data_9F5G # _model_server_result.job_id kuA-UoozV6di-VnL_fgieQ _model_server_result.datetime_utc '2025-01-22 08:02:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9F5G # _exptl.entry_id 9F5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(2R)-1-(methanesulfonyl)pyrrolidin-2-yl]methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.33 _cell.angle_gamma 90 _cell.entry_id 9F5G _cell.length_a 37.959 _cell.length_b 43.962 _cell.length_c 56.041 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 N2 O2 S' _chem_comp.formula_weight 178.253 _chem_comp.id Z9I _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(2R)-1-(methanesulfonyl)pyrrolidin-2-yl]methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 S02 Z9I doub 376 n n S02 N05 Z9I sing 377 n n S02 C01 Z9I sing 378 n n S02 O03 Z9I doub 379 n n N05 C06 Z9I sing 380 n n N05 C09 Z9I sing 381 n n C06 C07 Z9I sing 382 n n C10 C09 Z9I sing 383 n n C10 N11 Z9I sing 384 n n C09 C08 Z9I sing 385 n n C07 C08 Z9I sing 386 n n C10 H1 Z9I sing 387 n n C10 H2 Z9I sing 388 n n C01 H3 Z9I sing 389 n n C01 H4 Z9I sing 390 n n C01 H5 Z9I sing 391 n n C06 H6 Z9I sing 392 n n C06 H7 Z9I sing 393 n n C07 H8 Z9I sing 394 n n C07 H9 Z9I sing 395 n n C08 H10 Z9I sing 396 n n C08 H11 Z9I sing 397 n n C09 H12 Z9I sing 398 n n N11 H13 Z9I sing 399 n n N11 H14 Z9I sing 400 n n # _atom_sites.entry_id 9F5G _atom_sites.fract_transf_matrix[1][1] 0.026344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001995 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Z9I A 1 201 1 Z9I LIG . C 3 HOH A 1 301 223 HOH HOH . C 3 HOH A 2 302 63 HOH HOH . C 3 HOH A 3 303 25 HOH HOH . C 3 HOH A 4 304 80 HOH HOH . C 3 HOH A 5 305 213 HOH HOH . C 3 HOH A 6 306 221 HOH HOH . C 3 HOH A 7 307 145 HOH HOH . C 3 HOH A 8 308 51 HOH HOH . C 3 HOH A 9 309 205 HOH HOH . C 3 HOH A 10 310 46 HOH HOH . C 3 HOH A 11 311 95 HOH HOH . C 3 HOH A 12 312 54 HOH HOH . C 3 HOH A 13 313 38 HOH HOH . C 3 HOH A 14 314 164 HOH HOH . C 3 HOH A 15 315 197 HOH HOH . C 3 HOH A 16 316 7 HOH HOH . C 3 HOH A 17 317 74 HOH HOH . C 3 HOH A 18 318 132 HOH HOH . C 3 HOH A 19 319 209 HOH HOH . C 3 HOH A 20 320 106 HOH HOH . C 3 HOH A 21 321 107 HOH HOH . C 3 HOH A 22 322 160 HOH HOH . C 3 HOH A 23 323 231 HOH HOH . C 3 HOH A 24 324 23 HOH HOH . C 3 HOH A 25 325 108 HOH HOH . C 3 HOH A 26 326 141 HOH HOH . C 3 HOH A 27 327 1 HOH HOH . C 3 HOH A 28 328 225 HOH HOH . C 3 HOH A 29 329 177 HOH HOH . C 3 HOH A 30 330 183 HOH HOH . C 3 HOH A 31 331 2 HOH HOH . C 3 HOH A 32 332 119 HOH HOH . C 3 HOH A 33 333 40 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 182 HOH HOH . C 3 HOH A 36 336 17 HOH HOH . C 3 HOH A 37 337 34 HOH HOH . C 3 HOH A 38 338 115 HOH HOH . C 3 HOH A 39 339 8 HOH HOH . C 3 HOH A 40 340 58 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 4 HOH HOH . C 3 HOH A 43 343 165 HOH HOH . C 3 HOH A 44 344 189 HOH HOH . C 3 HOH A 45 345 12 HOH HOH . C 3 HOH A 46 346 92 HOH HOH . C 3 HOH A 47 347 96 HOH HOH . C 3 HOH A 48 348 131 HOH HOH . C 3 HOH A 49 349 16 HOH HOH . C 3 HOH A 50 350 13 HOH HOH . C 3 HOH A 51 351 6 HOH HOH . C 3 HOH A 52 352 122 HOH HOH . C 3 HOH A 53 353 97 HOH HOH . C 3 HOH A 54 354 150 HOH HOH . C 3 HOH A 55 355 31 HOH HOH . C 3 HOH A 56 356 11 HOH HOH . C 3 HOH A 57 357 218 HOH HOH . C 3 HOH A 58 358 91 HOH HOH . C 3 HOH A 59 359 45 HOH HOH . C 3 HOH A 60 360 198 HOH HOH . C 3 HOH A 61 361 29 HOH HOH . C 3 HOH A 62 362 117 HOH HOH . C 3 HOH A 63 363 90 HOH HOH . C 3 HOH A 64 364 67 HOH HOH . C 3 HOH A 65 365 149 HOH HOH . C 3 HOH A 66 366 210 HOH HOH . C 3 HOH A 67 367 39 HOH HOH . C 3 HOH A 68 368 36 HOH HOH . C 3 HOH A 69 369 196 HOH HOH . C 3 HOH A 70 370 61 HOH HOH . C 3 HOH A 71 371 88 HOH HOH . C 3 HOH A 72 372 9 HOH HOH . C 3 HOH A 73 373 72 HOH HOH . C 3 HOH A 74 374 87 HOH HOH . C 3 HOH A 75 375 66 HOH HOH . C 3 HOH A 76 376 59 HOH HOH . C 3 HOH A 77 377 3 HOH HOH . C 3 HOH A 78 378 24 HOH HOH . C 3 HOH A 79 379 76 HOH HOH . C 3 HOH A 80 380 18 HOH HOH . C 3 HOH A 81 381 20 HOH HOH . C 3 HOH A 82 382 53 HOH HOH . C 3 HOH A 83 383 14 HOH HOH . C 3 HOH A 84 384 85 HOH HOH . C 3 HOH A 85 385 172 HOH HOH . C 3 HOH A 86 386 69 HOH HOH . C 3 HOH A 87 387 228 HOH HOH . C 3 HOH A 88 388 114 HOH HOH . C 3 HOH A 89 389 166 HOH HOH . C 3 HOH A 90 390 52 HOH HOH . C 3 HOH A 91 391 35 HOH HOH . C 3 HOH A 92 392 28 HOH HOH . C 3 HOH A 93 393 64 HOH HOH . C 3 HOH A 94 394 78 HOH HOH . C 3 HOH A 95 395 15 HOH HOH . C 3 HOH A 96 396 127 HOH HOH . C 3 HOH A 97 397 152 HOH HOH . C 3 HOH A 98 398 94 HOH HOH . C 3 HOH A 99 399 27 HOH HOH . C 3 HOH A 100 400 200 HOH HOH . C 3 HOH A 101 401 148 HOH HOH . C 3 HOH A 102 402 222 HOH HOH . C 3 HOH A 103 403 123 HOH HOH . C 3 HOH A 104 404 192 HOH HOH . C 3 HOH A 105 405 125 HOH HOH . C 3 HOH A 106 406 158 HOH HOH . C 3 HOH A 107 407 47 HOH HOH . C 3 HOH A 108 408 60 HOH HOH . C 3 HOH A 109 409 55 HOH HOH . C 3 HOH A 110 410 68 HOH HOH . C 3 HOH A 111 411 30 HOH HOH . C 3 HOH A 112 412 83 HOH HOH . C 3 HOH A 113 413 181 HOH HOH . C 3 HOH A 114 414 22 HOH HOH . C 3 HOH A 115 415 111 HOH HOH . C 3 HOH A 116 416 37 HOH HOH . C 3 HOH A 117 417 43 HOH HOH . C 3 HOH A 118 418 99 HOH HOH . C 3 HOH A 119 419 26 HOH HOH . C 3 HOH A 120 420 75 HOH HOH . C 3 HOH A 121 421 10 HOH HOH . C 3 HOH A 122 422 143 HOH HOH . C 3 HOH A 123 423 185 HOH HOH . C 3 HOH A 124 424 32 HOH HOH . C 3 HOH A 125 425 19 HOH HOH . C 3 HOH A 126 426 134 HOH HOH . C 3 HOH A 127 427 71 HOH HOH . C 3 HOH A 128 428 48 HOH HOH . C 3 HOH A 129 429 49 HOH HOH . C 3 HOH A 130 430 86 HOH HOH . C 3 HOH A 131 431 184 HOH HOH . C 3 HOH A 132 432 65 HOH HOH . C 3 HOH A 133 433 44 HOH HOH . C 3 HOH A 134 434 187 HOH HOH . C 3 HOH A 135 435 33 HOH HOH . C 3 HOH A 136 436 102 HOH HOH . C 3 HOH A 137 437 173 HOH HOH . C 3 HOH A 138 438 21 HOH HOH . C 3 HOH A 139 439 180 HOH HOH . C 3 HOH A 140 440 56 HOH HOH . C 3 HOH A 141 441 103 HOH HOH . C 3 HOH A 142 442 113 HOH HOH . C 3 HOH A 143 443 133 HOH HOH . C 3 HOH A 144 444 217 HOH HOH . C 3 HOH A 145 445 159 HOH HOH . C 3 HOH A 146 446 144 HOH HOH . C 3 HOH A 147 447 82 HOH HOH . C 3 HOH A 148 448 62 HOH HOH . C 3 HOH A 149 449 191 HOH HOH . C 3 HOH A 150 450 153 HOH HOH . C 3 HOH A 151 451 93 HOH HOH . C 3 HOH A 152 452 206 HOH HOH . C 3 HOH A 153 453 120 HOH HOH . C 3 HOH A 154 454 169 HOH HOH . C 3 HOH A 155 455 129 HOH HOH . C 3 HOH A 156 456 202 HOH HOH . C 3 HOH A 157 457 70 HOH HOH . C 3 HOH A 158 458 155 HOH HOH . C 3 HOH A 159 459 212 HOH HOH . C 3 HOH A 160 460 42 HOH HOH . C 3 HOH A 161 461 118 HOH HOH . C 3 HOH A 162 462 140 HOH HOH . C 3 HOH A 163 463 109 HOH HOH . C 3 HOH A 164 464 227 HOH HOH . C 3 HOH A 165 465 130 HOH HOH . C 3 HOH A 166 466 190 HOH HOH . C 3 HOH A 167 467 176 HOH HOH . C 3 HOH A 168 468 201 HOH HOH . C 3 HOH A 169 469 151 HOH HOH . C 3 HOH A 170 470 179 HOH HOH . C 3 HOH A 171 471 211 HOH HOH . C 3 HOH A 172 472 89 HOH HOH . C 3 HOH A 173 473 126 HOH HOH . C 3 HOH A 174 474 98 HOH HOH . C 3 HOH A 175 475 174 HOH HOH . C 3 HOH A 176 476 136 HOH HOH . C 3 HOH A 177 477 124 HOH HOH . C 3 HOH A 178 478 79 HOH HOH . C 3 HOH A 179 479 229 HOH HOH . C 3 HOH A 180 480 104 HOH HOH . C 3 HOH A 181 481 128 HOH HOH . C 3 HOH A 182 482 170 HOH HOH . C 3 HOH A 183 483 178 HOH HOH . C 3 HOH A 184 484 203 HOH HOH . C 3 HOH A 185 485 161 HOH HOH . C 3 HOH A 186 486 216 HOH HOH . C 3 HOH A 187 487 77 HOH HOH . C 3 HOH A 188 488 220 HOH HOH . C 3 HOH A 189 489 193 HOH HOH . C 3 HOH A 190 490 57 HOH HOH . C 3 HOH A 191 491 112 HOH HOH . C 3 HOH A 192 492 137 HOH HOH . C 3 HOH A 193 493 135 HOH HOH . C 3 HOH A 194 494 50 HOH HOH . C 3 HOH A 195 495 195 HOH HOH . C 3 HOH A 196 496 188 HOH HOH . C 3 HOH A 197 497 186 HOH HOH . C 3 HOH A 198 498 81 HOH HOH . C 3 HOH A 199 499 207 HOH HOH . C 3 HOH A 200 500 147 HOH HOH . C 3 HOH A 201 501 199 HOH HOH . C 3 HOH A 202 502 224 HOH HOH . C 3 HOH A 203 503 84 HOH HOH . C 3 HOH A 204 504 146 HOH HOH . C 3 HOH A 205 505 105 HOH HOH . C 3 HOH A 206 506 116 HOH HOH . C 3 HOH A 207 507 142 HOH HOH . C 3 HOH A 208 508 101 HOH HOH . C 3 HOH A 209 509 232 HOH HOH . C 3 HOH A 210 510 73 HOH HOH . C 3 HOH A 211 511 171 HOH HOH . C 3 HOH A 212 512 219 HOH HOH . C 3 HOH A 213 513 121 HOH HOH . C 3 HOH A 214 514 208 HOH HOH . C 3 HOH A 215 515 204 HOH HOH . C 3 HOH A 216 516 214 HOH HOH . C 3 HOH A 217 517 139 HOH HOH . C 3 HOH A 218 518 138 HOH HOH . C 3 HOH A 219 519 154 HOH HOH . C 3 HOH A 220 520 156 HOH HOH . C 3 HOH A 221 521 110 HOH HOH . C 3 HOH A 222 522 100 HOH HOH . C 3 HOH A 223 523 175 HOH HOH . C 3 HOH A 224 524 194 HOH HOH . C 3 HOH A 225 525 162 HOH HOH . C 3 HOH A 226 526 168 HOH HOH . C 3 HOH A 227 527 163 HOH HOH . C 3 HOH A 228 528 167 HOH HOH . C 3 HOH A 229 529 215 HOH HOH . C 3 HOH A 230 530 226 HOH HOH . C 3 HOH A 231 531 157 HOH HOH . C 3 HOH A 232 532 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Z9I . . . B 2 -16.912 17.883 7.312 0.83 32.05 ? C10 Z9I 201 A 1 HETATM 2 C C01 Z9I . . . B 2 -15.224 13.553 8.315 0.83 7.64 ? C01 Z9I 201 A 1 HETATM 3 S S02 Z9I . . . B 2 -16.718 14.339 7.861 0.83 18.77 ? S02 Z9I 201 A 1 HETATM 4 O O03 Z9I . . . B 2 -17.822 13.581 8.37 0.83 15.83 ? O03 Z9I 201 A 1 HETATM 5 O O04 Z9I . . . B 2 -16.662 14.648 6.463 0.83 22.72 ? O04 Z9I 201 A 1 HETATM 6 N N05 Z9I . . . B 2 -16.789 15.765 8.626 0.83 25.17 ? N05 Z9I 201 A 1 HETATM 7 C C06 Z9I . . . B 2 -16.912 15.834 10.092 0.83 34.94 ? C06 Z9I 201 A 1 HETATM 8 C C07 Z9I . . . B 2 -16.438 17.223 10.44 0.83 26.8 ? C07 Z9I 201 A 1 HETATM 9 C C08 Z9I . . . B 2 -15.423 17.548 9.358 0.83 26.22 ? C08 Z9I 201 A 1 HETATM 10 C C09 Z9I . . . B 2 -16.02 16.922 8.095 0.83 29.61 ? C09 Z9I 201 A 1 HETATM 11 N N11 Z9I . . . B 2 -16.118 18.671 6.378 0.83 25.56 ? N11 Z9I 201 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #