data_9F3Q # _model_server_result.job_id EkxquraPy6ZrL_IA6Ox8iA _model_server_result.datetime_utc '2025-02-14 16:55:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 9F3Q # _exptl.entry_id 9F3Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 410.509 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9F3Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 180-meric _pdbx_struct_assembly.oligomeric_count 180 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 483.84 483.84 483.84 3 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 483.84 483.84 4 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 241.92 633.35478 92.40522 5 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 241.92 633.35478 391.43478 6 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 633.35478 391.43478 241.92 7 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 391.43478 241.92 633.35478 8 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 633.35478 391.43478 241.92 9 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 241.92 633.35478 92.40522 10 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 391.43478 241.92 -149.51478 11 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 483.84 483.84 0 12 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 633.35478 92.40522 241.92 13 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 483.84 483.84 483.84 14 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 633.35478 92.40522 241.92 15 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 391.43478 241.92 -149.51478 16 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 241.92 -149.51478 92.40522 17 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 483.84 0 0 18 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 483.84 0 483.84 19 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 633.35478 391.43478 241.92 20 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 483.84 0 483.84 21 'point symmetry operation' ? ? -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 241.92 -149.51478 92.40522 22 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0 0 483.84 23 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 241.92 -149.51478 391.43478 24 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 391.43478 241.92 633.35478 25 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 633.35478 92.40522 241.92 26 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 391.43478 241.92 633.35478 27 'point symmetry operation' ? ? -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 0 0 483.84 28 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 483.84 483.84 29 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 92.40522 241.92 633.35478 30 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 483.84 483.84 483.84 31 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 483.84 0 483.84 32 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0 483.84 0 33 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 483.84 483.84 0 34 'point symmetry operation' ? ? -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 241.92 633.35478 391.43478 35 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 241.92 633.35478 92.40522 36 'point symmetry operation' ? ? 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 -149.51478 391.43478 241.92 37 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 92.40522 241.92 -149.51478 38 'point symmetry operation' ? ? 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 -149.51478 391.43478 241.92 39 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 241.92 633.35478 391.43478 40 'point symmetry operation' ? ? -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 92.40522 241.92 633.35478 41 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 483.84 483.84 42 'point symmetry operation' ? ? 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 -149.51478 92.40522 241.92 43 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0 483.84 0 44 'point symmetry operation' ? ? 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 -149.51478 92.40522 241.92 45 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 92.40522 241.92 633.35478 46 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 241.92 -149.51478 391.43478 47 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0 0 483.84 48 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 49 'point symmetry operation' ? ? 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 -149.51478 391.43478 241.92 50 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 51 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 241.92 -149.51478 391.43478 52 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 483.84 0 0 53 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 241.92 -149.51478 92.40522 54 'point symmetry operation' ? ? -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 92.40522 241.92 -149.51478 55 'point symmetry operation' ? ? 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 -149.51478 92.40522 241.92 56 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0.5 0.309017 0.809017 92.40522 241.92 -149.51478 57 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 483.84 0 0 58 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 483.84 483.84 0 59 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 391.43478 241.92 -149.51478 60 'point symmetry operation' ? ? -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 0 483.84 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H30 N4 O3' _chem_comp.formula_weight 410.509 _chem_comp.id YM2 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAM YM2 sing 410 n n CAM OAV YM2 sing 411 n n OAV NAT YM2 sing 412 n n NAT CAD YM2 doub 413 e n CAD CAY YM2 sing 414 n n CAY CAJ YM2 sing 415 n y CAY CAI YM2 doub 416 n y CAJ CAL YM2 doub 417 n y CAL CAZ YM2 sing 418 n y CAI CAK YM2 sing 419 n y CAK CAZ YM2 doub 420 n y CAZ OAW YM2 sing 421 n n OAW CAN YM2 sing 422 n n CAN CAO YM2 sing 423 n n CAO CBB YM2 sing 424 n n CBB CAB YM2 sing 425 n n CBB CAP YM2 sing 426 n n CAP CAQ YM2 sing 427 n n CAQ NBC YM2 sing 428 n n NBC CAX YM2 sing 429 n n NBC CAR YM2 sing 430 n n CAX OAC YM2 doub 431 n n CAX NBD YM2 sing 432 n n CAR CAS YM2 sing 433 n n CAS NBD YM2 sing 434 n n NBD CBA YM2 sing 435 n n CBA CAG YM2 doub 436 n y CBA CAH YM2 sing 437 n y CAG CAE YM2 sing 438 n y CAE NAU YM2 doub 439 n y NAU CAF YM2 sing 440 n y CAF CAH YM2 doub 441 n y CAA HAA1 YM2 sing 442 n n CAA HAA2 YM2 sing 443 n n CAA HAA3 YM2 sing 444 n n CAM HAM1 YM2 sing 445 n n CAM HAM2 YM2 sing 446 n n CAD HAD1 YM2 sing 447 n n CAJ HAJ YM2 sing 448 n n CAI HAI YM2 sing 449 n n CAL HAL YM2 sing 450 n n CAK HAK YM2 sing 451 n n CAN HAN1 YM2 sing 452 n n CAN HAN2 YM2 sing 453 n n CAO HAO1 YM2 sing 454 n n CAO HAO2 YM2 sing 455 n n CBB HBB YM2 sing 456 n n CAB HAB1 YM2 sing 457 n n CAB HAB2 YM2 sing 458 n n CAB HAB3 YM2 sing 459 n n CAP HAP1 YM2 sing 460 n n CAP HAP2 YM2 sing 461 n n CAQ HAQ1 YM2 sing 462 n n CAQ HAQ2 YM2 sing 463 n n CAR HAR1 YM2 sing 464 n n CAR HAR2 YM2 sing 465 n n CAS HAS1 YM2 sing 466 n n CAS HAS2 YM2 sing 467 n n CAG HAG YM2 sing 468 n n CAH HAH YM2 sing 469 n n CAE HAE YM2 sing 470 n n CAF HAF YM2 sing 471 n n # _atom_sites.entry_id 9F3Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 YM2 A 1 401 401 YM2 YM2 . E 5 GSH A 1 402 301 GSH GSH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA YM2 . . . D 4 247.32 292.614 367.2 1 21.17 ? CAA YM2 401 A 1 HETATM 2 C CAM YM2 . . . D 4 246.107 292.206 366.503 1 19.4 ? CAM YM2 401 A 1 HETATM 3 O OAV YM2 . . . D 4 246.398 290.906 366.015 1 30.3 ? OAV YM2 401 A 1 HETATM 4 N NAT YM2 . . . D 4 245.415 290.008 366.465 1 23.26 ? NAT YM2 401 A 1 HETATM 5 C CAD YM2 . . . D 4 245.646 288.826 366.053 1 21.64 ? CAD YM2 401 A 1 HETATM 6 C CAY YM2 . . . D 4 244.854 287.679 366.5 1 21.44 ? CAY YM2 401 A 1 HETATM 7 C CAJ YM2 . . . D 4 245.171 286.386 366.09 1 18.97 ? CAJ YM2 401 A 1 HETATM 8 C CAL YM2 . . . D 4 244.479 285.29 366.571 1 18.79 ? CAL YM2 401 A 1 HETATM 9 C CAI YM2 . . . D 4 243.798 287.838 367.394 1 16.15 ? CAI YM2 401 A 1 HETATM 10 C CAK YM2 . . . D 4 243.098 286.749 367.88 1 17.91 ? CAK YM2 401 A 1 HETATM 11 C CAZ YM2 . . . D 4 243.447 285.473 367.476 1 17.9 ? CAZ YM2 401 A 1 HETATM 12 O OAW YM2 . . . D 4 242.8 284.38 367.989 1 21.99 ? OAW YM2 401 A 1 HETATM 13 C CAN YM2 . . . D 4 241.503 284.072 367.467 1 25.86 ? CAN YM2 401 A 1 HETATM 14 C CAO YM2 . . . D 4 240.907 282.94 368.27 1 16.46 ? CAO YM2 401 A 1 HETATM 15 C CBB YM2 . . . D 4 239.439 282.786 367.873 1 20.74 ? CBB YM2 401 A 1 HETATM 16 C CAB YM2 . . . D 4 239.295 282.438 366.396 1 22.09 ? CAB YM2 401 A 1 HETATM 17 C CAP YM2 . . . D 4 238.726 281.764 368.755 1 17.29 ? CAP YM2 401 A 1 HETATM 18 C CAQ YM2 . . . D 4 237.208 281.868 368.745 1 12.65 ? CAQ YM2 401 A 1 HETATM 19 N NBC YM2 . . . D 4 236.52 280.714 369.331 1 18.69 ? NBC YM2 401 A 1 HETATM 20 C CAX YM2 . . . D 4 236.315 280.565 370.67 1 21.88 ? CAX YM2 401 A 1 HETATM 21 O OAC YM2 . . . D 4 236.545 281.402 371.52 1 17.62 ? OAC YM2 401 A 1 HETATM 22 C CAR YM2 . . . D 4 236.387 279.438 368.62 1 17.89 ? CAR YM2 401 A 1 HETATM 23 C CAS YM2 . . . D 4 235.633 278.572 369.603 1 16.9 ? CAS YM2 401 A 1 HETATM 24 N NBD YM2 . . . D 4 235.79 279.303 370.866 1 16.87 ? NBD YM2 401 A 1 HETATM 25 C CBA YM2 . . . D 4 235.425 278.725 372.119 1 15.67 ? CBA YM2 401 A 1 HETATM 26 C CAG YM2 . . . D 4 235.787 279.317 373.317 1 16.11 ? CAG YM2 401 A 1 HETATM 27 C CAE YM2 . . . D 4 235.409 278.718 374.502 1 20.67 ? CAE YM2 401 A 1 HETATM 28 N NAU YM2 . . . D 4 234.705 277.586 374.568 1 21.84 ? NAU YM2 401 A 1 HETATM 29 C CAF YM2 . . . D 4 234.36 277.026 373.407 1 17.31 ? CAF YM2 401 A 1 HETATM 30 C CAH YM2 . . . D 4 234.694 277.55 372.175 1 17.9 ? CAH YM2 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #