data_9F8G # _model_server_result.job_id vili4xUQaRFfcCRMKcICDQ _model_server_result.datetime_utc '2024-11-27 16:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 9F8G # _exptl.entry_id 9F8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.61 _cell.angle_gamma 90 _cell.entry_id 9F8G _cell.length_a 73.46 _cell.length_b 91.115 _cell.length_c 82.684 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc4 A O GLY 44 A GLY 44 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc6 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc7 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 E MG MG . A MG 502 1_555 J O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc9 E MG MG . A MG 502 1_555 J O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc10 E MG MG . A MG 502 1_555 J O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc11 E MG MG . A MG 502 1_555 J O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc12 G O1G GTP . B GTP 501 1_555 H MG MG . B MG 502 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc13 G O2B GTP . B GTP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc14 H MG MG . B MG 502 1_555 K O HOH . B HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9F8G _atom_sites.fract_transf_matrix[1][1] 0.013613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001819 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 CA A 1 503 503 CA CA . G 4 GTP B 1 501 501 GTP GTP . H 5 MG B 1 502 502 MG MG . I 7 A1IBN B 1 503 503 A1IBN PST . J 8 HOH A 1 601 40 HOH HOH . J 8 HOH A 2 602 61 HOH HOH . J 8 HOH A 3 603 148 HOH HOH . J 8 HOH A 4 604 139 HOH HOH . J 8 HOH A 5 605 96 HOH HOH . J 8 HOH A 6 606 23 HOH HOH . J 8 HOH A 7 607 68 HOH HOH . J 8 HOH A 8 608 123 HOH HOH . J 8 HOH A 9 609 150 HOH HOH . J 8 HOH A 10 610 1 HOH HOH . J 8 HOH A 11 611 102 HOH HOH . J 8 HOH A 12 612 124 HOH HOH . J 8 HOH A 13 613 44 HOH HOH . J 8 HOH A 14 614 86 HOH HOH . J 8 HOH A 15 615 151 HOH HOH . J 8 HOH A 16 616 25 HOH HOH . J 8 HOH A 17 617 98 HOH HOH . J 8 HOH A 18 618 161 HOH HOH . J 8 HOH A 19 619 15 HOH HOH . J 8 HOH A 20 620 93 HOH HOH . J 8 HOH A 21 621 3 HOH HOH . J 8 HOH A 22 622 70 HOH HOH . J 8 HOH A 23 623 24 HOH HOH . J 8 HOH A 24 624 48 HOH HOH . J 8 HOH A 25 625 10 HOH HOH . J 8 HOH A 26 626 21 HOH HOH . J 8 HOH A 27 627 72 HOH HOH . J 8 HOH A 28 628 53 HOH HOH . J 8 HOH A 29 629 57 HOH HOH . J 8 HOH A 30 630 69 HOH HOH . J 8 HOH A 31 631 149 HOH HOH . J 8 HOH A 32 632 88 HOH HOH . J 8 HOH A 33 633 129 HOH HOH . J 8 HOH A 34 634 20 HOH HOH . J 8 HOH A 35 635 85 HOH HOH . J 8 HOH A 36 636 147 HOH HOH . J 8 HOH A 37 637 78 HOH HOH . J 8 HOH A 38 638 36 HOH HOH . J 8 HOH A 39 639 100 HOH HOH . J 8 HOH A 40 640 56 HOH HOH . J 8 HOH A 41 641 26 HOH HOH . J 8 HOH A 42 642 99 HOH HOH . J 8 HOH A 43 643 156 HOH HOH . J 8 HOH A 44 644 152 HOH HOH . J 8 HOH A 45 645 11 HOH HOH . J 8 HOH A 46 646 109 HOH HOH . J 8 HOH A 47 647 42 HOH HOH . J 8 HOH A 48 648 75 HOH HOH . J 8 HOH A 49 649 55 HOH HOH . J 8 HOH A 50 650 83 HOH HOH . J 8 HOH A 51 651 73 HOH HOH . J 8 HOH A 52 652 74 HOH HOH . J 8 HOH A 53 653 125 HOH HOH . J 8 HOH A 54 654 158 HOH HOH . J 8 HOH A 55 655 79 HOH HOH . J 8 HOH A 56 656 126 HOH HOH . J 8 HOH A 57 657 77 HOH HOH . J 8 HOH A 58 658 110 HOH HOH . J 8 HOH A 59 659 28 HOH HOH . J 8 HOH A 60 660 108 HOH HOH . J 8 HOH A 61 661 132 HOH HOH . J 8 HOH A 62 662 127 HOH HOH . J 8 HOH A 63 663 101 HOH HOH . J 8 HOH A 64 664 76 HOH HOH . J 8 HOH A 65 665 133 HOH HOH . J 8 HOH A 66 666 107 HOH HOH . J 8 HOH A 67 667 143 HOH HOH . J 8 HOH A 68 668 66 HOH HOH . J 8 HOH A 69 669 87 HOH HOH . J 8 HOH A 70 670 80 HOH HOH . J 8 HOH A 71 671 67 HOH HOH . J 8 HOH A 72 672 140 HOH HOH . K 8 HOH B 1 601 146 HOH HOH . K 8 HOH B 2 602 58 HOH HOH . K 8 HOH B 3 603 134 HOH HOH . K 8 HOH B 4 604 5 HOH HOH . K 8 HOH B 5 605 116 HOH HOH . K 8 HOH B 6 606 51 HOH HOH . K 8 HOH B 7 607 137 HOH HOH . K 8 HOH B 8 608 29 HOH HOH . K 8 HOH B 9 609 157 HOH HOH . K 8 HOH B 10 610 37 HOH HOH . K 8 HOH B 11 611 113 HOH HOH . K 8 HOH B 12 612 14 HOH HOH . K 8 HOH B 13 613 121 HOH HOH . K 8 HOH B 14 614 165 HOH HOH . K 8 HOH B 15 615 27 HOH HOH . K 8 HOH B 16 616 138 HOH HOH . K 8 HOH B 17 617 60 HOH HOH . K 8 HOH B 18 618 131 HOH HOH . K 8 HOH B 19 619 97 HOH HOH . K 8 HOH B 20 620 159 HOH HOH . K 8 HOH B 21 621 89 HOH HOH . K 8 HOH B 22 622 19 HOH HOH . K 8 HOH B 23 623 33 HOH HOH . K 8 HOH B 24 624 103 HOH HOH . K 8 HOH B 25 625 163 HOH HOH . K 8 HOH B 26 626 59 HOH HOH . K 8 HOH B 27 627 164 HOH HOH . K 8 HOH B 28 628 160 HOH HOH . K 8 HOH B 29 629 136 HOH HOH . K 8 HOH B 30 630 54 HOH HOH . K 8 HOH B 31 631 162 HOH HOH . K 8 HOH B 32 632 105 HOH HOH . K 8 HOH B 33 633 104 HOH HOH . K 8 HOH B 34 634 46 HOH HOH . K 8 HOH B 35 635 39 HOH HOH . K 8 HOH B 36 636 90 HOH HOH . K 8 HOH B 37 637 95 HOH HOH . K 8 HOH B 38 638 166 HOH HOH . K 8 HOH B 39 639 114 HOH HOH . K 8 HOH B 40 640 128 HOH HOH . K 8 HOH B 41 641 111 HOH HOH . K 8 HOH B 42 642 155 HOH HOH . K 8 HOH B 43 643 43 HOH HOH . K 8 HOH B 44 644 112 HOH HOH . K 8 HOH B 45 645 115 HOH HOH . K 8 HOH B 46 646 141 HOH HOH . K 8 HOH B 47 647 2 HOH HOH . K 8 HOH B 48 648 71 HOH HOH . K 8 HOH B 49 649 106 HOH HOH . L 8 HOH F 1 201 41 HOH HOH . L 8 HOH F 2 202 16 HOH HOH . L 8 HOH F 3 203 35 HOH HOH . L 8 HOH F 4 204 30 HOH HOH . L 8 HOH F 5 205 49 HOH HOH . L 8 HOH F 6 206 12 HOH HOH . L 8 HOH F 7 207 45 HOH HOH . L 8 HOH F 8 208 50 HOH HOH . L 8 HOH F 9 209 84 HOH HOH . L 8 HOH F 10 210 4 HOH HOH . L 8 HOH F 11 211 119 HOH HOH . L 8 HOH F 12 212 135 HOH HOH . L 8 HOH F 13 213 65 HOH HOH . L 8 HOH F 14 214 153 HOH HOH . L 8 HOH F 15 215 52 HOH HOH . L 8 HOH F 16 216 92 HOH HOH . L 8 HOH F 17 217 9 HOH HOH . L 8 HOH F 18 218 34 HOH HOH . L 8 HOH F 19 219 81 HOH HOH . L 8 HOH F 20 220 6 HOH HOH . L 8 HOH F 21 221 8 HOH HOH . L 8 HOH F 22 222 7 HOH HOH . L 8 HOH F 23 223 13 HOH HOH . L 8 HOH F 24 224 47 HOH HOH . L 8 HOH F 25 225 22 HOH HOH . L 8 HOH F 26 226 154 HOH HOH . L 8 HOH F 27 227 120 HOH HOH . L 8 HOH F 28 228 38 HOH HOH . L 8 HOH F 29 229 91 HOH HOH . L 8 HOH F 30 230 18 HOH HOH . L 8 HOH F 31 231 62 HOH HOH . L 8 HOH F 32 232 82 HOH HOH . L 8 HOH F 33 233 130 HOH HOH . L 8 HOH F 34 234 144 HOH HOH . L 8 HOH F 35 235 63 HOH HOH . L 8 HOH F 36 236 145 HOH HOH . L 8 HOH F 37 237 32 HOH HOH . L 8 HOH F 38 238 142 HOH HOH . L 8 HOH F 39 239 122 HOH HOH . L 8 HOH F 40 240 31 HOH HOH . L 8 HOH F 41 241 94 HOH HOH . L 8 HOH F 42 242 118 HOH HOH . L 8 HOH F 43 243 64 HOH HOH . L 8 HOH F 44 244 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 28.171 _atom_site.Cartn_y -26.366 _atom_site.Cartn_z -12.124 _atom_site.occupancy 0.93 _atom_site.B_iso_or_equiv 47.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #