data_9F2V
#
_model_server_result.job_id            dM3OX0CS7X_RPXuyBYWAbA 
_model_server_result.datetime_utc      '2025-02-23 12:55:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9f2v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    9F2V 
#
_exptl.entry_id    9F2V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.554 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{R},3~{S})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-5-fluoranyl-2-oxidanylidene-pyridin-3-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.171 
_cell.angle_gamma         90 
_cell.entry_id            9F2V 
_cell.length_a            45.852 
_cell.length_b            63.688 
_cell.length_c            103.506 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9F2V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C19 A1H9E . A A1H9E 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C19 A1H9E . B A1H9E 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
#
_chem_comp.formula           'C24 H34 F N5 O7' 
_chem_comp.formula_weight    523.554 
_chem_comp.id                A1H9E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{R},3~{S})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-5-fluoranyl-2-oxidanylidene-pyridin-3-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 A1H9E sing 1 n n 
C5 N1 A1H9E sing 2 n n 
N1 C11 A1H9E sing 3 n n 
C1 C2 A1H9E doub 4 n n 
C2 C3 A1H9E sing 5 n n 
F1 C2 A1H9E sing 6 n n 
C3 C4 A1H9E doub 7 n n 
C4 C5 A1H9E sing 8 n n 
N2 C4 A1H9E sing 9 n n 
O2 C5 A1H9E doub 10 n n 
C6 N2 A1H9E sing 11 n n 
O1 C6 A1H9E sing 12 n n 
O3 C6 A1H9E doub 13 n n 
C7 O1 A1H9E sing 14 n n 
C8 C7 A1H9E sing 15 n n 
C9 C7 A1H9E sing 16 n n 
C10 C7 A1H9E sing 17 n n 
C12 C11 A1H9E sing 18 n n 
C11 C13 A1H9E sing 19 n n 
C14 C12 A1H9E sing 20 n n 
O4 C13 A1H9E doub 21 n n 
C13 N3 A1H9E sing 22 n n 
C14 C15 A1H9E sing 23 n n 
C16 C14 A1H9E sing 24 n n 
C15 C16 A1H9E sing 25 n n 
N3 C17 A1H9E sing 26 n n 
C18 C17 A1H9E sing 27 n n 
C17 C19 A1H9E sing 28 n n 
C21 C18 A1H9E sing 29 n n 
C19 C20 A1H9E sing 30 n n 
O6 C19 A1H9E sing 31 n n 
N4 C20 A1H9E sing 32 n n 
C20 O7 A1H9E doub 33 n n 
C21 C22 A1H9E sing 34 n n 
C24 C21 A1H9E sing 35 n n 
C22 N5 A1H9E sing 36 n n 
O5 C22 A1H9E doub 37 n n 
N5 C23 A1H9E sing 38 n n 
C23 C24 A1H9E sing 39 n n 
N3 H2 A1H9E sing 40 n n 
C8 H83 A1H9E sing 41 n n 
C8 H81 A1H9E sing 42 n n 
C8 H82 A1H9E sing 43 n n 
C10 H101 A1H9E sing 44 n n 
C10 H103 A1H9E sing 45 n n 
C10 H102 A1H9E sing 46 n n 
C15 H152 A1H9E sing 47 n n 
C15 H151 A1H9E sing 48 n n 
C17 H17 A1H9E sing 49 n n 
C21 H21 A1H9E sing 50 n n 
C24 H242 A1H9E sing 51 n n 
C24 H241 A1H9E sing 52 n n 
N4 HN42 A1H9E sing 53 n n 
N4 HN41 A1H9E sing 54 n n 
C19 H19 A1H9E sing 55 n n 
O6 HO6 A1H9E sing 56 n n 
C18 H182 A1H9E sing 57 n n 
C18 H181 A1H9E sing 58 n n 
C23 H231 A1H9E sing 59 n n 
C23 H232 A1H9E sing 60 n n 
N5 H4 A1H9E sing 61 n n 
C11 H11 A1H9E sing 62 n n 
C12 H121 A1H9E sing 63 n n 
C12 H122 A1H9E sing 64 n n 
C14 H14 A1H9E sing 65 n n 
C16 H161 A1H9E sing 66 n n 
C16 H162 A1H9E sing 67 n n 
C3 H3 A1H9E sing 68 n n 
C1 H1 A1H9E sing 69 n n 
N2 H5 A1H9E sing 70 n n 
C9 H93 A1H9E sing 71 n n 
C9 H91 A1H9E sing 72 n n 
C9 H92 A1H9E sing 73 n n 
#
_atom_sites.entry_id                     9F2V 
_atom_sites.fract_transf_matrix[1][1]    0.021809 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000446 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1H9E A 1 401 401 A1H9E LIG . 
D 2 A1H9E B 1 401 401 A1H9E LIG . 
E 3 HOH A 1 501 131 HOH HOH . 
E 3 HOH A 2 502 93 HOH HOH . 
E 3 HOH A 3 503 100 HOH HOH . 
E 3 HOH A 4 504 121 HOH HOH . 
E 3 HOH A 5 505 94 HOH HOH . 
E 3 HOH A 6 506 18 HOH HOH . 
E 3 HOH A 7 507 124 HOH HOH . 
E 3 HOH A 8 508 95 HOH HOH . 
E 3 HOH A 9 509 25 HOH HOH . 
E 3 HOH A 10 510 45 HOH HOH . 
E 3 HOH A 11 511 130 HOH HOH . 
E 3 HOH A 12 512 28 HOH HOH . 
E 3 HOH A 13 513 38 HOH HOH . 
E 3 HOH A 14 514 57 HOH HOH . 
E 3 HOH A 15 515 102 HOH HOH . 
E 3 HOH A 16 516 123 HOH HOH . 
E 3 HOH A 17 517 47 HOH HOH . 
E 3 HOH A 18 518 40 HOH HOH . 
E 3 HOH A 19 519 106 HOH HOH . 
E 3 HOH A 20 520 101 HOH HOH . 
E 3 HOH A 21 521 27 HOH HOH . 
E 3 HOH A 22 522 98 HOH HOH . 
E 3 HOH A 23 523 14 HOH HOH . 
E 3 HOH A 24 524 129 HOH HOH . 
E 3 HOH A 25 525 122 HOH HOH . 
E 3 HOH A 26 526 79 HOH HOH . 
E 3 HOH A 27 527 22 HOH HOH . 
E 3 HOH A 28 528 68 HOH HOH . 
E 3 HOH A 29 529 36 HOH HOH . 
E 3 HOH A 30 530 107 HOH HOH . 
E 3 HOH A 31 531 53 HOH HOH . 
E 3 HOH A 32 532 128 HOH HOH . 
E 3 HOH A 33 533 126 HOH HOH . 
E 3 HOH A 34 534 96 HOH HOH . 
E 3 HOH A 35 535 125 HOH HOH . 
E 3 HOH A 36 536 75 HOH HOH . 
E 3 HOH A 37 537 77 HOH HOH . 
E 3 HOH A 38 538 103 HOH HOH . 
E 3 HOH A 39 539 17 HOH HOH . 
E 3 HOH A 40 540 30 HOH HOH . 
E 3 HOH A 41 541 51 HOH HOH . 
E 3 HOH A 42 542 69 HOH HOH . 
E 3 HOH A 43 543 99 HOH HOH . 
E 3 HOH A 44 544 2 HOH HOH . 
E 3 HOH A 45 545 86 HOH HOH . 
E 3 HOH A 46 546 105 HOH HOH . 
E 3 HOH A 47 547 62 HOH HOH . 
E 3 HOH A 48 548 127 HOH HOH . 
E 3 HOH A 49 549 20 HOH HOH . 
E 3 HOH A 50 550 92 HOH HOH . 
E 3 HOH A 51 551 16 HOH HOH . 
E 3 HOH A 52 552 19 HOH HOH . 
E 3 HOH A 53 553 97 HOH HOH . 
E 3 HOH A 54 554 37 HOH HOH . 
E 3 HOH A 55 555 23 HOH HOH . 
E 3 HOH A 56 556 70 HOH HOH . 
E 3 HOH A 57 557 87 HOH HOH . 
E 3 HOH A 58 558 50 HOH HOH . 
E 3 HOH A 59 559 31 HOH HOH . 
E 3 HOH A 60 560 13 HOH HOH . 
E 3 HOH A 61 561 39 HOH HOH . 
E 3 HOH A 62 562 66 HOH HOH . 
E 3 HOH A 63 563 104 HOH HOH . 
E 3 HOH A 64 564 108 HOH HOH . 
F 3 HOH B 1 501 60 HOH HOH . 
F 3 HOH B 2 502 35 HOH HOH . 
F 3 HOH B 3 503 3 HOH HOH . 
F 3 HOH B 4 504 116 HOH HOH . 
F 3 HOH B 5 505 118 HOH HOH . 
F 3 HOH B 6 506 26 HOH HOH . 
F 3 HOH B 7 507 119 HOH HOH . 
F 3 HOH B 8 508 34 HOH HOH . 
F 3 HOH B 9 509 43 HOH HOH . 
F 3 HOH B 10 510 120 HOH HOH . 
F 3 HOH B 11 511 112 HOH HOH . 
F 3 HOH B 12 512 111 HOH HOH . 
F 3 HOH B 13 513 83 HOH HOH . 
F 3 HOH B 14 514 81 HOH HOH . 
F 3 HOH B 15 515 42 HOH HOH . 
F 3 HOH B 16 516 10 HOH HOH . 
F 3 HOH B 17 517 63 HOH HOH . 
F 3 HOH B 18 518 44 HOH HOH . 
F 3 HOH B 19 519 24 HOH HOH . 
F 3 HOH B 20 520 113 HOH HOH . 
F 3 HOH B 21 521 52 HOH HOH . 
F 3 HOH B 22 522 114 HOH HOH . 
F 3 HOH B 23 523 117 HOH HOH . 
F 3 HOH B 24 524 58 HOH HOH . 
F 3 HOH B 25 525 110 HOH HOH . 
F 3 HOH B 26 526 54 HOH HOH . 
F 3 HOH B 27 527 48 HOH HOH . 
F 3 HOH B 28 528 1 HOH HOH . 
F 3 HOH B 29 529 55 HOH HOH . 
F 3 HOH B 30 530 29 HOH HOH . 
F 3 HOH B 31 531 65 HOH HOH . 
F 3 HOH B 32 532 4 HOH HOH . 
F 3 HOH B 33 533 5 HOH HOH . 
F 3 HOH B 34 534 80 HOH HOH . 
F 3 HOH B 35 535 89 HOH HOH . 
F 3 HOH B 36 536 82 HOH HOH . 
F 3 HOH B 37 537 109 HOH HOH . 
F 3 HOH B 38 538 59 HOH HOH . 
F 3 HOH B 39 539 78 HOH HOH . 
F 3 HOH B 40 540 115 HOH HOH . 
F 3 HOH B 41 541 11 HOH HOH . 
F 3 HOH B 42 542 91 HOH HOH . 
F 3 HOH B 43 543 71 HOH HOH . 
F 3 HOH B 44 544 85 HOH HOH . 
F 3 HOH B 45 545 67 HOH HOH . 
F 3 HOH B 46 546 90 HOH HOH . 
F 3 HOH B 47 547 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A1H9E . . . C 2 -8.537 2.376 21.699 1 22.24 0 N1 A1H9E 401 A 1 
HETATM 2 N N3 A1H9E . . . C 2 -6.755 0.832 24.184 1 19.05 0 N3 A1H9E 401 A 1 
HETATM 3 C C4 A1H9E . . . C 2 -8.681 1.604 19.414 1 22.61 0 C4 A1H9E 401 A 1 
HETATM 4 C C5 A1H9E . . . C 2 -7.936 1.834 20.569 1 22.22 0 C5 A1H9E 401 A 1 
HETATM 5 C C6 A1H9E . . . C 2 -8.563 0.585 17.206 1 28.26 0 C6 A1H9E 401 A 1 
HETATM 6 C C7 A1H9E . . . C 2 -7.965 -0.022 14.803 1 36.47 0 C7 A1H9E 401 A 1 
HETATM 7 C C8 A1H9E . . . C 2 -8.207 1.359 14.188 1 38.76 0 C8 A1H9E 401 A 1 
HETATM 8 C C10 A1H9E . . . C 2 -9.158 -0.95 14.619 1 36.4 0 C10 A1H9E 401 A 1 
HETATM 9 C C13 A1H9E . . . C 2 -7.837 1.183 23.554 1 21.14 0 C13 A1H9E 401 A 1 
HETATM 10 C C15 A1H9E . . . C 2 -7.704 6.281 23.735 1 25.7 0 C15 A1H9E 401 A 1 
HETATM 11 C C17 A1H9E . . . C 2 -6.138 -0.246 24.995 1 21.84 0 C17 A1H9E 401 A 1 
HETATM 12 C C20 A1H9E . . . C 2 -6.866 -1.03 27.395 1 19.04 0 C20 A1H9E 401 A 1 
HETATM 13 C C21 A1H9E . . . C 2 -6.064 -1.855 23.001 1 22.53 0 C21 A1H9E 401 A 1 
HETATM 14 C C22 A1H9E . . . C 2 -4.946 -2.694 22.424 1 22.6 0 C22 A1H9E 401 A 1 
HETATM 15 C C24 A1H9E . . . C 2 -7.33 -2.626 22.606 1 22.41 0 C24 A1H9E 401 A 1 
HETATM 16 O O7 A1H9E . . . C 2 -6.182 -2.024 27.401 1 19.92 0 O7 A1H9E 401 A 1 
HETATM 17 N N4 A1H9E . . . C 2 -7.862 -0.865 28.257 1 18.14 0 N4 A1H9E 401 A 1 
HETATM 18 C C19 A1H9E . . . C 2 -6.659 0.036 26.403 1 20.37 0 C19 A1H9E 401 A 1 
HETATM 19 O O6 A1H9E . . . C 2 -7.307 1.214 26.772 1 20.07 0 O6 A1H9E 401 A 1 
HETATM 20 C C18 A1H9E . . . C 2 -6.048 -1.685 24.502 1 21.25 0 C18 A1H9E 401 A 1 
HETATM 21 C C23 A1H9E . . . C 2 -6.918 -3.811 21.715 1 23.27 0 C23 A1H9E 401 A 1 
HETATM 22 N N5 A1H9E . . . C 2 -5.461 -3.745 21.814 1 22.04 0 N5 A1H9E 401 A 1 
HETATM 23 O O5 A1H9E . . . C 2 -3.77 -2.407 22.466 1 22.01 0 O5 A1H9E 401 A 1 
HETATM 24 O O4 A1H9E . . . C 2 -8.82 0.501 23.399 1 19.96 0 O4 A1H9E 401 A 1 
HETATM 25 C C11 A1H9E . . . C 2 -7.729 2.552 22.908 1 22.07 0 C11 A1H9E 401 A 1 
HETATM 26 C C12 A1H9E . . . C 2 -8.197 3.782 23.697 1 20.61 0 C12 A1H9E 401 A 1 
HETATM 27 C C14 A1H9E . . . C 2 -7.139 4.867 23.681 1 24.64 0 C14 A1H9E 401 A 1 
HETATM 28 C C16 A1H9E . . . C 2 -6.94 5.813 22.513 1 26.12 0 C16 A1H9E 401 A 1 
HETATM 29 O O2 A1H9E . . . C 2 -6.74 1.557 20.65 1 18.34 0 O2 A1H9E 401 A 1 
HETATM 30 C C3 A1H9E . . . C 2 -10.024 1.935 19.436 1 23.75 0 C3 A1H9E 401 A 1 
HETATM 31 C C2 A1H9E . . . C 2 -10.593 2.463 20.596 1 27.32 0 C2 A1H9E 401 A 1 
HETATM 32 F F1 A1H9E . . . C 2 -11.882 2.786 20.722 1 29.14 0 F1 A1H9E 401 A 1 
HETATM 33 C C1 A1H9E . . . C 2 -9.832 2.678 21.703 1 24.84 0 C1 A1H9E 401 A 1 
HETATM 34 N N2 A1H9E . . . C 2 -8.011 1.086 18.3 1 25.4 0 N2 A1H9E 401 A 1 
HETATM 35 O O3 A1H9E . . . C 2 -9.758 0.5 17.035 1 31.38 0 O3 A1H9E 401 A 1 
HETATM 36 O O1 A1H9E . . . C 2 -7.671 0.102 16.183 1 33.34 0 O1 A1H9E 401 A 1 
HETATM 37 C C9 A1H9E . . . C 2 -6.737 -0.672 14.199 1 39.87 0 C9 A1H9E 401 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           37 
#