data_9F3L # _model_server_result.job_id kj6UrxPSMngbxC9Hel5NEg _model_server_result.datetime_utc '2025-09-07 12:14:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":502}' # _entry.id 9F3L # _exptl.entry_id 9F3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.92 _cell.angle_gamma 90 _cell.entry_id 9F3L _cell.length_a 202.412 _cell.length_b 88.34 _cell.length_c 212.45 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,BA,CA 1 1 C,D,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 261 n n C1 C3 MLI sing 262 n n C1 H11 MLI sing 263 n n C1 H12 MLI sing 264 n n C2 O6 MLI doub 265 n n C2 O7 MLI sing 266 n n C3 O8 MLI doub 267 n n C3 O9 MLI sing 268 n n # _atom_sites.entry_id 9F3L _atom_sites.fract_transf_matrix[1][1] 0.00494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MAN A 1 501 500 MAN MAN . F 3 MLI A 1 502 510 MLI MLI . G 3 MLI A 1 503 511 MLI MLI . H 3 MLI A 1 504 510 MLI MLI . I 2 MAN B 1 501 500 MAN MAN . J 3 MLI B 1 502 511 MLI MLI . K 3 MLI B 1 503 512 MLI MLI . L 3 MLI B 1 504 513 MLI MLI . M 3 MLI B 1 505 514 MLI MLI . N 2 MAN C 1 501 500 MAN MAN . O 3 MLI C 1 502 510 MLI MLI . P 3 MLI C 1 503 511 MLI MLI . Q 3 MLI C 1 504 512 MLI MLI . R 3 MLI C 1 505 513 MLI MLI . S 3 MLI C 1 506 514 MLI MLI . T 3 MLI C 1 507 510 MLI MLI . U 2 MAN D 1 501 500 MAN MAN . V 3 MLI D 1 502 511 MLI MLI . W 3 MLI D 1 503 512 MLI MLI . X 3 MLI D 1 504 513 MLI MLI . Y 3 MLI D 1 505 514 MLI MLI . Z 3 MLI D 1 506 515 MLI MLI . AA 3 MLI D 1 507 516 MLI MLI . BA 4 HOH A 1 601 559 HOH HOH . BA 4 HOH A 2 602 555 HOH HOH . BA 4 HOH A 3 603 558 HOH HOH . BA 4 HOH A 4 604 563 HOH HOH . BA 4 HOH A 5 605 554 HOH HOH . BA 4 HOH A 6 606 550 HOH HOH . BA 4 HOH A 7 607 560 HOH HOH . BA 4 HOH A 8 608 553 HOH HOH . BA 4 HOH A 9 609 562 HOH HOH . BA 4 HOH A 10 610 551 HOH HOH . BA 4 HOH A 11 611 552 HOH HOH . BA 4 HOH A 12 612 583 HOH HOH . BA 4 HOH A 13 613 561 HOH HOH . CA 4 HOH B 1 601 554 HOH HOH . CA 4 HOH B 2 602 558 HOH HOH . CA 4 HOH B 3 603 562 HOH HOH . CA 4 HOH B 4 604 552 HOH HOH . CA 4 HOH B 5 605 591 HOH HOH . CA 4 HOH B 6 606 568 HOH HOH . CA 4 HOH B 7 607 557 HOH HOH . CA 4 HOH B 8 608 563 HOH HOH . CA 4 HOH B 9 609 560 HOH HOH . CA 4 HOH B 10 610 572 HOH HOH . CA 4 HOH B 11 611 567 HOH HOH . CA 4 HOH B 12 612 561 HOH HOH . CA 4 HOH B 13 613 556 HOH HOH . CA 4 HOH B 14 614 569 HOH HOH . CA 4 HOH B 15 615 553 HOH HOH . CA 4 HOH B 16 616 566 HOH HOH . CA 4 HOH B 17 617 550 HOH HOH . CA 4 HOH B 18 618 559 HOH HOH . CA 4 HOH B 19 619 551 HOH HOH . CA 4 HOH B 20 620 555 HOH HOH . DA 4 HOH C 1 601 557 HOH HOH . DA 4 HOH C 2 602 598 HOH HOH . DA 4 HOH C 3 603 558 HOH HOH . DA 4 HOH C 4 604 555 HOH HOH . DA 4 HOH C 5 605 554 HOH HOH . DA 4 HOH C 6 606 569 HOH HOH . DA 4 HOH C 7 607 565 HOH HOH . DA 4 HOH C 8 608 553 HOH HOH . DA 4 HOH C 9 609 550 HOH HOH . DA 4 HOH C 10 610 570 HOH HOH . DA 4 HOH C 11 611 566 HOH HOH . DA 4 HOH C 12 612 552 HOH HOH . DA 4 HOH C 13 613 567 HOH HOH . DA 4 HOH C 14 614 585 HOH HOH . DA 4 HOH C 15 615 574 HOH HOH . DA 4 HOH C 16 616 563 HOH HOH . DA 4 HOH C 17 617 559 HOH HOH . DA 4 HOH C 18 618 571 HOH HOH . DA 4 HOH C 19 619 556 HOH HOH . DA 4 HOH C 20 620 568 HOH HOH . DA 4 HOH C 21 621 551 HOH HOH . DA 4 HOH C 22 622 572 HOH HOH . DA 4 HOH C 23 623 560 HOH HOH . EA 4 HOH D 1 601 601 HOH HOH . EA 4 HOH D 2 602 605 HOH HOH . EA 4 HOH D 3 603 579 HOH HOH . EA 4 HOH D 4 604 589 HOH HOH . EA 4 HOH D 5 605 568 HOH HOH . EA 4 HOH D 6 606 590 HOH HOH . EA 4 HOH D 7 607 602 HOH HOH . EA 4 HOH D 8 608 603 HOH HOH . EA 4 HOH D 9 609 573 HOH HOH . EA 4 HOH D 10 610 554 HOH HOH . EA 4 HOH D 11 611 597 HOH HOH . EA 4 HOH D 12 612 613 HOH HOH . EA 4 HOH D 13 613 593 HOH HOH . EA 4 HOH D 14 614 550 HOH HOH . EA 4 HOH D 15 615 604 HOH HOH . EA 4 HOH D 16 616 610 HOH HOH . EA 4 HOH D 17 617 607 HOH HOH . EA 4 HOH D 18 618 596 HOH HOH . EA 4 HOH D 19 619 594 HOH HOH . EA 4 HOH D 20 620 588 HOH HOH . EA 4 HOH D 21 621 559 HOH HOH . EA 4 HOH D 22 622 635 HOH HOH . EA 4 HOH D 23 623 556 HOH HOH . EA 4 HOH D 24 624 583 HOH HOH . EA 4 HOH D 25 625 567 HOH HOH . EA 4 HOH D 26 626 581 HOH HOH . EA 4 HOH D 27 627 575 HOH HOH . EA 4 HOH D 28 628 557 HOH HOH . EA 4 HOH D 29 629 563 HOH HOH . EA 4 HOH D 30 630 586 HOH HOH . EA 4 HOH D 31 631 611 HOH HOH . EA 4 HOH D 32 632 552 HOH HOH . EA 4 HOH D 33 633 592 HOH HOH . EA 4 HOH D 34 634 577 HOH HOH . EA 4 HOH D 35 635 595 HOH HOH . EA 4 HOH D 36 636 582 HOH HOH . EA 4 HOH D 37 637 614 HOH HOH . EA 4 HOH D 38 638 608 HOH HOH . EA 4 HOH D 39 639 616 HOH HOH . EA 4 HOH D 40 640 564 HOH HOH . EA 4 HOH D 41 641 576 HOH HOH . EA 4 HOH D 42 642 551 HOH HOH . EA 4 HOH D 43 643 561 HOH HOH . EA 4 HOH D 44 644 598 HOH HOH . EA 4 HOH D 45 645 555 HOH HOH . EA 4 HOH D 46 646 617 HOH HOH . EA 4 HOH D 47 647 566 HOH HOH . EA 4 HOH D 48 648 584 HOH HOH . EA 4 HOH D 49 649 600 HOH HOH . EA 4 HOH D 50 650 562 HOH HOH . EA 4 HOH D 51 651 570 HOH HOH . EA 4 HOH D 52 652 560 HOH HOH . EA 4 HOH D 53 653 571 HOH HOH . EA 4 HOH D 54 654 553 HOH HOH . EA 4 HOH D 55 655 591 HOH HOH . EA 4 HOH D 56 656 574 HOH HOH . EA 4 HOH D 57 657 569 HOH HOH . EA 4 HOH D 58 658 606 HOH HOH . EA 4 HOH D 59 659 580 HOH HOH . EA 4 HOH D 60 660 587 HOH HOH . EA 4 HOH D 61 661 572 HOH HOH . EA 4 HOH D 62 662 565 HOH HOH . EA 4 HOH D 63 663 558 HOH HOH . EA 4 HOH D 64 664 578 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . V 3 -48.069 49.267 63.992 1 71.66 ? C1 MLI 502 D 1 HETATM 2 C C2 MLI . . . V 3 -47.375 47.907 64.038 1 69.22 ? C2 MLI 502 D 1 HETATM 3 C C3 MLI . . . V 3 -47.149 50.478 63.812 1 74.32 ? C3 MLI 502 D 1 HETATM 4 O O6 MLI . . . V 3 -46.679 47.561 63.049 1 68.92 ? O6 MLI 502 D 1 HETATM 5 O O7 MLI . . . V 3 -47.55 47.195 65.056 1 66.55 ? O7 MLI 502 D 1 HETATM 6 O O8 MLI . . . V 3 -46.634 50.66 62.69 1 72.91 ? O8 MLI 502 D 1 HETATM 7 O O9 MLI . . . V 3 -46.97 51.237 64.793 1 74.15 ? O9 MLI 502 D 1 HETATM 8 H H11 MLI . . . V 3 -48.713 49.258 63.258 1 86.03 ? H11 MLI 502 D 1 HETATM 9 H H12 MLI . . . V 3 -48.572 49.384 64.82 1 86.03 ? H12 MLI 502 D 1 # _model_server_stats.io_time_ms 149 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #