data_9F4G # _model_server_result.job_id B_fqq8Z8mEe3VsrJ4nPJvg _model_server_result.datetime_utc '2024-11-18 00:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F4G # _exptl.entry_id 9F4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.22 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-fluoranylpyridin-2-yl)-1-methyl-piperazin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.12 _cell.angle_gamma 90 _cell.entry_id 9F4G _cell.length_a 37.943 _cell.length_b 43.855 _cell.length_c 55.829 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id CE2 _struct_conn.ptnr1_label_comp_id PHE _struct_conn.ptnr1_label_seq_id 20 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PHE _struct_conn.ptnr1_auth_seq_id 17 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id SZE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SZE _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.381 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 F N3 O' _chem_comp.formula_weight 209.22 _chem_comp.id SZE _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-fluoranylpyridin-2-yl)-1-methyl-piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3-fluoropyridin-2-yl)-1-methylpiperazin-2-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C4 SZE doub 290 n n C N SZE sing 291 n n C4 N SZE sing 292 n n C4 C3 SZE sing 293 n n N C1 SZE sing 294 n n C3 N1 SZE sing 295 n n C1 C2 SZE sing 296 n n N1 C2 SZE sing 297 n n N1 C5 SZE sing 298 n n N2 C5 SZE doub 299 n y N2 C6 SZE sing 300 n y C5 C9 SZE sing 301 n y C6 C7 SZE doub 302 n y C9 F SZE sing 303 n n C9 C8 SZE doub 304 n y C7 C8 SZE sing 305 n y C6 H1 SZE sing 306 n n C7 H2 SZE sing 307 n n C8 H3 SZE sing 308 n n C2 H4 SZE sing 309 n n C2 H5 SZE sing 310 n n C1 H6 SZE sing 311 n n C1 H7 SZE sing 312 n n C3 H8 SZE sing 313 n n C3 H9 SZE sing 314 n n C H10 SZE sing 315 n n C H11 SZE sing 316 n n C H12 SZE sing 317 n n # _atom_sites.entry_id 9F4G _atom_sites.fract_transf_matrix[1][1] 0.026355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001898 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SZE A 1 201 1 SZE LIG . C 3 HOH A 1 301 199 HOH HOH . C 3 HOH A 2 302 126 HOH HOH . C 3 HOH A 3 303 68 HOH HOH . C 3 HOH A 4 304 103 HOH HOH . C 3 HOH A 5 305 189 HOH HOH . C 3 HOH A 6 306 67 HOH HOH . C 3 HOH A 7 307 117 HOH HOH . C 3 HOH A 8 308 122 HOH HOH . C 3 HOH A 9 309 96 HOH HOH . C 3 HOH A 10 310 136 HOH HOH . C 3 HOH A 11 311 115 HOH HOH . C 3 HOH A 12 312 139 HOH HOH . C 3 HOH A 13 313 83 HOH HOH . C 3 HOH A 14 314 112 HOH HOH . C 3 HOH A 15 315 110 HOH HOH . C 3 HOH A 16 316 95 HOH HOH . C 3 HOH A 17 317 43 HOH HOH . C 3 HOH A 18 318 102 HOH HOH . C 3 HOH A 19 319 18 HOH HOH . C 3 HOH A 20 320 13 HOH HOH . C 3 HOH A 21 321 2 HOH HOH . C 3 HOH A 22 322 161 HOH HOH . C 3 HOH A 23 323 204 HOH HOH . C 3 HOH A 24 324 207 HOH HOH . C 3 HOH A 25 325 31 HOH HOH . C 3 HOH A 26 326 22 HOH HOH . C 3 HOH A 27 327 75 HOH HOH . C 3 HOH A 28 328 150 HOH HOH . C 3 HOH A 29 329 5 HOH HOH . C 3 HOH A 30 330 33 HOH HOH . C 3 HOH A 31 331 17 HOH HOH . C 3 HOH A 32 332 49 HOH HOH . C 3 HOH A 33 333 174 HOH HOH . C 3 HOH A 34 334 144 HOH HOH . C 3 HOH A 35 335 211 HOH HOH . C 3 HOH A 36 336 7 HOH HOH . C 3 HOH A 37 337 74 HOH HOH . C 3 HOH A 38 338 69 HOH HOH . C 3 HOH A 39 339 182 HOH HOH . C 3 HOH A 40 340 36 HOH HOH . C 3 HOH A 41 341 10 HOH HOH . C 3 HOH A 42 342 91 HOH HOH . C 3 HOH A 43 343 3 HOH HOH . C 3 HOH A 44 344 12 HOH HOH . C 3 HOH A 45 345 147 HOH HOH . C 3 HOH A 46 346 181 HOH HOH . C 3 HOH A 47 347 53 HOH HOH . C 3 HOH A 48 348 66 HOH HOH . C 3 HOH A 49 349 81 HOH HOH . C 3 HOH A 50 350 45 HOH HOH . C 3 HOH A 51 351 44 HOH HOH . C 3 HOH A 52 352 4 HOH HOH . C 3 HOH A 53 353 11 HOH HOH . C 3 HOH A 54 354 114 HOH HOH . C 3 HOH A 55 355 185 HOH HOH . C 3 HOH A 56 356 60 HOH HOH . C 3 HOH A 57 357 6 HOH HOH . C 3 HOH A 58 358 65 HOH HOH . C 3 HOH A 59 359 25 HOH HOH . C 3 HOH A 60 360 56 HOH HOH . C 3 HOH A 61 361 28 HOH HOH . C 3 HOH A 62 362 133 HOH HOH . C 3 HOH A 63 363 42 HOH HOH . C 3 HOH A 64 364 72 HOH HOH . C 3 HOH A 65 365 54 HOH HOH . C 3 HOH A 66 366 98 HOH HOH . C 3 HOH A 67 367 21 HOH HOH . C 3 HOH A 68 368 30 HOH HOH . C 3 HOH A 69 369 15 HOH HOH . C 3 HOH A 70 370 39 HOH HOH . C 3 HOH A 71 371 93 HOH HOH . C 3 HOH A 72 372 19 HOH HOH . C 3 HOH A 73 373 208 HOH HOH . C 3 HOH A 74 374 125 HOH HOH . C 3 HOH A 75 375 64 HOH HOH . C 3 HOH A 76 376 1 HOH HOH . C 3 HOH A 77 377 57 HOH HOH . C 3 HOH A 78 378 188 HOH HOH . C 3 HOH A 79 379 124 HOH HOH . C 3 HOH A 80 380 9 HOH HOH . C 3 HOH A 81 381 46 HOH HOH . C 3 HOH A 82 382 23 HOH HOH . C 3 HOH A 83 383 180 HOH HOH . C 3 HOH A 84 384 106 HOH HOH . C 3 HOH A 85 385 16 HOH HOH . C 3 HOH A 86 386 142 HOH HOH . C 3 HOH A 87 387 32 HOH HOH . C 3 HOH A 88 388 35 HOH HOH . C 3 HOH A 89 389 71 HOH HOH . C 3 HOH A 90 390 176 HOH HOH . C 3 HOH A 91 391 201 HOH HOH . C 3 HOH A 92 392 41 HOH HOH . C 3 HOH A 93 393 172 HOH HOH . C 3 HOH A 94 394 196 HOH HOH . C 3 HOH A 95 395 145 HOH HOH . C 3 HOH A 96 396 84 HOH HOH . C 3 HOH A 97 397 107 HOH HOH . C 3 HOH A 98 398 26 HOH HOH . C 3 HOH A 99 399 20 HOH HOH . C 3 HOH A 100 400 90 HOH HOH . C 3 HOH A 101 401 34 HOH HOH . C 3 HOH A 102 402 155 HOH HOH . C 3 HOH A 103 403 29 HOH HOH . C 3 HOH A 104 404 14 HOH HOH . C 3 HOH A 105 405 129 HOH HOH . C 3 HOH A 106 406 37 HOH HOH . C 3 HOH A 107 407 167 HOH HOH . C 3 HOH A 108 408 116 HOH HOH . C 3 HOH A 109 409 141 HOH HOH . C 3 HOH A 110 410 52 HOH HOH . C 3 HOH A 111 411 195 HOH HOH . C 3 HOH A 112 412 70 HOH HOH . C 3 HOH A 113 413 38 HOH HOH . C 3 HOH A 114 414 24 HOH HOH . C 3 HOH A 115 415 62 HOH HOH . C 3 HOH A 116 416 99 HOH HOH . C 3 HOH A 117 417 140 HOH HOH . C 3 HOH A 118 418 73 HOH HOH . C 3 HOH A 119 419 76 HOH HOH . C 3 HOH A 120 420 48 HOH HOH . C 3 HOH A 121 421 120 HOH HOH . C 3 HOH A 122 422 55 HOH HOH . C 3 HOH A 123 423 40 HOH HOH . C 3 HOH A 124 424 27 HOH HOH . C 3 HOH A 125 425 198 HOH HOH . C 3 HOH A 126 426 86 HOH HOH . C 3 HOH A 127 427 118 HOH HOH . C 3 HOH A 128 428 87 HOH HOH . C 3 HOH A 129 429 128 HOH HOH . C 3 HOH A 130 430 101 HOH HOH . C 3 HOH A 131 431 8 HOH HOH . C 3 HOH A 132 432 63 HOH HOH . C 3 HOH A 133 433 113 HOH HOH . C 3 HOH A 134 434 149 HOH HOH . C 3 HOH A 135 435 194 HOH HOH . C 3 HOH A 136 436 166 HOH HOH . C 3 HOH A 137 437 131 HOH HOH . C 3 HOH A 138 438 135 HOH HOH . C 3 HOH A 139 439 97 HOH HOH . C 3 HOH A 140 440 82 HOH HOH . C 3 HOH A 141 441 100 HOH HOH . C 3 HOH A 142 442 50 HOH HOH . C 3 HOH A 143 443 58 HOH HOH . C 3 HOH A 144 444 192 HOH HOH . C 3 HOH A 145 445 47 HOH HOH . C 3 HOH A 146 446 186 HOH HOH . C 3 HOH A 147 447 170 HOH HOH . C 3 HOH A 148 448 130 HOH HOH . C 3 HOH A 149 449 134 HOH HOH . C 3 HOH A 150 450 148 HOH HOH . C 3 HOH A 151 451 158 HOH HOH . C 3 HOH A 152 452 51 HOH HOH . C 3 HOH A 153 453 79 HOH HOH . C 3 HOH A 154 454 163 HOH HOH . C 3 HOH A 155 455 109 HOH HOH . C 3 HOH A 156 456 187 HOH HOH . C 3 HOH A 157 457 108 HOH HOH . C 3 HOH A 158 458 173 HOH HOH . C 3 HOH A 159 459 212 HOH HOH . C 3 HOH A 160 460 105 HOH HOH . C 3 HOH A 161 461 154 HOH HOH . C 3 HOH A 162 462 175 HOH HOH . C 3 HOH A 163 463 179 HOH HOH . C 3 HOH A 164 464 59 HOH HOH . C 3 HOH A 165 465 151 HOH HOH . C 3 HOH A 166 466 209 HOH HOH . C 3 HOH A 167 467 190 HOH HOH . C 3 HOH A 168 468 160 HOH HOH . C 3 HOH A 169 469 111 HOH HOH . C 3 HOH A 170 470 165 HOH HOH . C 3 HOH A 171 471 104 HOH HOH . C 3 HOH A 172 472 197 HOH HOH . C 3 HOH A 173 473 119 HOH HOH . C 3 HOH A 174 474 157 HOH HOH . C 3 HOH A 175 475 206 HOH HOH . C 3 HOH A 176 476 85 HOH HOH . C 3 HOH A 177 477 88 HOH HOH . C 3 HOH A 178 478 127 HOH HOH . C 3 HOH A 179 479 164 HOH HOH . C 3 HOH A 180 480 61 HOH HOH . C 3 HOH A 181 481 203 HOH HOH . C 3 HOH A 182 482 153 HOH HOH . C 3 HOH A 183 483 121 HOH HOH . C 3 HOH A 184 484 178 HOH HOH . C 3 HOH A 185 485 202 HOH HOH . C 3 HOH A 186 486 137 HOH HOH . C 3 HOH A 187 487 78 HOH HOH . C 3 HOH A 188 488 183 HOH HOH . C 3 HOH A 189 489 184 HOH HOH . C 3 HOH A 190 490 77 HOH HOH . C 3 HOH A 191 491 156 HOH HOH . C 3 HOH A 192 492 168 HOH HOH . C 3 HOH A 193 493 146 HOH HOH . C 3 HOH A 194 494 92 HOH HOH . C 3 HOH A 195 495 214 HOH HOH . C 3 HOH A 196 496 193 HOH HOH . C 3 HOH A 197 497 191 HOH HOH . C 3 HOH A 198 498 123 HOH HOH . C 3 HOH A 199 499 213 HOH HOH . C 3 HOH A 200 500 171 HOH HOH . C 3 HOH A 201 501 177 HOH HOH . C 3 HOH A 202 502 89 HOH HOH . C 3 HOH A 203 503 205 HOH HOH . C 3 HOH A 204 504 94 HOH HOH . C 3 HOH A 205 505 210 HOH HOH . C 3 HOH A 206 506 152 HOH HOH . C 3 HOH A 207 507 143 HOH HOH . C 3 HOH A 208 508 132 HOH HOH . C 3 HOH A 209 509 80 HOH HOH . C 3 HOH A 210 510 162 HOH HOH . C 3 HOH A 211 511 200 HOH HOH . C 3 HOH A 212 512 169 HOH HOH . C 3 HOH A 213 513 215 HOH HOH . C 3 HOH A 214 514 159 HOH HOH . C 3 HOH A 215 515 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SZE . . . B 2 -18.374 -6.352 9.31 0.49 23.59 ? N1 SZE 201 A 1 HETATM 2 C C4 SZE . . . B 2 -16.322 -6.24 7.997 0.49 24.99 ? C4 SZE 201 A 1 HETATM 3 C C5 SZE . . . B 2 -19.723 -6.621 9.205 0.49 27.49 ? C5 SZE 201 A 1 HETATM 4 C C6 SZE . . . B 2 -21.411 -7.43 7.865 0.49 23.82 ? C6 SZE 201 A 1 HETATM 5 C C7 SZE . . . B 2 -22.364 -7.22 8.827 0.49 24.4 ? C7 SZE 201 A 1 HETATM 6 C C8 SZE . . . B 2 -21.977 -6.688 10.038 0.49 21.55 ? C8 SZE 201 A 1 HETATM 7 F F SZE . . . B 2 -20.268 -5.869 11.426 0.49 25.84 ? F SZE 201 A 1 HETATM 8 C C9 SZE . . . B 2 -20.652 -6.387 10.242 0.49 24.88 ? C9 SZE 201 A 1 HETATM 9 N N2 SZE . . . B 2 -20.111 -7.15 8.034 0.49 23.25 ? N2 SZE 201 A 1 HETATM 10 C C2 SZE . . . B 2 -17.801 -5.363 10.236 0.49 25.1 ? C2 SZE 201 A 1 HETATM 11 C C1 SZE . . . B 2 -16.293 -5.437 10.33 0.49 17.04 ? C1 SZE 201 A 1 HETATM 12 C C3 SZE . . . B 2 -17.487 -7.084 8.421 0.49 25.55 ? C3 SZE 201 A 1 HETATM 13 O O SZE . . . B 2 -15.983 -6.107 6.807 0.49 26.6 ? O SZE 201 A 1 HETATM 14 N N SZE . . . B 2 -15.703 -5.618 9.011 0.49 20.32 ? N SZE 201 A 1 HETATM 15 C C SZE . . . B 2 -14.363 -5.075 8.812 0.49 24.52 ? C SZE 201 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 59 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 573 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #