data_9F8P # _model_server_result.job_id LHswnzeNhWxXYQJMqbVotw _model_server_result.datetime_utc '2025-06-21 18:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 9F8P # _exptl.entry_id 9F8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.68 _cell.angle_gamma 90 _cell.entry_id 9F8P _cell.length_a 54.059 _cell.length_b 69.104 _cell.length_c 54.144 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 181 n n C1 C2 GOL sing 182 n n C1 H11 GOL sing 183 n n C1 H12 GOL sing 184 n n O1 HO1 GOL sing 185 n n C2 O2 GOL sing 186 n n C2 C3 GOL sing 187 n n C2 H2 GOL sing 188 n n O2 HO2 GOL sing 189 n n C3 O3 GOL sing 190 n n C3 H31 GOL sing 191 n n C3 H32 GOL sing 192 n n O3 HO3 GOL sing 193 n n # _atom_sites.entry_id 9F8P _atom_sites.fract_transf_matrix[1][1] 0.018498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003489 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 203 EDO EDO . D 3 GOL A 1 202 211 GOL GOL . E 4 A1IAI A 1 203 213 A1IAI Z23 . F 5 MES A 1 204 214 MES MES . G 3 GOL B 1 201 202 GOL GOL . H 4 A1IAI B 1 202 206 A1IAI Z23 . I 6 HOH A 1 301 381 HOH HOH . I 6 HOH A 2 302 46 HOH HOH . I 6 HOH A 3 303 366 HOH HOH . I 6 HOH A 4 304 63 HOH HOH . I 6 HOH A 5 305 199 HOH HOH . I 6 HOH A 6 306 201 HOH HOH . I 6 HOH A 7 307 119 HOH HOH . I 6 HOH A 8 308 377 HOH HOH . I 6 HOH A 9 309 103 HOH HOH . I 6 HOH A 10 310 47 HOH HOH . I 6 HOH A 11 311 371 HOH HOH . I 6 HOH A 12 312 83 HOH HOH . I 6 HOH A 13 313 97 HOH HOH . I 6 HOH A 14 314 67 HOH HOH . I 6 HOH A 15 315 16 HOH HOH . I 6 HOH A 16 316 139 HOH HOH . I 6 HOH A 17 317 78 HOH HOH . I 6 HOH A 18 318 348 HOH HOH . I 6 HOH A 19 319 111 HOH HOH . I 6 HOH A 20 320 30 HOH HOH . I 6 HOH A 21 321 10 HOH HOH . I 6 HOH A 22 322 50 HOH HOH . I 6 HOH A 23 323 1 HOH HOH . I 6 HOH A 24 324 35 HOH HOH . I 6 HOH A 25 325 162 HOH HOH . I 6 HOH A 26 326 113 HOH HOH . I 6 HOH A 27 327 118 HOH HOH . I 6 HOH A 28 328 48 HOH HOH . I 6 HOH A 29 329 32 HOH HOH . I 6 HOH A 30 330 169 HOH HOH . I 6 HOH A 31 331 71 HOH HOH . I 6 HOH A 32 332 64 HOH HOH . I 6 HOH A 33 333 236 HOH HOH . I 6 HOH A 34 334 123 HOH HOH . I 6 HOH A 35 335 9 HOH HOH . I 6 HOH A 36 336 25 HOH HOH . I 6 HOH A 37 337 370 HOH HOH . I 6 HOH A 38 338 3 HOH HOH . I 6 HOH A 39 339 95 HOH HOH . I 6 HOH A 40 340 68 HOH HOH . I 6 HOH A 41 341 350 HOH HOH . I 6 HOH A 42 342 191 HOH HOH . I 6 HOH A 43 343 388 HOH HOH . I 6 HOH A 44 344 5 HOH HOH . I 6 HOH A 45 345 349 HOH HOH . I 6 HOH A 46 346 184 HOH HOH . I 6 HOH A 47 347 240 HOH HOH . I 6 HOH A 48 348 80 HOH HOH . I 6 HOH A 49 349 40 HOH HOH . I 6 HOH A 50 350 387 HOH HOH . I 6 HOH A 51 351 357 HOH HOH . I 6 HOH A 52 352 89 HOH HOH . I 6 HOH A 53 353 21 HOH HOH . I 6 HOH A 54 354 217 HOH HOH . I 6 HOH A 55 355 206 HOH HOH . I 6 HOH A 56 356 163 HOH HOH . I 6 HOH A 57 357 177 HOH HOH . I 6 HOH A 58 358 122 HOH HOH . I 6 HOH A 59 359 190 HOH HOH . I 6 HOH A 60 360 159 HOH HOH . I 6 HOH A 61 361 54 HOH HOH . I 6 HOH A 62 362 213 HOH HOH . I 6 HOH A 63 363 26 HOH HOH . I 6 HOH A 64 364 62 HOH HOH . I 6 HOH A 65 365 185 HOH HOH . I 6 HOH A 66 366 117 HOH HOH . I 6 HOH A 67 367 334 HOH HOH . I 6 HOH A 68 368 319 HOH HOH . I 6 HOH A 69 369 31 HOH HOH . I 6 HOH A 70 370 120 HOH HOH . I 6 HOH A 71 371 134 HOH HOH . I 6 HOH A 72 372 347 HOH HOH . I 6 HOH A 73 373 96 HOH HOH . I 6 HOH A 74 374 342 HOH HOH . I 6 HOH A 75 375 56 HOH HOH . I 6 HOH A 76 376 133 HOH HOH . I 6 HOH A 77 377 215 HOH HOH . I 6 HOH A 78 378 69 HOH HOH . I 6 HOH A 79 379 72 HOH HOH . I 6 HOH A 80 380 271 HOH HOH . I 6 HOH A 81 381 84 HOH HOH . I 6 HOH A 82 382 210 HOH HOH . I 6 HOH A 83 383 59 HOH HOH . I 6 HOH A 84 384 149 HOH HOH . I 6 HOH A 85 385 44 HOH HOH . I 6 HOH A 86 386 34 HOH HOH . I 6 HOH A 87 387 368 HOH HOH . I 6 HOH A 88 388 362 HOH HOH . I 6 HOH A 89 389 51 HOH HOH . I 6 HOH A 90 390 200 HOH HOH . I 6 HOH A 91 391 355 HOH HOH . I 6 HOH A 92 392 367 HOH HOH . I 6 HOH A 93 393 109 HOH HOH . I 6 HOH A 94 394 391 HOH HOH . I 6 HOH A 95 395 305 HOH HOH . I 6 HOH A 96 396 202 HOH HOH . I 6 HOH A 97 397 49 HOH HOH . I 6 HOH A 98 398 203 HOH HOH . I 6 HOH A 99 399 41 HOH HOH . I 6 HOH A 100 400 61 HOH HOH . I 6 HOH A 101 401 86 HOH HOH . I 6 HOH A 102 402 121 HOH HOH . I 6 HOH A 103 403 137 HOH HOH . I 6 HOH A 104 404 279 HOH HOH . I 6 HOH A 105 405 363 HOH HOH . I 6 HOH A 106 406 13 HOH HOH . I 6 HOH A 107 407 43 HOH HOH . I 6 HOH A 108 408 285 HOH HOH . I 6 HOH A 109 409 324 HOH HOH . I 6 HOH A 110 410 18 HOH HOH . I 6 HOH A 111 411 322 HOH HOH . I 6 HOH A 112 412 110 HOH HOH . I 6 HOH A 113 413 320 HOH HOH . I 6 HOH A 114 414 241 HOH HOH . I 6 HOH A 115 415 131 HOH HOH . I 6 HOH A 116 416 112 HOH HOH . I 6 HOH A 117 417 129 HOH HOH . I 6 HOH A 118 418 354 HOH HOH . I 6 HOH A 119 419 176 HOH HOH . I 6 HOH A 120 420 389 HOH HOH . I 6 HOH A 121 421 316 HOH HOH . I 6 HOH A 122 422 211 HOH HOH . I 6 HOH A 123 423 245 HOH HOH . I 6 HOH A 124 424 369 HOH HOH . I 6 HOH A 125 425 225 HOH HOH . I 6 HOH A 126 426 353 HOH HOH . I 6 HOH A 127 427 98 HOH HOH . I 6 HOH A 128 428 243 HOH HOH . J 6 HOH B 1 301 386 HOH HOH . J 6 HOH B 2 302 60 HOH HOH . J 6 HOH B 3 303 239 HOH HOH . J 6 HOH B 4 304 301 HOH HOH . J 6 HOH B 5 305 379 HOH HOH . J 6 HOH B 6 306 390 HOH HOH . J 6 HOH B 7 307 187 HOH HOH . J 6 HOH B 8 308 393 HOH HOH . J 6 HOH B 9 309 384 HOH HOH . J 6 HOH B 10 310 142 HOH HOH . J 6 HOH B 11 311 73 HOH HOH . J 6 HOH B 12 312 130 HOH HOH . J 6 HOH B 13 313 29 HOH HOH . J 6 HOH B 14 314 100 HOH HOH . J 6 HOH B 15 315 6 HOH HOH . J 6 HOH B 16 316 2 HOH HOH . J 6 HOH B 17 317 107 HOH HOH . J 6 HOH B 18 318 382 HOH HOH . J 6 HOH B 19 319 19 HOH HOH . J 6 HOH B 20 320 101 HOH HOH . J 6 HOH B 21 321 223 HOH HOH . J 6 HOH B 22 322 20 HOH HOH . J 6 HOH B 23 323 165 HOH HOH . J 6 HOH B 24 324 147 HOH HOH . J 6 HOH B 25 325 8 HOH HOH . J 6 HOH B 26 326 273 HOH HOH . J 6 HOH B 27 327 141 HOH HOH . J 6 HOH B 28 328 170 HOH HOH . J 6 HOH B 29 329 374 HOH HOH . J 6 HOH B 30 330 180 HOH HOH . J 6 HOH B 31 331 378 HOH HOH . J 6 HOH B 32 332 356 HOH HOH . J 6 HOH B 33 333 237 HOH HOH . J 6 HOH B 34 334 214 HOH HOH . J 6 HOH B 35 335 235 HOH HOH . J 6 HOH B 36 336 7 HOH HOH . J 6 HOH B 37 337 11 HOH HOH . J 6 HOH B 38 338 81 HOH HOH . J 6 HOH B 39 339 105 HOH HOH . J 6 HOH B 40 340 17 HOH HOH . J 6 HOH B 41 341 76 HOH HOH . J 6 HOH B 42 342 249 HOH HOH . J 6 HOH B 43 343 27 HOH HOH . J 6 HOH B 44 344 228 HOH HOH . J 6 HOH B 45 345 179 HOH HOH . J 6 HOH B 46 346 361 HOH HOH . J 6 HOH B 47 347 39 HOH HOH . J 6 HOH B 48 348 222 HOH HOH . J 6 HOH B 49 349 53 HOH HOH . J 6 HOH B 50 350 4 HOH HOH . J 6 HOH B 51 351 307 HOH HOH . J 6 HOH B 52 352 104 HOH HOH . J 6 HOH B 53 353 364 HOH HOH . J 6 HOH B 54 354 183 HOH HOH . J 6 HOH B 55 355 115 HOH HOH . J 6 HOH B 56 356 58 HOH HOH . J 6 HOH B 57 357 327 HOH HOH . J 6 HOH B 58 358 28 HOH HOH . J 6 HOH B 59 359 90 HOH HOH . J 6 HOH B 60 360 24 HOH HOH . J 6 HOH B 61 361 65 HOH HOH . J 6 HOH B 62 362 14 HOH HOH . J 6 HOH B 63 363 108 HOH HOH . J 6 HOH B 64 364 136 HOH HOH . J 6 HOH B 65 365 306 HOH HOH . J 6 HOH B 66 366 91 HOH HOH . J 6 HOH B 67 367 337 HOH HOH . J 6 HOH B 68 368 145 HOH HOH . J 6 HOH B 69 369 82 HOH HOH . J 6 HOH B 70 370 36 HOH HOH . J 6 HOH B 71 371 106 HOH HOH . J 6 HOH B 72 372 94 HOH HOH . J 6 HOH B 73 373 158 HOH HOH . J 6 HOH B 74 374 57 HOH HOH . J 6 HOH B 75 375 209 HOH HOH . J 6 HOH B 76 376 151 HOH HOH . J 6 HOH B 77 377 280 HOH HOH . J 6 HOH B 78 378 135 HOH HOH . J 6 HOH B 79 379 12 HOH HOH . J 6 HOH B 80 380 99 HOH HOH . J 6 HOH B 81 381 335 HOH HOH . J 6 HOH B 82 382 45 HOH HOH . J 6 HOH B 83 383 114 HOH HOH . J 6 HOH B 84 384 154 HOH HOH . J 6 HOH B 85 385 87 HOH HOH . J 6 HOH B 86 386 55 HOH HOH . J 6 HOH B 87 387 66 HOH HOH . J 6 HOH B 88 388 152 HOH HOH . J 6 HOH B 89 389 372 HOH HOH . J 6 HOH B 90 390 85 HOH HOH . J 6 HOH B 91 391 77 HOH HOH . J 6 HOH B 92 392 70 HOH HOH . J 6 HOH B 93 393 128 HOH HOH . J 6 HOH B 94 394 93 HOH HOH . J 6 HOH B 95 395 116 HOH HOH . J 6 HOH B 96 396 178 HOH HOH . J 6 HOH B 97 397 318 HOH HOH . J 6 HOH B 98 398 37 HOH HOH . J 6 HOH B 99 399 102 HOH HOH . J 6 HOH B 100 400 196 HOH HOH . J 6 HOH B 101 401 383 HOH HOH . J 6 HOH B 102 402 42 HOH HOH . J 6 HOH B 103 403 74 HOH HOH . J 6 HOH B 104 404 125 HOH HOH . J 6 HOH B 105 405 259 HOH HOH . J 6 HOH B 106 406 373 HOH HOH . J 6 HOH B 107 407 275 HOH HOH . J 6 HOH B 108 408 168 HOH HOH . J 6 HOH B 109 409 309 HOH HOH . J 6 HOH B 110 410 15 HOH HOH . J 6 HOH B 111 411 276 HOH HOH . J 6 HOH B 112 412 380 HOH HOH . J 6 HOH B 113 413 172 HOH HOH . J 6 HOH B 114 414 375 HOH HOH . J 6 HOH B 115 415 132 HOH HOH . J 6 HOH B 116 416 173 HOH HOH . J 6 HOH B 117 417 281 HOH HOH . J 6 HOH B 118 418 153 HOH HOH . J 6 HOH B 119 419 150 HOH HOH . J 6 HOH B 120 420 193 HOH HOH . J 6 HOH B 121 421 175 HOH HOH . J 6 HOH B 122 422 188 HOH HOH . J 6 HOH B 123 423 216 HOH HOH . J 6 HOH B 124 424 251 HOH HOH . J 6 HOH B 125 425 392 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . B . D 3 9.116 9.53 21.089 0.42 21.65 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . B . D 3 9.873 9.666 19.933 0.42 23.91 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . B . D 3 8.625 10.94 21.518 0.42 20.34 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . B . D 3 7.912 11.606 20.512 0.42 19.58 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . B . D 3 7.727 10.638 22.771 0.42 19.41 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . B . D 3 7.517 11.855 23.454 0.42 19.1 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . B . D 3 9.616 9.128 21.816 0.42 25.98 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . B . D 3 8.354 8.949 20.945 0.42 25.98 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . B . D 3 9.661 10.415 19.592 0.42 28.7 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . B . D 3 9.373 11.513 21.748 0.42 24.4 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . B . D 3 7.343 12.114 20.888 0.42 23.5 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . B . D 3 8.153 9.956 23.313 0.42 23.29 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . B . D 3 6.891 10.241 22.479 0.42 23.29 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . B . D 3 6.904 12.268 23.034 0.42 22.92 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 1334 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #