data_9F4Y # _model_server_result.job_id 0yw4CWLVsZ2RB-k_58dnqA _model_server_result.datetime_utc '2024-10-11 02:17:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F4Y # _exptl.entry_id 9F4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 197.231 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3,4,5-trimethoxyphenyl)methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.19 _cell.angle_gamma 90 _cell.entry_id 9F4Y _cell.length_a 38.029 _cell.length_b 43.882 _cell.length_c 55.875 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id CE2 _struct_conn.ptnr1_label_comp_id PHE _struct_conn.ptnr1_label_seq_id 20 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PHE _struct_conn.ptnr1_auth_seq_id 17 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id W0S _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id W0S _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.541 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N O3' _chem_comp.formula_weight 197.231 _chem_comp.id W0S _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3,4,5-trimethoxyphenyl)methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 O1 W0S sing 376 n n O1 C6 W0S sing 377 n n C6 C5 W0S doub 378 n y C6 C8 W0S sing 379 n y C5 C3 W0S sing 380 n y O2 C9 W0S sing 381 n n O2 C8 W0S sing 382 n n C8 C1 W0S doub 383 n y C3 C4 W0S sing 384 n n C3 C2 W0S doub 385 n y C4 N W0S sing 386 n n C1 C2 W0S sing 387 n y C1 O W0S sing 388 n n O C W0S sing 389 n n C4 H1 W0S sing 390 n n C4 H2 W0S sing 391 n n C5 H3 W0S sing 392 n n C7 H4 W0S sing 393 n n C7 H5 W0S sing 394 n n C7 H6 W0S sing 395 n n N H7 W0S sing 396 n n N H8 W0S sing 397 n n C2 H10 W0S sing 398 n n C9 H11 W0S sing 399 n n C9 H12 W0S sing 400 n n C9 H13 W0S sing 401 n n C H14 W0S sing 402 n n C H15 W0S sing 403 n n C H16 W0S sing 404 n n # _atom_sites.entry_id 9F4Y _atom_sites.fract_transf_matrix[1][1] 0.026296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001926 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W0S A 1 201 1 W0S LIG . C 3 HOH A 1 301 196 HOH HOH . C 3 HOH A 2 302 202 HOH HOH . C 3 HOH A 3 303 81 HOH HOH . C 3 HOH A 4 304 201 HOH HOH . C 3 HOH A 5 305 12 HOH HOH . C 3 HOH A 6 306 177 HOH HOH . C 3 HOH A 7 307 88 HOH HOH . C 3 HOH A 8 308 66 HOH HOH . C 3 HOH A 9 309 67 HOH HOH . C 3 HOH A 10 310 192 HOH HOH . C 3 HOH A 11 311 22 HOH HOH . C 3 HOH A 12 312 76 HOH HOH . C 3 HOH A 13 313 120 HOH HOH . C 3 HOH A 14 314 16 HOH HOH . C 3 HOH A 15 315 39 HOH HOH . C 3 HOH A 16 316 112 HOH HOH . C 3 HOH A 17 317 165 HOH HOH . C 3 HOH A 18 318 171 HOH HOH . C 3 HOH A 19 319 210 HOH HOH . C 3 HOH A 20 320 27 HOH HOH . C 3 HOH A 21 321 2 HOH HOH . C 3 HOH A 22 322 183 HOH HOH . C 3 HOH A 23 323 74 HOH HOH . C 3 HOH A 24 324 140 HOH HOH . C 3 HOH A 25 325 89 HOH HOH . C 3 HOH A 26 326 152 HOH HOH . C 3 HOH A 27 327 38 HOH HOH . C 3 HOH A 28 328 186 HOH HOH . C 3 HOH A 29 329 190 HOH HOH . C 3 HOH A 30 330 24 HOH HOH . C 3 HOH A 31 331 17 HOH HOH . C 3 HOH A 32 332 61 HOH HOH . C 3 HOH A 33 333 41 HOH HOH . C 3 HOH A 34 334 63 HOH HOH . C 3 HOH A 35 335 3 HOH HOH . C 3 HOH A 36 336 110 HOH HOH . C 3 HOH A 37 337 104 HOH HOH . C 3 HOH A 38 338 129 HOH HOH . C 3 HOH A 39 339 211 HOH HOH . C 3 HOH A 40 340 35 HOH HOH . C 3 HOH A 41 341 102 HOH HOH . C 3 HOH A 42 342 70 HOH HOH . C 3 HOH A 43 343 21 HOH HOH . C 3 HOH A 44 344 220 HOH HOH . C 3 HOH A 45 345 5 HOH HOH . C 3 HOH A 46 346 14 HOH HOH . C 3 HOH A 47 347 197 HOH HOH . C 3 HOH A 48 348 224 HOH HOH . C 3 HOH A 49 349 135 HOH HOH . C 3 HOH A 50 350 180 HOH HOH . C 3 HOH A 51 351 15 HOH HOH . C 3 HOH A 52 352 73 HOH HOH . C 3 HOH A 53 353 4 HOH HOH . C 3 HOH A 54 354 7 HOH HOH . C 3 HOH A 55 355 101 HOH HOH . C 3 HOH A 56 356 11 HOH HOH . C 3 HOH A 57 357 6 HOH HOH . C 3 HOH A 58 358 51 HOH HOH . C 3 HOH A 59 359 10 HOH HOH . C 3 HOH A 60 360 223 HOH HOH . C 3 HOH A 61 361 42 HOH HOH . C 3 HOH A 62 362 154 HOH HOH . C 3 HOH A 63 363 40 HOH HOH . C 3 HOH A 64 364 85 HOH HOH . C 3 HOH A 65 365 185 HOH HOH . C 3 HOH A 66 366 20 HOH HOH . C 3 HOH A 67 367 33 HOH HOH . C 3 HOH A 68 368 59 HOH HOH . C 3 HOH A 69 369 50 HOH HOH . C 3 HOH A 70 370 78 HOH HOH . C 3 HOH A 71 371 82 HOH HOH . C 3 HOH A 72 372 8 HOH HOH . C 3 HOH A 73 373 96 HOH HOH . C 3 HOH A 74 374 172 HOH HOH . C 3 HOH A 75 375 28 HOH HOH . C 3 HOH A 76 376 166 HOH HOH . C 3 HOH A 77 377 55 HOH HOH . C 3 HOH A 78 378 29 HOH HOH . C 3 HOH A 79 379 43 HOH HOH . C 3 HOH A 80 380 109 HOH HOH . C 3 HOH A 81 381 26 HOH HOH . C 3 HOH A 82 382 125 HOH HOH . C 3 HOH A 83 383 34 HOH HOH . C 3 HOH A 84 384 9 HOH HOH . C 3 HOH A 85 385 13 HOH HOH . C 3 HOH A 86 386 36 HOH HOH . C 3 HOH A 87 387 1 HOH HOH . C 3 HOH A 88 388 44 HOH HOH . C 3 HOH A 89 389 25 HOH HOH . C 3 HOH A 90 390 48 HOH HOH . C 3 HOH A 91 391 75 HOH HOH . C 3 HOH A 92 392 32 HOH HOH . C 3 HOH A 93 393 116 HOH HOH . C 3 HOH A 94 394 72 HOH HOH . C 3 HOH A 95 395 60 HOH HOH . C 3 HOH A 96 396 231 HOH HOH . C 3 HOH A 97 397 106 HOH HOH . C 3 HOH A 98 398 168 HOH HOH . C 3 HOH A 99 399 30 HOH HOH . C 3 HOH A 100 400 98 HOH HOH . C 3 HOH A 101 401 133 HOH HOH . C 3 HOH A 102 402 37 HOH HOH . C 3 HOH A 103 403 18 HOH HOH . C 3 HOH A 104 404 68 HOH HOH . C 3 HOH A 105 405 49 HOH HOH . C 3 HOH A 106 406 233 HOH HOH . C 3 HOH A 107 407 99 HOH HOH . C 3 HOH A 108 408 53 HOH HOH . C 3 HOH A 109 409 54 HOH HOH . C 3 HOH A 110 410 83 HOH HOH . C 3 HOH A 111 411 46 HOH HOH . C 3 HOH A 112 412 174 HOH HOH . C 3 HOH A 113 413 56 HOH HOH . C 3 HOH A 114 414 163 HOH HOH . C 3 HOH A 115 415 134 HOH HOH . C 3 HOH A 116 416 31 HOH HOH . C 3 HOH A 117 417 90 HOH HOH . C 3 HOH A 118 418 128 HOH HOH . C 3 HOH A 119 419 108 HOH HOH . C 3 HOH A 120 420 132 HOH HOH . C 3 HOH A 121 421 188 HOH HOH . C 3 HOH A 122 422 184 HOH HOH . C 3 HOH A 123 423 207 HOH HOH . C 3 HOH A 124 424 64 HOH HOH . C 3 HOH A 125 425 92 HOH HOH . C 3 HOH A 126 426 187 HOH HOH . C 3 HOH A 127 427 52 HOH HOH . C 3 HOH A 128 428 71 HOH HOH . C 3 HOH A 129 429 62 HOH HOH . C 3 HOH A 130 430 77 HOH HOH . C 3 HOH A 131 431 124 HOH HOH . C 3 HOH A 132 432 147 HOH HOH . C 3 HOH A 133 433 100 HOH HOH . C 3 HOH A 134 434 161 HOH HOH . C 3 HOH A 135 435 87 HOH HOH . C 3 HOH A 136 436 203 HOH HOH . C 3 HOH A 137 437 119 HOH HOH . C 3 HOH A 138 438 45 HOH HOH . C 3 HOH A 139 439 170 HOH HOH . C 3 HOH A 140 440 209 HOH HOH . C 3 HOH A 141 441 23 HOH HOH . C 3 HOH A 142 442 80 HOH HOH . C 3 HOH A 143 443 136 HOH HOH . C 3 HOH A 144 444 93 HOH HOH . C 3 HOH A 145 445 121 HOH HOH . C 3 HOH A 146 446 230 HOH HOH . C 3 HOH A 147 447 226 HOH HOH . C 3 HOH A 148 448 47 HOH HOH . C 3 HOH A 149 449 94 HOH HOH . C 3 HOH A 150 450 111 HOH HOH . C 3 HOH A 151 451 117 HOH HOH . C 3 HOH A 152 452 176 HOH HOH . C 3 HOH A 153 453 57 HOH HOH . C 3 HOH A 154 454 144 HOH HOH . C 3 HOH A 155 455 181 HOH HOH . C 3 HOH A 156 456 95 HOH HOH . C 3 HOH A 157 457 160 HOH HOH . C 3 HOH A 158 458 195 HOH HOH . C 3 HOH A 159 459 222 HOH HOH . C 3 HOH A 160 460 193 HOH HOH . C 3 HOH A 161 461 175 HOH HOH . C 3 HOH A 162 462 219 HOH HOH . C 3 HOH A 163 463 114 HOH HOH . C 3 HOH A 164 464 122 HOH HOH . C 3 HOH A 165 465 178 HOH HOH . C 3 HOH A 166 466 194 HOH HOH . C 3 HOH A 167 467 118 HOH HOH . C 3 HOH A 168 468 115 HOH HOH . C 3 HOH A 169 469 139 HOH HOH . C 3 HOH A 170 470 150 HOH HOH . C 3 HOH A 171 471 218 HOH HOH . C 3 HOH A 172 472 217 HOH HOH . C 3 HOH A 173 473 156 HOH HOH . C 3 HOH A 174 474 103 HOH HOH . C 3 HOH A 175 475 143 HOH HOH . C 3 HOH A 176 476 164 HOH HOH . C 3 HOH A 177 477 65 HOH HOH . C 3 HOH A 178 478 142 HOH HOH . C 3 HOH A 179 479 206 HOH HOH . C 3 HOH A 180 480 141 HOH HOH . C 3 HOH A 181 481 105 HOH HOH . C 3 HOH A 182 482 232 HOH HOH . C 3 HOH A 183 483 159 HOH HOH . C 3 HOH A 184 484 130 HOH HOH . C 3 HOH A 185 485 189 HOH HOH . C 3 HOH A 186 486 58 HOH HOH . C 3 HOH A 187 487 153 HOH HOH . C 3 HOH A 188 488 200 HOH HOH . C 3 HOH A 189 489 148 HOH HOH . C 3 HOH A 190 490 131 HOH HOH . C 3 HOH A 191 491 151 HOH HOH . C 3 HOH A 192 492 155 HOH HOH . C 3 HOH A 193 493 173 HOH HOH . C 3 HOH A 194 494 221 HOH HOH . C 3 HOH A 195 495 208 HOH HOH . C 3 HOH A 196 496 138 HOH HOH . C 3 HOH A 197 497 86 HOH HOH . C 3 HOH A 198 498 19 HOH HOH . C 3 HOH A 199 499 213 HOH HOH . C 3 HOH A 200 500 162 HOH HOH . C 3 HOH A 201 501 137 HOH HOH . C 3 HOH A 202 502 228 HOH HOH . C 3 HOH A 203 503 79 HOH HOH . C 3 HOH A 204 504 167 HOH HOH . C 3 HOH A 205 505 204 HOH HOH . C 3 HOH A 206 506 91 HOH HOH . C 3 HOH A 207 507 205 HOH HOH . C 3 HOH A 208 508 191 HOH HOH . C 3 HOH A 209 509 146 HOH HOH . C 3 HOH A 210 510 199 HOH HOH . C 3 HOH A 211 511 69 HOH HOH . C 3 HOH A 212 512 127 HOH HOH . C 3 HOH A 213 513 97 HOH HOH . C 3 HOH A 214 514 214 HOH HOH . C 3 HOH A 215 515 149 HOH HOH . C 3 HOH A 216 516 215 HOH HOH . C 3 HOH A 217 517 169 HOH HOH . C 3 HOH A 218 518 157 HOH HOH . C 3 HOH A 219 519 107 HOH HOH . C 3 HOH A 220 520 179 HOH HOH . C 3 HOH A 221 521 182 HOH HOH . C 3 HOH A 222 522 145 HOH HOH . C 3 HOH A 223 523 84 HOH HOH . C 3 HOH A 224 524 198 HOH HOH . C 3 HOH A 225 525 216 HOH HOH . C 3 HOH A 226 526 113 HOH HOH . C 3 HOH A 227 527 123 HOH HOH . C 3 HOH A 228 528 158 HOH HOH . C 3 HOH A 229 529 225 HOH HOH . C 3 HOH A 230 530 126 HOH HOH . C 3 HOH A 231 531 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 W0S . . . B 2 -20.096 -7.151 7.577 0.74 23.88 ? C4 W0S 201 A 1 HETATM 2 C C5 W0S . . . B 2 -18.458 -5.827 8.93 0.74 20.76 ? C5 W0S 201 A 1 HETATM 3 C C6 W0S . . . B 2 -18.158 -4.808 9.823 0.74 17.78 ? C6 W0S 201 A 1 HETATM 4 C C7 W0S . . . B 2 -15.811 -5.094 9.561 0.74 19.48 ? C7 W0S 201 A 1 HETATM 5 C C8 W0S . . . B 2 -19.183 -4.014 10.342 0.74 21.89 ? C8 W0S 201 A 1 HETATM 6 N N W0S . . . B 2 -18.877 -7.814 7.133 0.74 34.62 ? N W0S 201 A 1 HETATM 7 C C3 W0S . . . B 2 -19.771 -6.048 8.548 0.74 19.64 ? C3 W0S 201 A 1 HETATM 8 C C2 W0S . . . B 2 -20.791 -5.262 9.049 0.74 24.27 ? C2 W0S 201 A 1 HETATM 9 O O1 W0S . . . B 2 -16.9 -4.509 10.263 0.74 18.89 ? O1 W0S 201 A 1 HETATM 10 O O2 W0S . . . B 2 -18.891 -3 11.223 0.74 20.89 ? O2 W0S 201 A 1 HETATM 11 C C9 W0S . . . B 2 -18.617 -1.755 10.591 0.74 16.69 ? C9 W0S 201 A 1 HETATM 12 C C1 W0S . . . B 2 -20.503 -4.245 9.944 0.74 21.75 ? C1 W0S 201 A 1 HETATM 13 O O W0S . . . B 2 -21.442 -3.419 10.49 0.74 25.49 ? O W0S 201 A 1 HETATM 14 C C W0S . . . B 2 -22.767 -3.928 10.58 0.74 24.21 ? C W0S 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #