data_9F4U # _model_server_result.job_id d0meUW_W8e5u05SD3vtt7g _model_server_result.datetime_utc '2024-10-11 02:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F4U # _exptl.entry_id 9F4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.24 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-2-methoxy-ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.14 _cell.angle_gamma 90 _cell.entry_id 9F4U _cell.length_a 38.029 _cell.length_b 43.907 _cell.length_c 56.007 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N3 O2' _chem_comp.formula_weight 219.24 _chem_comp.id LXA _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(1~{H}-benzimidazol-2-ylmethyl)-2-methoxy-ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O LXA sing 194 n n O C1 LXA sing 195 n n C1 C2 LXA sing 196 n n C9 C8 LXA doub 197 n y C9 C10 LXA sing 198 n y O1 C2 LXA doub 199 n n C8 C7 LXA sing 200 n y C2 N LXA sing 201 n n C10 N2 LXA sing 202 n y C10 C5 LXA doub 203 n y N2 C4 LXA doub 204 n y C7 C6 LXA doub 205 n y N C3 LXA sing 206 n n C5 C6 LXA sing 207 n y C5 N1 LXA sing 208 n y C4 C3 LXA sing 209 n n C4 N1 LXA sing 210 n y N1 H1 LXA sing 211 n n C6 H2 LXA sing 212 n n C7 H3 LXA sing 213 n n C8 H4 LXA sing 214 n n N H5 LXA sing 215 n n C H6 LXA sing 216 n n C H7 LXA sing 217 n n C H8 LXA sing 218 n n C1 H9 LXA sing 219 n n C1 H10 LXA sing 220 n n C3 H11 LXA sing 221 n n C3 H12 LXA sing 222 n n C9 H13 LXA sing 223 n n # _atom_sites.entry_id 9F4U _atom_sites.fract_transf_matrix[1][1] 0.026296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001903 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LXA A 1 201 1 LXA LIG . C 3 HOH A 1 301 184 HOH HOH . C 3 HOH A 2 302 159 HOH HOH . C 3 HOH A 3 303 150 HOH HOH . C 3 HOH A 4 304 107 HOH HOH . C 3 HOH A 5 305 229 HOH HOH . C 3 HOH A 6 306 149 HOH HOH . C 3 HOH A 7 307 218 HOH HOH . C 3 HOH A 8 308 73 HOH HOH . C 3 HOH A 9 309 124 HOH HOH . C 3 HOH A 10 310 16 HOH HOH . C 3 HOH A 11 311 121 HOH HOH . C 3 HOH A 12 312 103 HOH HOH . C 3 HOH A 13 313 141 HOH HOH . C 3 HOH A 14 314 38 HOH HOH . C 3 HOH A 15 315 122 HOH HOH . C 3 HOH A 16 316 135 HOH HOH . C 3 HOH A 17 317 81 HOH HOH . C 3 HOH A 18 318 91 HOH HOH . C 3 HOH A 19 319 71 HOH HOH . C 3 HOH A 20 320 90 HOH HOH . C 3 HOH A 21 321 216 HOH HOH . C 3 HOH A 22 322 60 HOH HOH . C 3 HOH A 23 323 75 HOH HOH . C 3 HOH A 24 324 2 HOH HOH . C 3 HOH A 25 325 215 HOH HOH . C 3 HOH A 26 326 89 HOH HOH . C 3 HOH A 27 327 36 HOH HOH . C 3 HOH A 28 328 17 HOH HOH . C 3 HOH A 29 329 225 HOH HOH . C 3 HOH A 30 330 29 HOH HOH . C 3 HOH A 31 331 12 HOH HOH . C 3 HOH A 32 332 130 HOH HOH . C 3 HOH A 33 333 132 HOH HOH . C 3 HOH A 34 334 53 HOH HOH . C 3 HOH A 35 335 37 HOH HOH . C 3 HOH A 36 336 83 HOH HOH . C 3 HOH A 37 337 80 HOH HOH . C 3 HOH A 38 338 239 HOH HOH . C 3 HOH A 39 339 19 HOH HOH . C 3 HOH A 40 340 206 HOH HOH . C 3 HOH A 41 341 31 HOH HOH . C 3 HOH A 42 342 3 HOH HOH . C 3 HOH A 43 343 108 HOH HOH . C 3 HOH A 44 344 8 HOH HOH . C 3 HOH A 45 345 161 HOH HOH . C 3 HOH A 46 346 20 HOH HOH . C 3 HOH A 47 347 65 HOH HOH . C 3 HOH A 48 348 9 HOH HOH . C 3 HOH A 49 349 5 HOH HOH . C 3 HOH A 50 350 74 HOH HOH . C 3 HOH A 51 351 56 HOH HOH . C 3 HOH A 52 352 95 HOH HOH . C 3 HOH A 53 353 4 HOH HOH . C 3 HOH A 54 354 7 HOH HOH . C 3 HOH A 55 355 168 HOH HOH . C 3 HOH A 56 356 87 HOH HOH . C 3 HOH A 57 357 235 HOH HOH . C 3 HOH A 58 358 34 HOH HOH . C 3 HOH A 59 359 18 HOH HOH . C 3 HOH A 60 360 46 HOH HOH . C 3 HOH A 61 361 22 HOH HOH . C 3 HOH A 62 362 6 HOH HOH . C 3 HOH A 63 363 190 HOH HOH . C 3 HOH A 64 364 86 HOH HOH . C 3 HOH A 65 365 44 HOH HOH . C 3 HOH A 66 366 15 HOH HOH . C 3 HOH A 67 367 106 HOH HOH . C 3 HOH A 68 368 211 HOH HOH . C 3 HOH A 69 369 11 HOH HOH . C 3 HOH A 70 370 30 HOH HOH . C 3 HOH A 71 371 195 HOH HOH . C 3 HOH A 72 372 10 HOH HOH . C 3 HOH A 73 373 127 HOH HOH . C 3 HOH A 74 374 54 HOH HOH . C 3 HOH A 75 375 109 HOH HOH . C 3 HOH A 76 376 70 HOH HOH . C 3 HOH A 77 377 123 HOH HOH . C 3 HOH A 78 378 177 HOH HOH . C 3 HOH A 79 379 24 HOH HOH . C 3 HOH A 80 380 148 HOH HOH . C 3 HOH A 81 381 47 HOH HOH . C 3 HOH A 82 382 35 HOH HOH . C 3 HOH A 83 383 50 HOH HOH . C 3 HOH A 84 384 1 HOH HOH . C 3 HOH A 85 385 100 HOH HOH . C 3 HOH A 86 386 49 HOH HOH . C 3 HOH A 87 387 42 HOH HOH . C 3 HOH A 88 388 33 HOH HOH . C 3 HOH A 89 389 82 HOH HOH . C 3 HOH A 90 390 133 HOH HOH . C 3 HOH A 91 391 26 HOH HOH . C 3 HOH A 92 392 39 HOH HOH . C 3 HOH A 93 393 94 HOH HOH . C 3 HOH A 94 394 93 HOH HOH . C 3 HOH A 95 395 14 HOH HOH . C 3 HOH A 96 396 21 HOH HOH . C 3 HOH A 97 397 202 HOH HOH . C 3 HOH A 98 398 62 HOH HOH . C 3 HOH A 99 399 28 HOH HOH . C 3 HOH A 100 400 208 HOH HOH . C 3 HOH A 101 401 128 HOH HOH . C 3 HOH A 102 402 178 HOH HOH . C 3 HOH A 103 403 41 HOH HOH . C 3 HOH A 104 404 200 HOH HOH . C 3 HOH A 105 405 63 HOH HOH . C 3 HOH A 106 406 43 HOH HOH . C 3 HOH A 107 407 79 HOH HOH . C 3 HOH A 108 408 152 HOH HOH . C 3 HOH A 109 409 58 HOH HOH . C 3 HOH A 110 410 69 HOH HOH . C 3 HOH A 111 411 61 HOH HOH . C 3 HOH A 112 412 120 HOH HOH . C 3 HOH A 113 413 57 HOH HOH . C 3 HOH A 114 414 92 HOH HOH . C 3 HOH A 115 415 25 HOH HOH . C 3 HOH A 116 416 13 HOH HOH . C 3 HOH A 117 417 85 HOH HOH . C 3 HOH A 118 418 134 HOH HOH . C 3 HOH A 119 419 32 HOH HOH . C 3 HOH A 120 420 99 HOH HOH . C 3 HOH A 121 421 203 HOH HOH . C 3 HOH A 122 422 101 HOH HOH . C 3 HOH A 123 423 78 HOH HOH . C 3 HOH A 124 424 67 HOH HOH . C 3 HOH A 125 425 64 HOH HOH . C 3 HOH A 126 426 113 HOH HOH . C 3 HOH A 127 427 105 HOH HOH . C 3 HOH A 128 428 154 HOH HOH . C 3 HOH A 129 429 45 HOH HOH . C 3 HOH A 130 430 170 HOH HOH . C 3 HOH A 131 431 40 HOH HOH . C 3 HOH A 132 432 84 HOH HOH . C 3 HOH A 133 433 72 HOH HOH . C 3 HOH A 134 434 165 HOH HOH . C 3 HOH A 135 435 143 HOH HOH . C 3 HOH A 136 436 125 HOH HOH . C 3 HOH A 137 437 48 HOH HOH . C 3 HOH A 138 438 156 HOH HOH . C 3 HOH A 139 439 77 HOH HOH . C 3 HOH A 140 440 76 HOH HOH . C 3 HOH A 141 441 163 HOH HOH . C 3 HOH A 142 442 110 HOH HOH . C 3 HOH A 143 443 146 HOH HOH . C 3 HOH A 144 444 51 HOH HOH . C 3 HOH A 145 445 111 HOH HOH . C 3 HOH A 146 446 173 HOH HOH . C 3 HOH A 147 447 137 HOH HOH . C 3 HOH A 148 448 205 HOH HOH . C 3 HOH A 149 449 164 HOH HOH . C 3 HOH A 150 450 238 HOH HOH . C 3 HOH A 151 451 153 HOH HOH . C 3 HOH A 152 452 160 HOH HOH . C 3 HOH A 153 453 191 HOH HOH . C 3 HOH A 154 454 204 HOH HOH . C 3 HOH A 155 455 207 HOH HOH . C 3 HOH A 156 456 169 HOH HOH . C 3 HOH A 157 457 27 HOH HOH . C 3 HOH A 158 458 227 HOH HOH . C 3 HOH A 159 459 52 HOH HOH . C 3 HOH A 160 460 126 HOH HOH . C 3 HOH A 161 461 96 HOH HOH . C 3 HOH A 162 462 209 HOH HOH . C 3 HOH A 163 463 198 HOH HOH . C 3 HOH A 164 464 119 HOH HOH . C 3 HOH A 165 465 97 HOH HOH . C 3 HOH A 166 466 230 HOH HOH . C 3 HOH A 167 467 201 HOH HOH . C 3 HOH A 168 468 166 HOH HOH . C 3 HOH A 169 469 179 HOH HOH . C 3 HOH A 170 470 55 HOH HOH . C 3 HOH A 171 471 68 HOH HOH . C 3 HOH A 172 472 226 HOH HOH . C 3 HOH A 173 473 117 HOH HOH . C 3 HOH A 174 474 171 HOH HOH . C 3 HOH A 175 475 172 HOH HOH . C 3 HOH A 176 476 193 HOH HOH . C 3 HOH A 177 477 59 HOH HOH . C 3 HOH A 178 478 185 HOH HOH . C 3 HOH A 179 479 181 HOH HOH . C 3 HOH A 180 480 180 HOH HOH . C 3 HOH A 181 481 129 HOH HOH . C 3 HOH A 182 482 188 HOH HOH . C 3 HOH A 183 483 222 HOH HOH . C 3 HOH A 184 484 158 HOH HOH . C 3 HOH A 185 485 237 HOH HOH . C 3 HOH A 186 486 104 HOH HOH . C 3 HOH A 187 487 23 HOH HOH . C 3 HOH A 188 488 192 HOH HOH . C 3 HOH A 189 489 98 HOH HOH . C 3 HOH A 190 490 116 HOH HOH . C 3 HOH A 191 491 157 HOH HOH . C 3 HOH A 192 492 136 HOH HOH . C 3 HOH A 193 493 224 HOH HOH . C 3 HOH A 194 494 221 HOH HOH . C 3 HOH A 195 495 199 HOH HOH . C 3 HOH A 196 496 213 HOH HOH . C 3 HOH A 197 497 115 HOH HOH . C 3 HOH A 198 498 147 HOH HOH . C 3 HOH A 199 499 144 HOH HOH . C 3 HOH A 200 500 139 HOH HOH . C 3 HOH A 201 501 102 HOH HOH . C 3 HOH A 202 502 66 HOH HOH . C 3 HOH A 203 503 176 HOH HOH . C 3 HOH A 204 504 155 HOH HOH . C 3 HOH A 205 505 189 HOH HOH . C 3 HOH A 206 506 228 HOH HOH . C 3 HOH A 207 507 167 HOH HOH . C 3 HOH A 208 508 236 HOH HOH . C 3 HOH A 209 509 145 HOH HOH . C 3 HOH A 210 510 131 HOH HOH . C 3 HOH A 211 511 140 HOH HOH . C 3 HOH A 212 512 88 HOH HOH . C 3 HOH A 213 513 223 HOH HOH . C 3 HOH A 214 514 214 HOH HOH . C 3 HOH A 215 515 114 HOH HOH . C 3 HOH A 216 516 197 HOH HOH . C 3 HOH A 217 517 142 HOH HOH . C 3 HOH A 218 518 118 HOH HOH . C 3 HOH A 219 519 220 HOH HOH . C 3 HOH A 220 520 183 HOH HOH . C 3 HOH A 221 521 217 HOH HOH . C 3 HOH A 222 522 162 HOH HOH . C 3 HOH A 223 523 138 HOH HOH . C 3 HOH A 224 524 233 HOH HOH . C 3 HOH A 225 525 234 HOH HOH . C 3 HOH A 226 526 112 HOH HOH . C 3 HOH A 227 527 212 HOH HOH . C 3 HOH A 228 528 187 HOH HOH . C 3 HOH A 229 529 231 HOH HOH . C 3 HOH A 230 530 151 HOH HOH . C 3 HOH A 231 531 182 HOH HOH . C 3 HOH A 232 532 186 HOH HOH . C 3 HOH A 233 533 174 HOH HOH . C 3 HOH A 234 534 196 HOH HOH . C 3 HOH A 235 535 175 HOH HOH . C 3 HOH A 236 536 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LXA . . . B 2 -20.207 -6.474 6.37 0.5 26.75 ? N1 LXA 201 A 1 HETATM 2 C C4 LXA . . . B 2 -20.072 -7.809 6.484 0.5 26.06 ? C4 LXA 201 A 1 HETATM 3 C C5 LXA . . . B 2 -20.841 -6.224 5.173 0.5 22.01 ? C5 LXA 201 A 1 HETATM 4 C C6 LXA . . . B 2 -21.233 -5.048 4.552 0.5 20.06 ? C6 LXA 201 A 1 HETATM 5 C C7 LXA . . . B 2 -21.854 -5.171 3.331 0.5 16.53 ? C7 LXA 201 A 1 HETATM 6 C C8 LXA . . . B 2 -22.071 -6.417 2.746 0.5 13.6 ? C8 LXA 201 A 1 HETATM 7 C C10 LXA . . . B 2 -21.054 -7.476 4.602 0.5 22.24 ? C10 LXA 201 A 1 HETATM 8 N N LXA . . . B 2 -17.996 -8.076 7.782 0.5 26.7 ? N LXA 201 A 1 HETATM 9 C C LXA . . . B 2 -15.519 -6.109 8.844 0.5 25.44 ? C LXA 201 A 1 HETATM 10 O O LXA . . . B 2 -15.489 -7.459 8.389 0.5 30.78 ? O LXA 201 A 1 HETATM 11 C C1 LXA . . . B 2 -15.749 -7.613 7.018 0.5 21.86 ? C1 LXA 201 A 1 HETATM 12 C C2 LXA . . . B 2 -17.127 -8.196 6.779 0.5 24.42 ? C2 LXA 201 A 1 HETATM 13 C C3 LXA . . . B 2 -19.403 -8.442 7.662 0.5 26.63 ? C3 LXA 201 A 1 HETATM 14 C C9 LXA . . . B 2 -21.685 -7.582 3.365 0.5 21.68 ? C9 LXA 201 A 1 HETATM 15 N N2 LXA . . . B 2 -20.552 -8.463 5.445 0.5 22.7 ? N2 LXA 201 A 1 HETATM 16 O O1 LXA . . . B 2 -17.385 -8.75 5.71 0.5 15.53 ? O1 LXA 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #