data_9F7V # _model_server_result.job_id 6Pbe7p8hN4E3otWsNKCsPw _model_server_result.datetime_utc '2025-02-23 13:21:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 9F7V # _exptl.entry_id 9F7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F7V _cell.length_a 88.366 _cell.length_b 88.366 _cell.length_c 284.455 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,3 B,E,F,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -44.183 -76.527201 47.409167 3 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 44.183 -76.527201 -47.409167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id 16G _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE;N-acetyl-6-O-phosphono-alpha-D-glucosamine;2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 16G sing 1 n n C1 O1 16G sing 2 n n C1 O5 16G sing 3 n n C1 H1 16G sing 4 n n C2 C3 16G sing 5 n n C2 N2 16G sing 6 n n C2 H2 16G sing 7 n n C3 C4 16G sing 8 n n C3 O3 16G sing 9 n n C3 H3 16G sing 10 n n C4 C5 16G sing 11 n n C4 O4 16G sing 12 n n C4 H4 16G sing 13 n n C5 C6 16G sing 14 n n C5 O5 16G sing 15 n n C5 H5 16G sing 16 n n C6 O6 16G sing 17 n n C6 H61 16G sing 18 n n C6 H62 16G sing 19 n n C7 C8 16G sing 20 n n C7 N2 16G sing 21 n n C7 O7 16G doub 22 n n C8 H81 16G sing 23 n n C8 H82 16G sing 24 n n C8 H83 16G sing 25 n n N2 HN2 16G sing 26 n n O1 HO1 16G sing 27 n n O3 HO3 16G sing 28 n n O4 HO4 16G sing 29 n n O6 P 16G sing 30 n n P O1P 16G doub 31 n n P O2P 16G sing 32 n n P O3P 16G sing 33 n n O2P HOP2 16G sing 34 n n O3P HOP3 16G sing 35 n n # _pdbx_chem_comp_identifier.comp_id 16G _pdbx_chem_comp_identifier.identifier a-D-GlcpNAc6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9F7V _atom_sites.fract_transf_matrix[1][1] 0.011317 _atom_sites.fract_transf_matrix[1][2] 0.006534 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 403 SO4 SO4 . D 3 16G A 1 302 999 16G 16G . E 2 SO4 B 1 301 404 SO4 SO4 . F 3 16G B 1 302 999 16G 16G . G 4 HOH A 1 401 30 HOH HOH . G 4 HOH A 2 402 112 HOH HOH . G 4 HOH A 3 403 13 HOH HOH . G 4 HOH A 4 404 113 HOH HOH . G 4 HOH A 5 405 40 HOH HOH . G 4 HOH A 6 406 23 HOH HOH . G 4 HOH A 7 407 88 HOH HOH . G 4 HOH A 8 408 62 HOH HOH . G 4 HOH A 9 409 109 HOH HOH . G 4 HOH A 10 410 93 HOH HOH . G 4 HOH A 11 411 10 HOH HOH . G 4 HOH A 12 412 15 HOH HOH . G 4 HOH A 13 413 22 HOH HOH . G 4 HOH A 14 414 56 HOH HOH . G 4 HOH A 15 415 82 HOH HOH . G 4 HOH A 16 416 7 HOH HOH . G 4 HOH A 17 417 96 HOH HOH . G 4 HOH A 18 418 80 HOH HOH . G 4 HOH A 19 419 58 HOH HOH . G 4 HOH A 20 420 20 HOH HOH . G 4 HOH A 21 421 16 HOH HOH . G 4 HOH A 22 422 84 HOH HOH . G 4 HOH A 23 423 25 HOH HOH . G 4 HOH A 24 424 34 HOH HOH . G 4 HOH A 25 425 27 HOH HOH . G 4 HOH A 26 426 89 HOH HOH . G 4 HOH A 27 427 8 HOH HOH . G 4 HOH A 28 428 31 HOH HOH . G 4 HOH A 29 429 26 HOH HOH . G 4 HOH A 30 430 57 HOH HOH . G 4 HOH A 31 431 14 HOH HOH . G 4 HOH A 32 432 79 HOH HOH . G 4 HOH A 33 433 77 HOH HOH . G 4 HOH A 34 434 87 HOH HOH . G 4 HOH A 35 435 12 HOH HOH . G 4 HOH A 36 436 105 HOH HOH . G 4 HOH A 37 437 11 HOH HOH . G 4 HOH A 38 438 28 HOH HOH . G 4 HOH A 39 439 24 HOH HOH . G 4 HOH A 40 440 64 HOH HOH . G 4 HOH A 41 441 103 HOH HOH . G 4 HOH A 42 442 1 HOH HOH . G 4 HOH A 43 443 69 HOH HOH . G 4 HOH A 44 444 9 HOH HOH . G 4 HOH A 45 445 21 HOH HOH . G 4 HOH A 46 446 32 HOH HOH . G 4 HOH A 47 447 3 HOH HOH . G 4 HOH A 48 448 4 HOH HOH . G 4 HOH A 49 449 86 HOH HOH . G 4 HOH A 50 450 110 HOH HOH . G 4 HOH A 51 451 19 HOH HOH . G 4 HOH A 52 452 75 HOH HOH . G 4 HOH A 53 453 46 HOH HOH . G 4 HOH A 54 454 94 HOH HOH . G 4 HOH A 55 455 5 HOH HOH . G 4 HOH A 56 456 107 HOH HOH . G 4 HOH A 57 457 76 HOH HOH . G 4 HOH A 58 458 108 HOH HOH . G 4 HOH A 59 459 54 HOH HOH . G 4 HOH A 60 460 43 HOH HOH . G 4 HOH A 61 461 97 HOH HOH . G 4 HOH A 62 462 85 HOH HOH . G 4 HOH A 63 463 101 HOH HOH . G 4 HOH A 64 464 102 HOH HOH . G 4 HOH A 65 465 111 HOH HOH . G 4 HOH A 66 466 91 HOH HOH . G 4 HOH A 67 467 99 HOH HOH . G 4 HOH A 68 468 95 HOH HOH . G 4 HOH A 69 469 63 HOH HOH . G 4 HOH A 70 470 92 HOH HOH . G 4 HOH A 71 471 50 HOH HOH . G 4 HOH A 72 472 117 HOH HOH . G 4 HOH A 73 473 81 HOH HOH . G 4 HOH A 74 474 72 HOH HOH . G 4 HOH A 75 475 73 HOH HOH . G 4 HOH A 76 476 115 HOH HOH . G 4 HOH A 77 477 44 HOH HOH . G 4 HOH A 78 478 114 HOH HOH . G 4 HOH A 79 479 100 HOH HOH . G 4 HOH A 80 480 98 HOH HOH . G 4 HOH A 81 481 104 HOH HOH . H 4 HOH B 1 401 37 HOH HOH . H 4 HOH B 2 402 48 HOH HOH . H 4 HOH B 3 403 60 HOH HOH . H 4 HOH B 4 404 41 HOH HOH . H 4 HOH B 5 405 51 HOH HOH . H 4 HOH B 6 406 35 HOH HOH . H 4 HOH B 7 407 52 HOH HOH . H 4 HOH B 8 408 29 HOH HOH . H 4 HOH B 9 409 47 HOH HOH . H 4 HOH B 10 410 38 HOH HOH . H 4 HOH B 11 411 67 HOH HOH . H 4 HOH B 12 412 39 HOH HOH . H 4 HOH B 13 413 83 HOH HOH . H 4 HOH B 14 414 33 HOH HOH . H 4 HOH B 15 415 59 HOH HOH . H 4 HOH B 16 416 6 HOH HOH . H 4 HOH B 17 417 18 HOH HOH . H 4 HOH B 18 418 61 HOH HOH . H 4 HOH B 19 419 45 HOH HOH . H 4 HOH B 20 420 65 HOH HOH . H 4 HOH B 21 421 90 HOH HOH . H 4 HOH B 22 422 17 HOH HOH . H 4 HOH B 23 423 49 HOH HOH . H 4 HOH B 24 424 55 HOH HOH . H 4 HOH B 25 425 2 HOH HOH . H 4 HOH B 26 426 74 HOH HOH . H 4 HOH B 27 427 36 HOH HOH . H 4 HOH B 28 428 116 HOH HOH . H 4 HOH B 29 429 106 HOH HOH . H 4 HOH B 30 430 42 HOH HOH . H 4 HOH B 31 431 53 HOH HOH . H 4 HOH B 32 432 78 HOH HOH . H 4 HOH B 33 433 70 HOH HOH . H 4 HOH B 34 434 66 HOH HOH . H 4 HOH B 35 435 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 16G . . . F 3 6.123 -56.525 12.676 1 64.47 ? C1 16G 302 B 1 HETATM 2 C C2 16G . . . F 3 4.994 -56.127 11.743 1 67.48 ? C2 16G 302 B 1 HETATM 3 C C3 16G . . . F 3 5.445 -55.313 10.592 1 67.01 ? C3 16G 302 B 1 HETATM 4 C C4 16G . . . F 3 6.318 -54.171 11.032 1 59.85 ? C4 16G 302 B 1 HETATM 5 C C5 16G . . . F 3 7.466 -54.629 11.916 1 60.18 ? C5 16G 302 B 1 HETATM 6 C C6 16G . . . F 3 8.23 -53.394 12.35 1 62.29 ? C6 16G 302 B 1 HETATM 7 C C7 16G . . . F 3 4.957 -58.347 10.334 1 59.6 ? C7 16G 302 B 1 HETATM 8 C C8 16G . . . F 3 4.184 -59.609 9.892 1 54.2 ? C8 16G 302 B 1 HETATM 9 N N2 16G . . . F 3 4.301 -57.386 11.262 1 65.04 ? N2 16G 302 B 1 HETATM 10 O O1 16G . . . F 3 6.912 -57.46 12.077 1 68.01 ? O1 16G 302 B 1 HETATM 11 O O3 16G . . . F 3 4.269 -54.776 9.929 1 65.05 ? O3 16G 302 B 1 HETATM 12 O O4 16G . . . F 3 6.866 -53.532 9.884 1 69.86 ? O4 16G 302 B 1 HETATM 13 O O5 16G . . . F 3 6.992 -55.36 13.092 1 60.89 ? O5 16G 302 B 1 HETATM 14 O O6 16G . . . F 3 8.833 -52.843 11.215 1 63.02 ? O6 16G 302 B 1 HETATM 15 O O7 16G . . . F 3 6.057 -58.155 9.935 1 60.88 ? O7 16G 302 B 1 HETATM 16 P P 16G . . . F 3 10.458 -52.427 11.284 1 53.32 ? P 16G 302 B 1 HETATM 17 O O1P 16G . . . F 3 10.58 -50.936 11.483 1 51.71 ? O1P 16G 302 B 1 HETATM 18 O O2P 16G . . . F 3 11.127 -53.135 12.454 1 55.32 ? O2P 16G 302 B 1 HETATM 19 O O3P 16G . . . F 3 11.126 -52.843 9.991 1 56.96 ? O3P 16G 302 B 1 HETATM 20 H H1 16G . . . F 3 5.718 -56.909 13.469 1 77.36 ? H1 16G 302 B 1 HETATM 21 H H2 16G . . . F 3 4.356 -55.588 12.237 1 80.97 ? H2 16G 302 B 1 HETATM 22 H H3 16G . . . F 3 5.942 -55.87 9.973 1 80.42 ? H3 16G 302 B 1 HETATM 23 H H4 16G . . . F 3 5.769 -53.539 11.523 1 71.82 ? H4 16G 302 B 1 HETATM 24 H H5 16G . . . F 3 8.057 -55.215 11.419 1 72.21 ? H5 16G 302 B 1 HETATM 25 H H61 16G . . . F 3 7.621 -52.751 12.745 1 74.74 ? H61 16G 302 B 1 HETATM 26 H H62 16G . . . F 3 8.908 -53.637 12.999 1 74.74 ? H62 16G 302 B 1 HETATM 27 H H81 16G . . . F 3 3.402 -59.346 9.381 1 65.05 ? H81 16G 302 B 1 HETATM 28 H H82 16G . . . F 3 3.907 -60.108 10.676 1 65.05 ? H82 16G 302 B 1 HETATM 29 H H83 16G . . . F 3 4.76 -60.163 9.342 1 65.05 ? H83 16G 302 B 1 HETATM 30 H HN2 16G . . . F 3 3.502 -57.55 11.534 1 78.04 ? HN2 16G 302 B 1 HETATM 31 H HO1 16G . . . F 3 7.186 -58.015 12.66 1 81.62 ? HO1 16G 302 B 1 HETATM 32 H HO3 16G . . . F 3 4.143 -53.974 10.181 1 78.06 ? HO3 16G 302 B 1 HETATM 33 H HO4 16G . . . F 3 6.354 -52.9 9.639 1 83.83 ? HO4 16G 302 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #