data_9F4H # _model_server_result.job_id rdKwG3lV7B9wU5cNniC8TQ _model_server_result.datetime_utc '2024-11-25 10:36:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F4H # _exptl.entry_id 9F4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(propan-2-yl)piperazin-1-yl](thiophen-2-yl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.38 _cell.angle_gamma 90 _cell.entry_id 9F4H _cell.length_a 38.062 _cell.length_b 43.938 _cell.length_c 55.928 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C12 H18 N2 O S' _chem_comp.formula_weight 238.349 _chem_comp.id NUY _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(propan-2-yl)piperazin-1-yl](thiophen-2-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 NUY sing 237 n y C11 C12 NUY doub 238 n y C10 C9 NUY doub 239 n y O1 C8 NUY doub 240 n n C12 S1 NUY sing 241 n y C9 C8 NUY sing 242 n n C9 S1 NUY sing 243 n y C8 N2 NUY sing 244 n n N2 C6 NUY sing 245 n n N2 C5 NUY sing 246 n n C6 C7 NUY sing 247 n n C5 C4 NUY sing 248 n n C7 N1 NUY sing 249 n n C4 N1 NUY sing 250 n n N1 C2 NUY sing 251 n n C2 C1 NUY sing 252 n n C2 C3 NUY sing 253 n n C4 H2 NUY sing 254 n n C4 H3 NUY sing 255 n n C5 H4 NUY sing 256 n n C5 H5 NUY sing 257 n n C6 H6 NUY sing 258 n n C6 H7 NUY sing 259 n n C7 H8 NUY sing 260 n n C7 H9 NUY sing 261 n n C10 H10 NUY sing 262 n n C1 H11 NUY sing 263 n n C1 H12 NUY sing 264 n n C1 H13 NUY sing 265 n n C11 H14 NUY sing 266 n n C12 H15 NUY sing 267 n n C2 H16 NUY sing 268 n n C3 H17 NUY sing 269 n n C3 H18 NUY sing 270 n n C3 H19 NUY sing 271 n n # _atom_sites.entry_id 9F4H _atom_sites.fract_transf_matrix[1][1] 0.026273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002012 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NUY A 1 201 1 NUY LIG . C 2 NUY A 1 202 2 NUY LIG . D 3 HOH A 1 301 112 HOH HOH . D 3 HOH A 2 302 207 HOH HOH . D 3 HOH A 3 303 75 HOH HOH . D 3 HOH A 4 304 16 HOH HOH . D 3 HOH A 5 305 56 HOH HOH . D 3 HOH A 6 306 151 HOH HOH . D 3 HOH A 7 307 164 HOH HOH . D 3 HOH A 8 308 167 HOH HOH . D 3 HOH A 9 309 80 HOH HOH . D 3 HOH A 10 310 205 HOH HOH . D 3 HOH A 11 311 13 HOH HOH . D 3 HOH A 12 312 31 HOH HOH . D 3 HOH A 13 313 3 HOH HOH . D 3 HOH A 14 314 69 HOH HOH . D 3 HOH A 15 315 143 HOH HOH . D 3 HOH A 16 316 53 HOH HOH . D 3 HOH A 17 317 212 HOH HOH . D 3 HOH A 18 318 115 HOH HOH . D 3 HOH A 19 319 206 HOH HOH . D 3 HOH A 20 320 37 HOH HOH . D 3 HOH A 21 321 185 HOH HOH . D 3 HOH A 22 322 76 HOH HOH . D 3 HOH A 23 323 109 HOH HOH . D 3 HOH A 24 324 88 HOH HOH . D 3 HOH A 25 325 110 HOH HOH . D 3 HOH A 26 326 91 HOH HOH . D 3 HOH A 27 327 40 HOH HOH . D 3 HOH A 28 328 41 HOH HOH . D 3 HOH A 29 329 2 HOH HOH . D 3 HOH A 30 330 14 HOH HOH . D 3 HOH A 31 331 95 HOH HOH . D 3 HOH A 32 332 10 HOH HOH . D 3 HOH A 33 333 18 HOH HOH . D 3 HOH A 34 334 162 HOH HOH . D 3 HOH A 35 335 61 HOH HOH . D 3 HOH A 36 336 12 HOH HOH . D 3 HOH A 37 337 142 HOH HOH . D 3 HOH A 38 338 94 HOH HOH . D 3 HOH A 39 339 147 HOH HOH . D 3 HOH A 40 340 118 HOH HOH . D 3 HOH A 41 341 38 HOH HOH . D 3 HOH A 42 342 60 HOH HOH . D 3 HOH A 43 343 8 HOH HOH . D 3 HOH A 44 344 7 HOH HOH . D 3 HOH A 45 345 5 HOH HOH . D 3 HOH A 46 346 28 HOH HOH . D 3 HOH A 47 347 4 HOH HOH . D 3 HOH A 48 348 204 HOH HOH . D 3 HOH A 49 349 25 HOH HOH . D 3 HOH A 50 350 184 HOH HOH . D 3 HOH A 51 351 122 HOH HOH . D 3 HOH A 52 352 6 HOH HOH . D 3 HOH A 53 353 63 HOH HOH . D 3 HOH A 54 354 67 HOH HOH . D 3 HOH A 55 355 50 HOH HOH . D 3 HOH A 56 356 9 HOH HOH . D 3 HOH A 57 357 182 HOH HOH . D 3 HOH A 58 358 137 HOH HOH . D 3 HOH A 59 359 48 HOH HOH . D 3 HOH A 60 360 117 HOH HOH . D 3 HOH A 61 361 54 HOH HOH . D 3 HOH A 62 362 96 HOH HOH . D 3 HOH A 63 363 35 HOH HOH . D 3 HOH A 64 364 90 HOH HOH . D 3 HOH A 65 365 93 HOH HOH . D 3 HOH A 66 366 196 HOH HOH . D 3 HOH A 67 367 73 HOH HOH . D 3 HOH A 68 368 92 HOH HOH . D 3 HOH A 69 369 51 HOH HOH . D 3 HOH A 70 370 127 HOH HOH . D 3 HOH A 71 371 47 HOH HOH . D 3 HOH A 72 372 19 HOH HOH . D 3 HOH A 73 373 72 HOH HOH . D 3 HOH A 74 374 33 HOH HOH . D 3 HOH A 75 375 101 HOH HOH . D 3 HOH A 76 376 1 HOH HOH . D 3 HOH A 77 377 32 HOH HOH . D 3 HOH A 78 378 36 HOH HOH . D 3 HOH A 79 379 152 HOH HOH . D 3 HOH A 80 380 24 HOH HOH . D 3 HOH A 81 381 22 HOH HOH . D 3 HOH A 82 382 30 HOH HOH . D 3 HOH A 83 383 153 HOH HOH . D 3 HOH A 84 384 183 HOH HOH . D 3 HOH A 85 385 86 HOH HOH . D 3 HOH A 86 386 71 HOH HOH . D 3 HOH A 87 387 66 HOH HOH . D 3 HOH A 88 388 23 HOH HOH . D 3 HOH A 89 389 129 HOH HOH . D 3 HOH A 90 390 15 HOH HOH . D 3 HOH A 91 391 155 HOH HOH . D 3 HOH A 92 392 166 HOH HOH . D 3 HOH A 93 393 27 HOH HOH . D 3 HOH A 94 394 173 HOH HOH . D 3 HOH A 95 395 58 HOH HOH . D 3 HOH A 96 396 34 HOH HOH . D 3 HOH A 97 397 55 HOH HOH . D 3 HOH A 98 398 106 HOH HOH . D 3 HOH A 99 399 26 HOH HOH . D 3 HOH A 100 400 81 HOH HOH . D 3 HOH A 101 401 29 HOH HOH . D 3 HOH A 102 402 79 HOH HOH . D 3 HOH A 103 403 177 HOH HOH . D 3 HOH A 104 404 209 HOH HOH . D 3 HOH A 105 405 57 HOH HOH . D 3 HOH A 106 406 42 HOH HOH . D 3 HOH A 107 407 100 HOH HOH . D 3 HOH A 108 408 187 HOH HOH . D 3 HOH A 109 409 39 HOH HOH . D 3 HOH A 110 410 116 HOH HOH . D 3 HOH A 111 411 44 HOH HOH . D 3 HOH A 112 412 158 HOH HOH . D 3 HOH A 113 413 104 HOH HOH . D 3 HOH A 114 414 195 HOH HOH . D 3 HOH A 115 415 49 HOH HOH . D 3 HOH A 116 416 62 HOH HOH . D 3 HOH A 117 417 168 HOH HOH . D 3 HOH A 118 418 45 HOH HOH . D 3 HOH A 119 419 17 HOH HOH . D 3 HOH A 120 420 157 HOH HOH . D 3 HOH A 121 421 131 HOH HOH . D 3 HOH A 122 422 68 HOH HOH . D 3 HOH A 123 423 43 HOH HOH . D 3 HOH A 124 424 105 HOH HOH . D 3 HOH A 125 425 74 HOH HOH . D 3 HOH A 126 426 202 HOH HOH . D 3 HOH A 127 427 46 HOH HOH . D 3 HOH A 128 428 180 HOH HOH . D 3 HOH A 129 429 59 HOH HOH . D 3 HOH A 130 430 107 HOH HOH . D 3 HOH A 131 431 210 HOH HOH . D 3 HOH A 132 432 21 HOH HOH . D 3 HOH A 133 433 87 HOH HOH . D 3 HOH A 134 434 138 HOH HOH . D 3 HOH A 135 435 70 HOH HOH . D 3 HOH A 136 436 145 HOH HOH . D 3 HOH A 137 437 148 HOH HOH . D 3 HOH A 138 438 192 HOH HOH . D 3 HOH A 139 439 169 HOH HOH . D 3 HOH A 140 440 97 HOH HOH . D 3 HOH A 141 441 52 HOH HOH . D 3 HOH A 142 442 11 HOH HOH . D 3 HOH A 143 443 124 HOH HOH . D 3 HOH A 144 444 103 HOH HOH . D 3 HOH A 145 445 85 HOH HOH . D 3 HOH A 146 446 200 HOH HOH . D 3 HOH A 147 447 64 HOH HOH . D 3 HOH A 148 448 188 HOH HOH . D 3 HOH A 149 449 163 HOH HOH . D 3 HOH A 150 450 190 HOH HOH . D 3 HOH A 151 451 126 HOH HOH . D 3 HOH A 152 452 139 HOH HOH . D 3 HOH A 153 453 82 HOH HOH . D 3 HOH A 154 454 111 HOH HOH . D 3 HOH A 155 455 161 HOH HOH . D 3 HOH A 156 456 121 HOH HOH . D 3 HOH A 157 457 208 HOH HOH . D 3 HOH A 158 458 160 HOH HOH . D 3 HOH A 159 459 65 HOH HOH . D 3 HOH A 160 460 194 HOH HOH . D 3 HOH A 161 461 123 HOH HOH . D 3 HOH A 162 462 174 HOH HOH . D 3 HOH A 163 463 144 HOH HOH . D 3 HOH A 164 464 98 HOH HOH . D 3 HOH A 165 465 114 HOH HOH . D 3 HOH A 166 466 125 HOH HOH . D 3 HOH A 167 467 136 HOH HOH . D 3 HOH A 168 468 186 HOH HOH . D 3 HOH A 169 469 78 HOH HOH . D 3 HOH A 170 470 181 HOH HOH . D 3 HOH A 171 471 189 HOH HOH . D 3 HOH A 172 472 134 HOH HOH . D 3 HOH A 173 473 141 HOH HOH . D 3 HOH A 174 474 128 HOH HOH . D 3 HOH A 175 475 99 HOH HOH . D 3 HOH A 176 476 20 HOH HOH . D 3 HOH A 177 477 201 HOH HOH . D 3 HOH A 178 478 77 HOH HOH . D 3 HOH A 179 479 193 HOH HOH . D 3 HOH A 180 480 178 HOH HOH . D 3 HOH A 181 481 146 HOH HOH . D 3 HOH A 182 482 197 HOH HOH . D 3 HOH A 183 483 120 HOH HOH . D 3 HOH A 184 484 150 HOH HOH . D 3 HOH A 185 485 102 HOH HOH . D 3 HOH A 186 486 191 HOH HOH . D 3 HOH A 187 487 165 HOH HOH . D 3 HOH A 188 488 156 HOH HOH . D 3 HOH A 189 489 140 HOH HOH . D 3 HOH A 190 490 198 HOH HOH . D 3 HOH A 191 491 175 HOH HOH . D 3 HOH A 192 492 83 HOH HOH . D 3 HOH A 193 493 130 HOH HOH . D 3 HOH A 194 494 149 HOH HOH . D 3 HOH A 195 495 119 HOH HOH . D 3 HOH A 196 496 170 HOH HOH . D 3 HOH A 197 497 154 HOH HOH . D 3 HOH A 198 498 132 HOH HOH . D 3 HOH A 199 499 211 HOH HOH . D 3 HOH A 200 500 84 HOH HOH . D 3 HOH A 201 501 89 HOH HOH . D 3 HOH A 202 502 135 HOH HOH . D 3 HOH A 203 503 179 HOH HOH . D 3 HOH A 204 504 108 HOH HOH . D 3 HOH A 205 505 176 HOH HOH . D 3 HOH A 206 506 172 HOH HOH . D 3 HOH A 207 507 159 HOH HOH . D 3 HOH A 208 508 113 HOH HOH . D 3 HOH A 209 509 133 HOH HOH . D 3 HOH A 210 510 171 HOH HOH . D 3 HOH A 211 511 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NUY . . . B 2 -22.164 -8.71 8.689 0.54 27.25 ? N1 NUY 201 A 1 HETATM 2 C C4 NUY . . . B 2 -22.115 -8.324 10.098 0.54 29.34 ? C4 NUY 201 A 1 HETATM 3 C C5 NUY . . . B 2 -21.185 -7.154 10.335 0.54 31.99 ? C5 NUY 201 A 1 HETATM 4 C C6 NUY . . . B 2 -19.796 -8.116 8.578 0.54 27.33 ? C6 NUY 201 A 1 HETATM 5 C C7 NUY . . . B 2 -21.153 -7.981 7.929 0.54 27.3 ? C7 NUY 201 A 1 HETATM 6 C C8 NUY . . . B 2 -18.746 -7.209 10.648 0.54 29.91 ? C8 NUY 201 A 1 HETATM 7 C C10 NUY . . . B 2 -16.786 -7.108 9.061 0.54 26.31 ? C10 NUY 201 A 1 HETATM 8 C C1 NUY . . . B 2 -24.621 -8.971 9.046 0.54 25.4 ? C1 NUY 201 A 1 HETATM 9 C C11 NUY . . . B 2 -15.697 -6.241 8.806 0.54 24.2 ? C11 NUY 201 A 1 HETATM 10 C C12 NUY . . . B 2 -15.727 -5.12 9.546 0.54 18.27 ? C12 NUY 201 A 1 HETATM 11 C C2 NUY . . . B 2 -23.514 -8.541 8.104 0.54 22.78 ? C2 NUY 201 A 1 HETATM 12 C C3 NUY . . . B 2 -23.635 -9.188 6.741 0.54 21.29 ? C3 NUY 201 A 1 HETATM 13 C C9 NUY . . . B 2 -17.634 -6.582 10.015 0.54 23.85 ? C9 NUY 201 A 1 HETATM 14 N N2 NUY . . . B 2 -19.829 -7.487 9.898 0.54 28.79 ? N2 NUY 201 A 1 HETATM 15 O O1 NUY . . . B 2 -18.702 -7.44 11.853 0.54 27.48 ? O1 NUY 201 A 1 HETATM 16 S S1 NUY . . . B 2 -17.17 -4.977 10.428 0.54 23.96 ? S1 NUY 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #