data_9F4O # _model_server_result.job_id 6Exz_JHe_olvlq7hQnvHQg _model_server_result.datetime_utc '2024-10-10 06:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F4O # _exptl.entry_id 9F4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 191.273 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-3-methyl-1-(6-methylpyridin-2-yl)piperazine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.64 _cell.angle_gamma 90 _cell.entry_id 9F4O _cell.length_a 37.864 _cell.length_b 43.968 _cell.length_c 56.083 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N3' _chem_comp.formula_weight 191.273 _chem_comp.id A1H95 _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-3-methyl-1-(6-methylpyridin-2-yl)piperazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1H95 sing 1 n n C2 C3 A1H95 sing 2 n n C3 N1 A1H95 sing 3 n n N1 C4 A1H95 sing 4 n n C4 C5 A1H95 sing 5 n n C5 N2 A1H95 sing 6 n n N1 C6 A1H95 sing 7 n n C6 C7 A1H95 doub 8 n y C7 C8 A1H95 sing 9 n y C8 C9 A1H95 doub 10 n y C9 C10 A1H95 sing 11 n y C10 C11 A1H95 sing 12 n n C10 N3 A1H95 doub 13 n y C2 N2 A1H95 sing 14 n n C6 N3 A1H95 sing 15 n y C4 H7 A1H95 sing 16 n n C4 H8 A1H95 sing 17 n n C5 H9 A1H95 sing 18 n n C5 H10 A1H95 sing 19 n n C7 H12 A1H95 sing 20 n n C8 H13 A1H95 sing 21 n n C1 H1 A1H95 sing 22 n n C1 H3 A1H95 sing 23 n n C1 H2 A1H95 sing 24 n n C11 H15 A1H95 sing 25 n n C11 H17 A1H95 sing 26 n n C11 H16 A1H95 sing 27 n n C2 H4 A1H95 sing 28 n n C3 H5 A1H95 sing 29 n n C3 H6 A1H95 sing 30 n n C9 H14 A1H95 sing 31 n n N2 H18 A1H95 sing 32 n n # _atom_sites.entry_id 9F4O _atom_sites.fract_transf_matrix[1][1] 0.02641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H95 A 1 201 1 A1H95 LIG . C 3 HOH A 1 301 137 HOH HOH . C 3 HOH A 2 302 203 HOH HOH . C 3 HOH A 3 303 72 HOH HOH . C 3 HOH A 4 304 201 HOH HOH . C 3 HOH A 5 305 206 HOH HOH . C 3 HOH A 6 306 24 HOH HOH . C 3 HOH A 7 307 215 HOH HOH . C 3 HOH A 8 308 224 HOH HOH . C 3 HOH A 9 309 179 HOH HOH . C 3 HOH A 10 310 166 HOH HOH . C 3 HOH A 11 311 94 HOH HOH . C 3 HOH A 12 312 46 HOH HOH . C 3 HOH A 13 313 111 HOH HOH . C 3 HOH A 14 314 97 HOH HOH . C 3 HOH A 15 315 65 HOH HOH . C 3 HOH A 16 316 114 HOH HOH . C 3 HOH A 17 317 129 HOH HOH . C 3 HOH A 18 318 232 HOH HOH . C 3 HOH A 19 319 69 HOH HOH . C 3 HOH A 20 320 159 HOH HOH . C 3 HOH A 21 321 106 HOH HOH . C 3 HOH A 22 322 117 HOH HOH . C 3 HOH A 23 323 38 HOH HOH . C 3 HOH A 24 324 110 HOH HOH . C 3 HOH A 25 325 120 HOH HOH . C 3 HOH A 26 326 59 HOH HOH . C 3 HOH A 27 327 133 HOH HOH . C 3 HOH A 28 328 150 HOH HOH . C 3 HOH A 29 329 71 HOH HOH . C 3 HOH A 30 330 143 HOH HOH . C 3 HOH A 31 331 55 HOH HOH . C 3 HOH A 32 332 1 HOH HOH . C 3 HOH A 33 333 115 HOH HOH . C 3 HOH A 34 334 123 HOH HOH . C 3 HOH A 35 335 198 HOH HOH . C 3 HOH A 36 336 3 HOH HOH . C 3 HOH A 37 337 5 HOH HOH . C 3 HOH A 38 338 84 HOH HOH . C 3 HOH A 39 339 149 HOH HOH . C 3 HOH A 40 340 35 HOH HOH . C 3 HOH A 41 341 83 HOH HOH . C 3 HOH A 42 342 142 HOH HOH . C 3 HOH A 43 343 70 HOH HOH . C 3 HOH A 44 344 67 HOH HOH . C 3 HOH A 45 345 4 HOH HOH . C 3 HOH A 46 346 205 HOH HOH . C 3 HOH A 47 347 31 HOH HOH . C 3 HOH A 48 348 53 HOH HOH . C 3 HOH A 49 349 140 HOH HOH . C 3 HOH A 50 350 236 HOH HOH . C 3 HOH A 51 351 8 HOH HOH . C 3 HOH A 52 352 147 HOH HOH . C 3 HOH A 53 353 40 HOH HOH . C 3 HOH A 54 354 181 HOH HOH . C 3 HOH A 55 355 20 HOH HOH . C 3 HOH A 56 356 50 HOH HOH . C 3 HOH A 57 357 60 HOH HOH . C 3 HOH A 58 358 9 HOH HOH . C 3 HOH A 59 359 127 HOH HOH . C 3 HOH A 60 360 6 HOH HOH . C 3 HOH A 61 361 32 HOH HOH . C 3 HOH A 62 362 187 HOH HOH . C 3 HOH A 63 363 29 HOH HOH . C 3 HOH A 64 364 168 HOH HOH . C 3 HOH A 65 365 7 HOH HOH . C 3 HOH A 66 366 21 HOH HOH . C 3 HOH A 67 367 141 HOH HOH . C 3 HOH A 68 368 66 HOH HOH . C 3 HOH A 69 369 61 HOH HOH . C 3 HOH A 70 370 76 HOH HOH . C 3 HOH A 71 371 88 HOH HOH . C 3 HOH A 72 372 37 HOH HOH . C 3 HOH A 73 373 15 HOH HOH . C 3 HOH A 74 374 11 HOH HOH . C 3 HOH A 75 375 27 HOH HOH . C 3 HOH A 76 376 134 HOH HOH . C 3 HOH A 77 377 45 HOH HOH . C 3 HOH A 78 378 105 HOH HOH . C 3 HOH A 79 379 34 HOH HOH . C 3 HOH A 80 380 47 HOH HOH . C 3 HOH A 81 381 42 HOH HOH . C 3 HOH A 82 382 247 HOH HOH . C 3 HOH A 83 383 128 HOH HOH . C 3 HOH A 84 384 246 HOH HOH . C 3 HOH A 85 385 33 HOH HOH . C 3 HOH A 86 386 52 HOH HOH . C 3 HOH A 87 387 138 HOH HOH . C 3 HOH A 88 388 17 HOH HOH . C 3 HOH A 89 389 209 HOH HOH . C 3 HOH A 90 390 82 HOH HOH . C 3 HOH A 91 391 113 HOH HOH . C 3 HOH A 92 392 130 HOH HOH . C 3 HOH A 93 393 18 HOH HOH . C 3 HOH A 94 394 12 HOH HOH . C 3 HOH A 95 395 14 HOH HOH . C 3 HOH A 96 396 74 HOH HOH . C 3 HOH A 97 397 2 HOH HOH . C 3 HOH A 98 398 239 HOH HOH . C 3 HOH A 99 399 10 HOH HOH . C 3 HOH A 100 400 43 HOH HOH . C 3 HOH A 101 401 167 HOH HOH . C 3 HOH A 102 402 23 HOH HOH . C 3 HOH A 103 403 39 HOH HOH . C 3 HOH A 104 404 78 HOH HOH . C 3 HOH A 105 405 104 HOH HOH . C 3 HOH A 106 406 41 HOH HOH . C 3 HOH A 107 407 64 HOH HOH . C 3 HOH A 108 408 30 HOH HOH . C 3 HOH A 109 409 25 HOH HOH . C 3 HOH A 110 410 99 HOH HOH . C 3 HOH A 111 411 36 HOH HOH . C 3 HOH A 112 412 77 HOH HOH . C 3 HOH A 113 413 156 HOH HOH . C 3 HOH A 114 414 28 HOH HOH . C 3 HOH A 115 415 80 HOH HOH . C 3 HOH A 116 416 160 HOH HOH . C 3 HOH A 117 417 44 HOH HOH . C 3 HOH A 118 418 202 HOH HOH . C 3 HOH A 119 419 22 HOH HOH . C 3 HOH A 120 420 48 HOH HOH . C 3 HOH A 121 421 81 HOH HOH . C 3 HOH A 122 422 216 HOH HOH . C 3 HOH A 123 423 16 HOH HOH . C 3 HOH A 124 424 87 HOH HOH . C 3 HOH A 125 425 119 HOH HOH . C 3 HOH A 126 426 19 HOH HOH . C 3 HOH A 127 427 13 HOH HOH . C 3 HOH A 128 428 98 HOH HOH . C 3 HOH A 129 429 49 HOH HOH . C 3 HOH A 130 430 92 HOH HOH . C 3 HOH A 131 431 231 HOH HOH . C 3 HOH A 132 432 89 HOH HOH . C 3 HOH A 133 433 93 HOH HOH . C 3 HOH A 134 434 63 HOH HOH . C 3 HOH A 135 435 223 HOH HOH . C 3 HOH A 136 436 228 HOH HOH . C 3 HOH A 137 437 96 HOH HOH . C 3 HOH A 138 438 222 HOH HOH . C 3 HOH A 139 439 197 HOH HOH . C 3 HOH A 140 440 158 HOH HOH . C 3 HOH A 141 441 157 HOH HOH . C 3 HOH A 142 442 54 HOH HOH . C 3 HOH A 143 443 57 HOH HOH . C 3 HOH A 144 444 26 HOH HOH . C 3 HOH A 145 445 86 HOH HOH . C 3 HOH A 146 446 109 HOH HOH . C 3 HOH A 147 447 145 HOH HOH . C 3 HOH A 148 448 163 HOH HOH . C 3 HOH A 149 449 126 HOH HOH . C 3 HOH A 150 450 73 HOH HOH . C 3 HOH A 151 451 139 HOH HOH . C 3 HOH A 152 452 68 HOH HOH . C 3 HOH A 153 453 75 HOH HOH . C 3 HOH A 154 454 58 HOH HOH . C 3 HOH A 155 455 251 HOH HOH . C 3 HOH A 156 456 193 HOH HOH . C 3 HOH A 157 457 132 HOH HOH . C 3 HOH A 158 458 112 HOH HOH . C 3 HOH A 159 459 116 HOH HOH . C 3 HOH A 160 460 195 HOH HOH . C 3 HOH A 161 461 253 HOH HOH . C 3 HOH A 162 462 252 HOH HOH . C 3 HOH A 163 463 219 HOH HOH . C 3 HOH A 164 464 173 HOH HOH . C 3 HOH A 165 465 122 HOH HOH . C 3 HOH A 166 466 183 HOH HOH . C 3 HOH A 167 467 118 HOH HOH . C 3 HOH A 168 468 100 HOH HOH . C 3 HOH A 169 469 218 HOH HOH . C 3 HOH A 170 470 91 HOH HOH . C 3 HOH A 171 471 235 HOH HOH . C 3 HOH A 172 472 186 HOH HOH . C 3 HOH A 173 473 144 HOH HOH . C 3 HOH A 174 474 175 HOH HOH . C 3 HOH A 175 475 248 HOH HOH . C 3 HOH A 176 476 230 HOH HOH . C 3 HOH A 177 477 62 HOH HOH . C 3 HOH A 178 478 241 HOH HOH . C 3 HOH A 179 479 243 HOH HOH . C 3 HOH A 180 480 254 HOH HOH . C 3 HOH A 181 481 169 HOH HOH . C 3 HOH A 182 482 200 HOH HOH . C 3 HOH A 183 483 178 HOH HOH . C 3 HOH A 184 484 102 HOH HOH . C 3 HOH A 185 485 171 HOH HOH . C 3 HOH A 186 486 152 HOH HOH . C 3 HOH A 187 487 229 HOH HOH . C 3 HOH A 188 488 170 HOH HOH . C 3 HOH A 189 489 177 HOH HOH . C 3 HOH A 190 490 204 HOH HOH . C 3 HOH A 191 491 125 HOH HOH . C 3 HOH A 192 492 234 HOH HOH . C 3 HOH A 193 493 124 HOH HOH . C 3 HOH A 194 494 56 HOH HOH . C 3 HOH A 195 495 245 HOH HOH . C 3 HOH A 196 496 226 HOH HOH . C 3 HOH A 197 497 136 HOH HOH . C 3 HOH A 198 498 103 HOH HOH . C 3 HOH A 199 499 249 HOH HOH . C 3 HOH A 200 500 51 HOH HOH . C 3 HOH A 201 501 213 HOH HOH . C 3 HOH A 202 502 244 HOH HOH . C 3 HOH A 203 503 212 HOH HOH . C 3 HOH A 204 504 108 HOH HOH . C 3 HOH A 205 505 176 HOH HOH . C 3 HOH A 206 506 85 HOH HOH . C 3 HOH A 207 507 165 HOH HOH . C 3 HOH A 208 508 225 HOH HOH . C 3 HOH A 209 509 121 HOH HOH . C 3 HOH A 210 510 207 HOH HOH . C 3 HOH A 211 511 95 HOH HOH . C 3 HOH A 212 512 153 HOH HOH . C 3 HOH A 213 513 199 HOH HOH . C 3 HOH A 214 514 184 HOH HOH . C 3 HOH A 215 515 208 HOH HOH . C 3 HOH A 216 516 146 HOH HOH . C 3 HOH A 217 517 182 HOH HOH . C 3 HOH A 218 518 217 HOH HOH . C 3 HOH A 219 519 196 HOH HOH . C 3 HOH A 220 520 180 HOH HOH . C 3 HOH A 221 521 210 HOH HOH . C 3 HOH A 222 522 79 HOH HOH . C 3 HOH A 223 523 185 HOH HOH . C 3 HOH A 224 524 148 HOH HOH . C 3 HOH A 225 525 161 HOH HOH . C 3 HOH A 226 526 154 HOH HOH . C 3 HOH A 227 527 242 HOH HOH . C 3 HOH A 228 528 189 HOH HOH . C 3 HOH A 229 529 174 HOH HOH . C 3 HOH A 230 530 192 HOH HOH . C 3 HOH A 231 531 221 HOH HOH . C 3 HOH A 232 532 90 HOH HOH . C 3 HOH A 233 533 220 HOH HOH . C 3 HOH A 234 534 250 HOH HOH . C 3 HOH A 235 535 151 HOH HOH . C 3 HOH A 236 536 214 HOH HOH . C 3 HOH A 237 537 188 HOH HOH . C 3 HOH A 238 538 155 HOH HOH . C 3 HOH A 239 539 107 HOH HOH . C 3 HOH A 240 540 101 HOH HOH . C 3 HOH A 241 541 211 HOH HOH . C 3 HOH A 242 542 164 HOH HOH . C 3 HOH A 243 543 162 HOH HOH . C 3 HOH A 244 544 190 HOH HOH . C 3 HOH A 245 545 172 HOH HOH . C 3 HOH A 246 546 131 HOH HOH . C 3 HOH A 247 547 135 HOH HOH . C 3 HOH A 248 548 191 HOH HOH . C 3 HOH A 249 549 194 HOH HOH . C 3 HOH A 250 550 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1H95 . . . B 2 -17.971 -6.872 8.633 0.83 17.03 ? N1 A1H95 201 A 1 HETATM 2 N N3 A1H95 . . . B 2 -16.689 -6.263 6.828 0.83 12.26 ? N3 A1H95 201 A 1 HETATM 3 C C4 A1H95 . . . B 2 -18.337 -6.878 10.043 0.83 18.34 ? C4 A1H95 201 A 1 HETATM 4 C C5 A1H95 . . . B 2 -19.748 -6.354 10.217 0.83 24.42 ? C5 A1H95 201 A 1 HETATM 5 C C6 A1H95 . . . B 2 -16.869 -6.229 8.151 0.83 11.45 ? C6 A1H95 201 A 1 HETATM 6 C C7 A1H95 . . . B 2 -15.974 -5.562 9 0.83 11.16 ? C7 A1H95 201 A 1 HETATM 7 C C8 A1H95 . . . B 2 -14.886 -4.935 8.437 0.83 12.84 ? C8 A1H95 201 A 1 HETATM 8 C C10 A1H95 . . . B 2 -15.626 -5.65 6.291 0.83 10.11 ? C10 A1H95 201 A 1 HETATM 9 C C1 A1H95 . . . B 2 -21.321 -7.873 7.135 0.83 24.66 ? C1 A1H95 201 A 1 HETATM 10 C C11 A1H95 . . . B 2 -15.488 -5.727 4.799 0.83 12.35 ? C11 A1H95 201 A 1 HETATM 11 C C2 A1H95 . . . B 2 -20.322 -7.06 7.946 0.83 22.07 ? C2 A1H95 201 A 1 HETATM 12 C C3 A1H95 . . . B 2 -18.904 -7.617 7.787 0.83 20.4 ? C3 A1H95 201 A 1 HETATM 13 C C9 A1H95 . . . B 2 -14.707 -4.975 7.07 0.83 12.82 ? C9 A1H95 201 A 1 HETATM 14 N N2 A1H95 . . . B 2 -20.685 -7.098 9.372 0.83 25.7 ? N2 A1H95 201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #