATM 40 O O7N NAD . . . B 2 164.505 139.762 166.253 1 33.46 ? O7N NAD 601 A 1 HETATM 41 N N7N NAD . . . B 2 163.223 139.479 164.43 1 27.25 ? N7N NAD 601 A 1 HETATM 42 C C4N NAD . . . B 2 165.226 137.917 163.245 1 29.54 ? C4N NAD 601 A 1 HETATM 43 C C5N NAD . . . B 2 166.253 137.241 162.623 1 33.12 ? C5N NAD 601 A 1 HETATM 44 C C6N NAD . . . B 2 167.498 137.211 163.203 1 31.89 ? C6N NAD 601 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #