data_9F7V # _model_server_result.job_id '_XeQuDt0fFoK48h6inj8gg' _model_server_result.datetime_utc '2025-02-23 14:02:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 9F7V # _exptl.entry_id 9F7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F7V _cell.length_a 88.366 _cell.length_b 88.366 _cell.length_c 284.455 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,3 B,E,F,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -44.183 -76.527201 47.409167 3 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 44.183 -76.527201 -47.409167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id 16G _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE;N-acetyl-6-O-phosphono-alpha-D-glucosamine;2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 16G sing 1 n n C1 O1 16G sing 2 n n C1 O5 16G sing 3 n n C1 H1 16G sing 4 n n C2 C3 16G sing 5 n n C2 N2 16G sing 6 n n C2 H2 16G sing 7 n n C3 C4 16G sing 8 n n C3 O3 16G sing 9 n n C3 H3 16G sing 10 n n C4 C5 16G sing 11 n n C4 O4 16G sing 12 n n C4 H4 16G sing 13 n n C5 C6 16G sing 14 n n C5 O5 16G sing 15 n n C5 H5 16G sing 16 n n C6 O6 16G sing 17 n n C6 H61 16G sing 18 n n C6 H62 16G sing 19 n n C7 C8 16G sing 20 n n C7 N2 16G sing 21 n n C7 O7 16G doub 22 n n C8 H81 16G sing 23 n n C8 H82 16G sing 24 n n C8 H83 16G sing 25 n n N2 HN2 16G sing 26 n n O1 HO1 16G sing 27 n n O3 HO3 16G sing 28 n n O4 HO4 16G sing 29 n n O6 P 16G sing 30 n n P O1P 16G doub 31 n n P O2P 16G sing 32 n n P O3P 16G sing 33 n n O2P HOP2 16G sing 34 n n O3P HOP3 16G sing 35 n n # _pdbx_chem_comp_identifier.comp_id 16G _pdbx_chem_comp_identifier.identifier a-D-GlcpNAc6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9F7V _atom_sites.fract_transf_matrix[1][1] 0.011317 _atom_sites.fract_transf_matrix[1][2] 0.006534 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 403 SO4 SO4 . D 3 16G A 1 302 999 16G 16G . E 2 SO4 B 1 301 404 SO4 SO4 . F 3 16G B 1 302 999 16G 16G . G 4 HOH A 1 401 30 HOH HOH . G 4 HOH A 2 402 112 HOH HOH . G 4 HOH A 3 403 13 HOH HOH . G 4 HOH A 4 404 113 HOH HOH . G 4 HOH A 5 405 40 HOH HOH . G 4 HOH A 6 406 23 HOH HOH . G 4 HOH A 7 407 88 HOH HOH . G 4 HOH A 8 408 62 HOH HOH . G 4 HOH A 9 409 109 HOH HOH . G 4 HOH A 10 410 93 HOH HOH . G 4 HOH A 11 411 10 HOH HOH . G 4 HOH A 12 412 15 HOH HOH . G 4 HOH A 13 413 22 HOH HOH . G 4 HOH A 14 414 56 HOH HOH . G 4 HOH A 15 415 82 HOH HOH . G 4 HOH A 16 416 7 HOH HOH . G 4 HOH A 17 417 96 HOH HOH . G 4 HOH A 18 418 80 HOH HOH . G 4 HOH A 19 419 58 HOH HOH . G 4 HOH A 20 420 20 HOH HOH . G 4 HOH A 21 421 16 HOH HOH . G 4 HOH A 22 422 84 HOH HOH . G 4 HOH A 23 423 25 HOH HOH . G 4 HOH A 24 424 34 HOH HOH . G 4 HOH A 25 425 27 HOH HOH . G 4 HOH A 26 426 89 HOH HOH . G 4 HOH A 27 427 8 HOH HOH . G 4 HOH A 28 428 31 HOH HOH . G 4 HOH A 29 429 26 HOH HOH . G 4 HOH A 30 430 57 HOH HOH . G 4 HOH A 31 431 14 HOH HOH . G 4 HOH A 32 432 79 HOH HOH . G 4 HOH A 33 433 77 HOH HOH . G 4 HOH A 34 434 87 HOH HOH . G 4 HOH A 35 435 12 HOH HOH . G 4 HOH A 36 436 105 HOH HOH . G 4 HOH A 37 437 11 HOH HOH . G 4 HOH A 38 438 28 HOH HOH . G 4 HOH A 39 439 24 HOH HOH . G 4 HOH A 40 440 64 HOH HOH . G 4 HOH A 41 441 103 HOH HOH . G 4 HOH A 42 442 1 HOH HOH . G 4 HOH A 43 443 69 HOH HOH . G 4 HOH A 44 444 9 HOH HOH . G 4 HOH A 45 445 21 HOH HOH . G 4 HOH A 46 446 32 HOH HOH . G 4 HOH A 47 447 3 HOH HOH . G 4 HOH A 48 448 4 HOH HOH . G 4 HOH A 49 449 86 HOH HOH . G 4 HOH A 50 450 110 HOH HOH . G 4 HOH A 51 451 19 HOH HOH . G 4 HOH A 52 452 75 HOH HOH . G 4 HOH A 53 453 46 HOH HOH . G 4 HOH A 54 454 94 HOH HOH . G 4 HOH A 55 455 5 HOH HOH . G 4 HOH A 56 456 107 HOH HOH . G 4 HOH A 57 457 76 HOH HOH . G 4 HOH A 58 458 108 HOH HOH . G 4 HOH A 59 459 54 HOH HOH . G 4 HOH A 60 460 43 HOH HOH . G 4 HOH A 61 461 97 HOH HOH . G 4 HOH A 62 462 85 HOH HOH . G 4 HOH A 63 463 101 HOH HOH . G 4 HOH A 64 464 102 HOH HOH . G 4 HOH A 65 465 111 HOH HOH . G 4 HOH A 66 466 91 HOH HOH . G 4 HOH A 67 467 99 HOH HOH . G 4 HOH A 68 468 95 HOH HOH . G 4 HOH A 69 469 63 HOH HOH . G 4 HOH A 70 470 92 HOH HOH . G 4 HOH A 71 471 50 HOH HOH . G 4 HOH A 72 472 117 HOH HOH . G 4 HOH A 73 473 81 HOH HOH . G 4 HOH A 74 474 72 HOH HOH . G 4 HOH A 75 475 73 HOH HOH . G 4 HOH A 76 476 115 HOH HOH . G 4 HOH A 77 477 44 HOH HOH . G 4 HOH A 78 478 114 HOH HOH . G 4 HOH A 79 479 100 HOH HOH . G 4 HOH A 80 480 98 HOH HOH . G 4 HOH A 81 481 104 HOH HOH . H 4 HOH B 1 401 37 HOH HOH . H 4 HOH B 2 402 48 HOH HOH . H 4 HOH B 3 403 60 HOH HOH . H 4 HOH B 4 404 41 HOH HOH . H 4 HOH B 5 405 51 HOH HOH . H 4 HOH B 6 406 35 HOH HOH . H 4 HOH B 7 407 52 HOH HOH . H 4 HOH B 8 408 29 HOH HOH . H 4 HOH B 9 409 47 HOH HOH . H 4 HOH B 10 410 38 HOH HOH . H 4 HOH B 11 411 67 HOH HOH . H 4 HOH B 12 412 39 HOH HOH . H 4 HOH B 13 413 83 HOH HOH . H 4 HOH B 14 414 33 HOH HOH . H 4 HOH B 15 415 59 HOH HOH . H 4 HOH B 16 416 6 HOH HOH . H 4 HOH B 17 417 18 HOH HOH . H 4 HOH B 18 418 61 HOH HOH . H 4 HOH B 19 419 45 HOH HOH . H 4 HOH B 20 420 65 HOH HOH . H 4 HOH B 21 421 90 HOH HOH . H 4 HOH B 22 422 17 HOH HOH . H 4 HOH B 23 423 49 HOH HOH . H 4 HOH B 24 424 55 HOH HOH . H 4 HOH B 25 425 2 HOH HOH . H 4 HOH B 26 426 74 HOH HOH . H 4 HOH B 27 427 36 HOH HOH . H 4 HOH B 28 428 116 HOH HOH . H 4 HOH B 29 429 106 HOH HOH . H 4 HOH B 30 430 42 HOH HOH . H 4 HOH B 31 431 53 HOH HOH . H 4 HOH B 32 432 78 HOH HOH . H 4 HOH B 33 433 70 HOH HOH . H 4 HOH B 34 434 66 HOH HOH . H 4 HOH B 35 435 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 16G . . . D 3 31.471 -44.665 -19.36 1 56.64 ? C1 16G 302 A 1 HETATM 2 C C2 16G . . . D 3 32.909 -45.06 -19.078 1 62.88 ? C2 16G 302 A 1 HETATM 3 C C3 16G . . . D 3 33.082 -45.594 -17.709 1 62.44 ? C3 16G 302 A 1 HETATM 4 C C4 16G . . . D 3 32.558 -44.6 -16.71 1 55.73 ? C4 16G 302 A 1 HETATM 5 C C5 16G . . . D 3 31.084 -44.309 -16.955 1 54.61 ? C5 16G 302 A 1 HETATM 6 C C6 16G . . . D 3 30.618 -43.311 -15.917 1 51.25 ? C6 16G 302 A 1 HETATM 7 C C7 16G . . . D 3 32.958 -47.486 -20.131 1 54.32 ? C7 16G 302 A 1 HETATM 8 C C8 16G . . . D 3 33.461 -48.41 -21.264 1 48.89 ? C8 16G 302 A 1 HETATM 9 N N2 16G . . . D 3 33.351 -46.049 -20.142 1 57.46 ? N2 16G 302 A 1 HETATM 10 O O1 16G . . . D 3 30.725 -45.796 -19.485 1 57.08 ? O1 16G 302 A 1 HETATM 11 O O3 16G . . . D 3 34.495 -45.83 -17.465 1 67.79 ? O3 16G 302 A 1 HETATM 12 O O4 16G . . . D 3 32.718 -45.121 -15.396 1 63.12 ? O4 16G 302 A 1 HETATM 13 O O5 16G . . . D 3 30.846 -43.782 -18.3 1 54.32 ? O5 16G 302 A 1 HETATM 14 O O6 16G . . . D 3 30.555 -43.976 -14.689 1 51.08 ? O6 16G 302 A 1 HETATM 15 O O7 16G . . . D 3 32.272 -47.931 -19.273 1 59.75 ? O7 16G 302 A 1 HETATM 16 P P 16G . . . D 3 29.092 -44.087 -13.871 1 48.26 ? P 16G 302 A 1 HETATM 17 O O1P 16G . . . D 3 29.129 -43.121 -12.715 1 39.87 ? O1P 16G 302 A 1 HETATM 18 O O2P 16G . . . D 3 27.928 -43.728 -14.779 1 44.38 ? O2P 16G 302 A 1 HETATM 19 O O3P 16G . . . D 3 28.897 -45.503 -13.366 1 44.9 ? O3P 16G 302 A 1 HETATM 20 H H1 16G . . . D 3 31.465 -44.166 -20.191 1 67.97 ? H1 16G 302 A 1 HETATM 21 H H2 16G . . . D 3 33.49 -44.286 -19.145 1 75.46 ? H2 16G 302 A 1 HETATM 22 H H3 16G . . . D 3 32.619 -46.441 -17.612 1 74.93 ? H3 16G 302 A 1 HETATM 23 H H4 16G . . . D 3 33.069 -43.778 -16.775 1 66.88 ? H4 16G 302 A 1 HETATM 24 H H5 16G . . . D 3 30.57 -45.125 -16.857 1 65.54 ? H5 16G 302 A 1 HETATM 25 H H61 16G . . . D 3 31.245 -42.573 -15.862 1 61.5 ? H61 16G 302 A 1 HETATM 26 H H62 16G . . . D 3 29.741 -42.971 -16.155 1 61.5 ? H62 16G 302 A 1 HETATM 27 H H81 16G . . . D 3 34.43 -48.45 -21.242 1 58.67 ? H81 16G 302 A 1 HETATM 28 H H82 16G . . . D 3 33.17 -48.058 -22.12 1 58.67 ? H82 16G 302 A 1 HETATM 29 H H83 16G . . . D 3 33.097 -49.301 -21.14 1 58.67 ? H83 16G 302 A 1 HETATM 30 H HN2 16G . . . D 3 33.853 -45.767 -20.781 1 68.95 ? HN2 16G 302 A 1 HETATM 31 H HO1 16G . . . D 3 30.31 -45.944 -18.758 1 68.49 ? HO1 16G 302 A 1 HETATM 32 H HO3 16G . . . D 3 34.829 -45.16 -17.064 1 81.35 ? HO3 16G 302 A 1 HETATM 33 H HO4 16G . . . D 3 33.409 -44.779 -15.038 1 75.74 ? HO4 16G 302 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #