data_9F4E # _model_server_result.job_id 9hn7do-kYmpKABm0GIiJCA _model_server_result.datetime_utc '2024-11-22 14:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F4E # _exptl.entry_id 9F4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 249.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.05 _cell.angle_gamma 90 _cell.entry_id 9F4E _cell.length_a 37.9 _cell.length_b 43.92 _cell.length_c 55.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H11 N3 O2 S' _chem_comp.formula_weight 249.289 _chem_comp.id VZM _chem_comp.mon_nstd_flag . _chem_comp.name "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O VZM sing 376 n n O C1 VZM sing 377 n n C1 C2 VZM doub 378 n y C1 N2 VZM sing 379 n y C2 C3 VZM sing 380 n y N2 C10 VZM doub 381 n y C3 C4 VZM doub 382 n y C10 C4 VZM sing 383 n y C4 N VZM sing 384 n n O1 C5 VZM doub 385 n n N C5 VZM sing 386 n n C5 N1 VZM sing 387 n n S C6 VZM sing 388 n y S C9 VZM sing 389 n y N1 C6 VZM sing 390 n n C6 C7 VZM doub 391 n y C9 C8 VZM doub 392 n y C7 C8 VZM sing 393 n y N1 H1 VZM sing 394 n n C7 H2 VZM sing 395 n n C8 H3 VZM sing 396 n n C10 H4 VZM sing 397 n n C9 H5 VZM sing 398 n n N H6 VZM sing 399 n n C3 H7 VZM sing 400 n n C2 H8 VZM sing 401 n n C H9 VZM sing 402 n n C H10 VZM sing 403 n n C H11 VZM sing 404 n n # _atom_sites.entry_id 9F4E _atom_sites.fract_transf_matrix[1][1] 0.026385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001868 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VZM A 1 201 1 VZM LIG . C 3 HOH A 1 301 195 HOH HOH . C 3 HOH A 2 302 143 HOH HOH . C 3 HOH A 3 303 186 HOH HOH . C 3 HOH A 4 304 116 HOH HOH . C 3 HOH A 5 305 130 HOH HOH . C 3 HOH A 6 306 86 HOH HOH . C 3 HOH A 7 307 140 HOH HOH . C 3 HOH A 8 308 65 HOH HOH . C 3 HOH A 9 309 39 HOH HOH . C 3 HOH A 10 310 175 HOH HOH . C 3 HOH A 11 311 3 HOH HOH . C 3 HOH A 12 312 198 HOH HOH . C 3 HOH A 13 313 42 HOH HOH . C 3 HOH A 14 314 56 HOH HOH . C 3 HOH A 15 315 163 HOH HOH . C 3 HOH A 16 316 94 HOH HOH . C 3 HOH A 17 317 156 HOH HOH . C 3 HOH A 18 318 102 HOH HOH . C 3 HOH A 19 319 92 HOH HOH . C 3 HOH A 20 320 25 HOH HOH . C 3 HOH A 21 321 80 HOH HOH . C 3 HOH A 22 322 44 HOH HOH . C 3 HOH A 23 323 18 HOH HOH . C 3 HOH A 24 324 1 HOH HOH . C 3 HOH A 25 325 16 HOH HOH . C 3 HOH A 26 326 41 HOH HOH . C 3 HOH A 27 327 192 HOH HOH . C 3 HOH A 28 328 8 HOH HOH . C 3 HOH A 29 329 12 HOH HOH . C 3 HOH A 30 330 15 HOH HOH . C 3 HOH A 31 331 113 HOH HOH . C 3 HOH A 32 332 123 HOH HOH . C 3 HOH A 33 333 53 HOH HOH . C 3 HOH A 34 334 19 HOH HOH . C 3 HOH A 35 335 109 HOH HOH . C 3 HOH A 36 336 160 HOH HOH . C 3 HOH A 37 337 13 HOH HOH . C 3 HOH A 38 338 69 HOH HOH . C 3 HOH A 39 339 9 HOH HOH . C 3 HOH A 40 340 10 HOH HOH . C 3 HOH A 41 341 11 HOH HOH . C 3 HOH A 42 342 206 HOH HOH . C 3 HOH A 43 343 180 HOH HOH . C 3 HOH A 44 344 184 HOH HOH . C 3 HOH A 45 345 14 HOH HOH . C 3 HOH A 46 346 129 HOH HOH . C 3 HOH A 47 347 204 HOH HOH . C 3 HOH A 48 348 21 HOH HOH . C 3 HOH A 49 349 93 HOH HOH . C 3 HOH A 50 350 97 HOH HOH . C 3 HOH A 51 351 22 HOH HOH . C 3 HOH A 52 352 121 HOH HOH . C 3 HOH A 53 353 2 HOH HOH . C 3 HOH A 54 354 162 HOH HOH . C 3 HOH A 55 355 4 HOH HOH . C 3 HOH A 56 356 67 HOH HOH . C 3 HOH A 57 357 159 HOH HOH . C 3 HOH A 58 358 68 HOH HOH . C 3 HOH A 59 359 55 HOH HOH . C 3 HOH A 60 360 30 HOH HOH . C 3 HOH A 61 361 62 HOH HOH . C 3 HOH A 62 362 51 HOH HOH . C 3 HOH A 63 363 37 HOH HOH . C 3 HOH A 64 364 101 HOH HOH . C 3 HOH A 65 365 35 HOH HOH . C 3 HOH A 66 366 132 HOH HOH . C 3 HOH A 67 367 27 HOH HOH . C 3 HOH A 68 368 45 HOH HOH . C 3 HOH A 69 369 157 HOH HOH . C 3 HOH A 70 370 23 HOH HOH . C 3 HOH A 71 371 158 HOH HOH . C 3 HOH A 72 372 111 HOH HOH . C 3 HOH A 73 373 36 HOH HOH . C 3 HOH A 74 374 20 HOH HOH . C 3 HOH A 75 375 49 HOH HOH . C 3 HOH A 76 376 48 HOH HOH . C 3 HOH A 77 377 85 HOH HOH . C 3 HOH A 78 378 54 HOH HOH . C 3 HOH A 79 379 178 HOH HOH . C 3 HOH A 80 380 52 HOH HOH . C 3 HOH A 81 381 5 HOH HOH . C 3 HOH A 82 382 61 HOH HOH . C 3 HOH A 83 383 28 HOH HOH . C 3 HOH A 84 384 26 HOH HOH . C 3 HOH A 85 385 103 HOH HOH . C 3 HOH A 86 386 89 HOH HOH . C 3 HOH A 87 387 6 HOH HOH . C 3 HOH A 88 388 24 HOH HOH . C 3 HOH A 89 389 46 HOH HOH . C 3 HOH A 90 390 43 HOH HOH . C 3 HOH A 91 391 142 HOH HOH . C 3 HOH A 92 392 32 HOH HOH . C 3 HOH A 93 393 70 HOH HOH . C 3 HOH A 94 394 166 HOH HOH . C 3 HOH A 95 395 47 HOH HOH . C 3 HOH A 96 396 33 HOH HOH . C 3 HOH A 97 397 7 HOH HOH . C 3 HOH A 98 398 60 HOH HOH . C 3 HOH A 99 399 177 HOH HOH . C 3 HOH A 100 400 99 HOH HOH . C 3 HOH A 101 401 38 HOH HOH . C 3 HOH A 102 402 153 HOH HOH . C 3 HOH A 103 403 154 HOH HOH . C 3 HOH A 104 404 145 HOH HOH . C 3 HOH A 105 405 59 HOH HOH . C 3 HOH A 106 406 174 HOH HOH . C 3 HOH A 107 407 95 HOH HOH . C 3 HOH A 108 408 90 HOH HOH . C 3 HOH A 109 409 150 HOH HOH . C 3 HOH A 110 410 170 HOH HOH . C 3 HOH A 111 411 138 HOH HOH . C 3 HOH A 112 412 125 HOH HOH . C 3 HOH A 113 413 119 HOH HOH . C 3 HOH A 114 414 211 HOH HOH . C 3 HOH A 115 415 83 HOH HOH . C 3 HOH A 116 416 120 HOH HOH . C 3 HOH A 117 417 64 HOH HOH . C 3 HOH A 118 418 96 HOH HOH . C 3 HOH A 119 419 82 HOH HOH . C 3 HOH A 120 420 50 HOH HOH . C 3 HOH A 121 421 135 HOH HOH . C 3 HOH A 122 422 71 HOH HOH . C 3 HOH A 123 423 40 HOH HOH . C 3 HOH A 124 424 189 HOH HOH . C 3 HOH A 125 425 124 HOH HOH . C 3 HOH A 126 426 72 HOH HOH . C 3 HOH A 127 427 74 HOH HOH . C 3 HOH A 128 428 17 HOH HOH . C 3 HOH A 129 429 117 HOH HOH . C 3 HOH A 130 430 88 HOH HOH . C 3 HOH A 131 431 75 HOH HOH . C 3 HOH A 132 432 84 HOH HOH . C 3 HOH A 133 433 155 HOH HOH . C 3 HOH A 134 434 133 HOH HOH . C 3 HOH A 135 435 91 HOH HOH . C 3 HOH A 136 436 167 HOH HOH . C 3 HOH A 137 437 194 HOH HOH . C 3 HOH A 138 438 191 HOH HOH . C 3 HOH A 139 439 137 HOH HOH . C 3 HOH A 140 440 114 HOH HOH . C 3 HOH A 141 441 105 HOH HOH . C 3 HOH A 142 442 209 HOH HOH . C 3 HOH A 143 443 127 HOH HOH . C 3 HOH A 144 444 66 HOH HOH . C 3 HOH A 145 445 146 HOH HOH . C 3 HOH A 146 446 151 HOH HOH . C 3 HOH A 147 447 171 HOH HOH . C 3 HOH A 148 448 29 HOH HOH . C 3 HOH A 149 449 108 HOH HOH . C 3 HOH A 150 450 115 HOH HOH . C 3 HOH A 151 451 147 HOH HOH . C 3 HOH A 152 452 164 HOH HOH . C 3 HOH A 153 453 107 HOH HOH . C 3 HOH A 154 454 58 HOH HOH . C 3 HOH A 155 455 128 HOH HOH . C 3 HOH A 156 456 136 HOH HOH . C 3 HOH A 157 457 110 HOH HOH . C 3 HOH A 158 458 149 HOH HOH . C 3 HOH A 159 459 122 HOH HOH . C 3 HOH A 160 460 34 HOH HOH . C 3 HOH A 161 461 112 HOH HOH . C 3 HOH A 162 462 106 HOH HOH . C 3 HOH A 163 463 98 HOH HOH . C 3 HOH A 164 464 81 HOH HOH . C 3 HOH A 165 465 100 HOH HOH . C 3 HOH A 166 466 190 HOH HOH . C 3 HOH A 167 467 126 HOH HOH . C 3 HOH A 168 468 217 HOH HOH . C 3 HOH A 169 469 161 HOH HOH . C 3 HOH A 170 470 63 HOH HOH . C 3 HOH A 171 471 165 HOH HOH . C 3 HOH A 172 472 134 HOH HOH . C 3 HOH A 173 473 203 HOH HOH . C 3 HOH A 174 474 87 HOH HOH . C 3 HOH A 175 475 118 HOH HOH . C 3 HOH A 176 476 77 HOH HOH . C 3 HOH A 177 477 144 HOH HOH . C 3 HOH A 178 478 201 HOH HOH . C 3 HOH A 179 479 152 HOH HOH . C 3 HOH A 180 480 141 HOH HOH . C 3 HOH A 181 481 79 HOH HOH . C 3 HOH A 182 482 148 HOH HOH . C 3 HOH A 183 483 104 HOH HOH . C 3 HOH A 184 484 197 HOH HOH . C 3 HOH A 185 485 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VZM . . . B 2 -20.254 -4.792 8.623 0.61 34.57 ? N1 VZM 201 A 1 HETATM 2 C C4 VZM . . . B 2 -19.033 -7.423 8.033 0.61 33.72 ? C4 VZM 201 A 1 HETATM 3 C C5 VZM . . . B 2 -20.902 -5.978 8.847 0.61 35.13 ? C5 VZM 201 A 1 HETATM 4 C C6 VZM . . . B 2 -19.914 -3.856 9.572 0.61 33.16 ? C6 VZM 201 A 1 HETATM 5 C C7 VZM . . . B 2 -20.613 -2.736 9.904 0.61 27.67 ? C7 VZM 201 A 1 HETATM 6 C C8 VZM . . . B 2 -19.779 -1.833 10.611 0.61 27.2 ? C8 VZM 201 A 1 HETATM 7 C C10 VZM . . . B 2 -18.047 -6.919 8.875 0.61 37.25 ? C10 VZM 201 A 1 HETATM 8 O O1 VZM . . . B 2 -21.867 -6.051 9.588 0.61 34.25 ? O1 VZM 201 A 1 HETATM 9 S S VZM . . . B 2 -18.438 -3.962 10.474 0.61 42.63 ? S VZM 201 A 1 HETATM 10 C C9 VZM . . . B 2 -18.531 -2.303 10.791 0.61 29.14 ? C9 VZM 201 A 1 HETATM 11 N N VZM . . . B 2 -20.371 -7.019 8.138 0.61 35.28 ? N VZM 201 A 1 HETATM 12 C C3 VZM . . . B 2 -18.649 -8.36 7.084 0.61 33.4 ? C3 VZM 201 A 1 HETATM 13 C C2 VZM . . . B 2 -17.349 -8.741 6.997 0.61 35.06 ? C2 VZM 201 A 1 HETATM 14 N N2 VZM . . . B 2 -16.764 -7.283 8.797 0.61 35.6 ? N2 VZM 201 A 1 HETATM 15 C C1 VZM . . . B 2 -16.442 -8.17 7.879 0.61 37.43 ? C1 VZM 201 A 1 HETATM 16 O O VZM . . . B 2 -15.146 -8.557 7.786 0.61 33.56 ? O VZM 201 A 1 HETATM 17 C C VZM . . . B 2 -14.883 -9.894 7.342 0.61 37.84 ? C VZM 201 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #