data_9F9B # _model_server_result.job_id TdkiksO3Mb1IbBU2E_6_yA _model_server_result.datetime_utc '2025-01-22 17:10:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 9F9B # _exptl.entry_id 9F9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9B _cell.length_a 62.58 _cell.length_b 62.58 _cell.length_c 111.81 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.345 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9B _atom_sites.fract_transf_matrix[1][1] 0.01598 _atom_sites.fract_transf_matrix[1][2] 0.009226 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 311 OLC OLC . J 3 OLC A 1 309 312 OLC OLC . K 2 LI1 A 1 310 313 LI1 LI1 . L 2 LI1 A 1 311 314 LI1 LI1 . M 2 LI1 A 1 312 315 LI1 LI1 . N 2 LI1 A 1 313 316 LI1 LI1 . O 2 LI1 A 1 314 317 LI1 LI1 . P 2 LI1 A 1 315 318 LI1 LI1 . Q 2 LI1 A 1 316 319 LI1 LI1 . R 2 LI1 A 1 317 320 LI1 LI1 . S 4 RET A 1 318 216 RET LYR . T 5 HOH A 1 401 432 HOH HOH . T 5 HOH A 2 402 479 HOH HOH . T 5 HOH A 3 403 403 HOH HOH . T 5 HOH A 4 404 441 HOH HOH . T 5 HOH A 5 405 434 HOH HOH . T 5 HOH A 6 406 402 HOH HOH . T 5 HOH A 7 407 412 HOH HOH . T 5 HOH A 8 408 400 HOH HOH . T 5 HOH A 9 409 486 HOH HOH . T 5 HOH A 10 410 485 HOH HOH . T 5 HOH A 11 411 401 HOH HOH . T 5 HOH A 12 412 404 HOH HOH . T 5 HOH A 13 413 421 HOH HOH . T 5 HOH A 14 414 414 HOH HOH . T 5 HOH A 15 415 417 HOH HOH . T 5 HOH A 16 416 431 HOH HOH . T 5 HOH A 17 417 487 HOH HOH . T 5 HOH A 18 418 416 HOH HOH . T 5 HOH A 19 419 481 HOH HOH . T 5 HOH A 20 420 456 HOH HOH . T 5 HOH A 21 421 478 HOH HOH . T 5 HOH A 22 422 407 HOH HOH . T 5 HOH A 23 423 476 HOH HOH . T 5 HOH A 24 424 415 HOH HOH . T 5 HOH A 25 425 475 HOH HOH . T 5 HOH A 26 426 483 HOH HOH . T 5 HOH A 27 427 411 HOH HOH . T 5 HOH A 28 428 418 HOH HOH . T 5 HOH A 29 429 422 HOH HOH . T 5 HOH A 30 430 420 HOH HOH . T 5 HOH A 31 431 419 HOH HOH . T 5 HOH A 32 432 482 HOH HOH . T 5 HOH A 33 433 480 HOH HOH . T 5 HOH A 34 434 426 HOH HOH . T 5 HOH A 35 435 409 HOH HOH . T 5 HOH A 36 436 484 HOH HOH . T 5 HOH A 37 437 444 HOH HOH . T 5 HOH A 38 438 453 HOH HOH . T 5 HOH A 39 439 452 HOH HOH . T 5 HOH A 40 440 477 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 3 34.347 35.184 36.054 1 94.14 ? C18 OLC 309 A 1 HETATM 2 C C10 OLC . . . J 3 33.488 39.906 28.434 1 86.22 ? C10 OLC 309 A 1 HETATM 3 C C9 OLC . . . J 3 33.018 40.834 27.638 1 80.72 ? C9 OLC 309 A 1 HETATM 4 C C17 OLC . . . J 3 35.61 34.957 35.2 1 104.43 ? C17 OLC 309 A 1 HETATM 5 C C11 OLC . . . J 3 33.32 39.596 29.918 1 85.62 ? C11 OLC 309 A 1 HETATM 6 C C8 OLC . . . J 3 32.875 41.548 26.253 1 77.33 ? C8 OLC 309 A 1 HETATM 7 C C24 OLC . . . J 3 35.775 45.574 14.156 1 117.55 ? C24 OLC 309 A 1 HETATM 8 C C16 OLC . . . J 3 35.268 35.191 33.708 1 88.12 ? C16 OLC 309 A 1 HETATM 9 C C12 OLC . . . J 3 34.657 38.888 30.343 1 85.96 ? C12 OLC 309 A 1 HETATM 10 C C7 OLC . . . J 3 33.759 40.955 25.135 1 75.49 ? C7 OLC 309 A 1 HETATM 11 C C15 OLC . . . J 3 35.629 36.643 33.304 1 77.73 ? C15 OLC 309 A 1 HETATM 12 C C13 OLC . . . J 3 34.619 38.47 31.838 1 106.53 ? C13 OLC 309 A 1 HETATM 13 C C6 OLC . . . J 3 33.647 41.84 23.861 1 80.06 ? C6 OLC 309 A 1 HETATM 14 C C14 OLC . . . J 3 34.978 36.958 31.936 1 86.05 ? C14 OLC 309 A 1 HETATM 15 C C5 OLC . . . J 3 34.538 41.266 22.718 1 58.56 ? C5 OLC 309 A 1 HETATM 16 C C4 OLC . . . J 3 34.443 42.281 21.542 1 86.86 ? C4 OLC 309 A 1 HETATM 17 C C3 OLC . . . J 3 34.858 41.669 20.176 1 73.58 ? C3 OLC 309 A 1 HETATM 18 C C2 OLC . . . J 3 34.275 42.603 19.075 1 94.78 ? C2 OLC 309 A 1 HETATM 19 C C21 OLC . . . J 3 35.787 43.671 15.768 1 100.64 ? C21 OLC 309 A 1 HETATM 20 C C1 OLC . . . J 3 35.312 42.909 17.97 1 103.2 ? C1 OLC 309 A 1 HETATM 21 C C22 OLC . . . J 3 35.011 44.327 14.619 1 124.5 ? C22 OLC 309 A 1 HETATM 22 O O19 OLC . . . J 3 36.445 43.12 18.26 1 106.22 ? O19 OLC 309 A 1 HETATM 23 O O25 OLC . . . J 3 35.618 46.602 15.112 1 105.1 ? O25 OLC 309 A 1 HETATM 24 O O23 OLC . . . J 3 34.891 43.427 13.56 1 136.49 ? O23 OLC 309 A 1 HETATM 25 O O20 OLC . . . J 3 34.899 42.963 16.615 1 116.13 ? O20 OLC 309 A 1 HETATM 26 H H18 OLC . . . J 3 34.562 34.939 37.092 0 112.92 ? H18 OLC 309 A 1 HETATM 27 H H18A OLC . . . J 3 34.044 36.227 35.983 0 112.92 ? H18A OLC 309 A 1 HETATM 28 H H18B OLC . . . J 3 33.543 34.548 35.69 0 112.92 ? H18B OLC 309 A 1 HETATM 29 H H10 OLC . . . J 3 34.5 40.178 28.722 0 103.41 ? H10 OLC 309 A 1 HETATM 30 H H9 OLC . . . J 3 33.835 40.578 26.969 0 96.81 ? H9 OLC 309 A 1 HETATM 31 H H17 OLC . . . J 3 36.389 35.653 35.508 0 125.26 ? H17 OLC 309 A 1 HETATM 32 H H17A OLC . . . J 3 35.963 33.935 35.336 0 125.26 ? H17A OLC 309 A 1 HETATM 33 H H11 OLC . . . J 3 33.176 40.515 30.488 0 102.68 ? H11 OLC 309 A 1 HETATM 34 H H11A OLC . . . J 3 32.469 38.932 30.077 0 102.68 ? H11A OLC 309 A 1 HETATM 35 H H8 OLC . . . J 3 33.145 42.596 26.381 0 92.74 ? H8 OLC 309 A 1 HETATM 36 H H8A OLC . . . J 3 31.834 41.476 25.939 0 92.74 ? H8A OLC 309 A 1 HETATM 37 H H24 OLC . . . J 3 35.38 45.907 13.197 0 141.01 ? H24 OLC 309 A 1 HETATM 38 H H24A OLC . . . J 3 36.832 45.335 14.051 0 141.01 ? H24A OLC 309 A 1 HETATM 39 H H16 OLC . . . J 3 35.837 34.493 33.093 0 105.69 ? H16 OLC 309 A 1 HETATM 40 H H16A OLC . . . J 3 34.202 35.027 33.552 0 105.69 ? H16A OLC 309 A 1 HETATM 41 H H12 OLC . . . J 3 34.8 38 29.729 0 103.1 ? H12 OLC 309 A 1 HETATM 42 H H12A OLC . . . J 3 35.488 39.575 30.187 0 103.1 ? H12A OLC 309 A 1 HETATM 43 H H7 OLC . . . J 3 34.796 40.928 25.468 0 90.54 ? H7 OLC 309 A 1 HETATM 44 H H7A OLC . . . J 3 33.424 39.944 24.905 0 90.54 ? H7A OLC 309 A 1 HETATM 45 H H15 OLC . . . J 3 36.711 36.742 33.226 0 93.22 ? H15 OLC 309 A 1 HETATM 46 H H15A OLC . . . J 3 35.254 37.335 34.056 0 93.22 ? H15A OLC 309 A 1 HETATM 47 H H13 OLC . . . J 3 33.621 38.637 32.241 0 127.78 ? H13 OLC 309 A 1 HETATM 48 H H13A OLC . . . J 3 35.341 39.057 32.402 0 127.78 ? H13A OLC 309 A 1 HETATM 49 H H6 OLC . . . J 3 32.609 41.863 23.53 0 96.02 ? H6 OLC 309 A 1 HETATM 50 H H6A OLC . . . J 3 33.975 42.852 24.098 0 96.02 ? H6A OLC 309 A 1 HETATM 51 H H14 OLC . . . J 3 34.07 36.366 31.826 0 103.21 ? H14 OLC 309 A 1 HETATM 52 H H14A OLC . . . J 3 35.677 36.703 31.139 0 103.21 ? H14A OLC 309 A 1 HETATM 53 H H5 OLC . . . J 3 34.169 40.29 22.405 0 70.22 ? H5 OLC 309 A 1 HETATM 54 H H5A OLC . . . J 3 35.571 41.173 23.053 0 70.22 ? H5A OLC 309 A 1 HETATM 55 H H4 OLC . . . J 3 33.413 42.63 21.468 0 104.18 ? H4 OLC 309 A 1 HETATM 56 H H4A OLC . . . J 3 35.097 43.125 21.758 0 104.18 ? H4A OLC 309 A 1 HETATM 57 H H3 OLC . . . J 3 35.945 41.627 20.098 0 88.24 ? H3 OLC 309 A 1 HETATM 58 H H3A OLC . . . J 3 34.448 40.664 20.074 0 88.24 ? H3A OLC 309 A 1 HETATM 59 H H2 OLC . . . J 3 33.411 42.118 18.623 0 113.68 ? H2 OLC 309 A 1 HETATM 60 H H2A OLC . . . J 3 33.965 43.54 19.536 0 113.68 ? H2A OLC 309 A 1 HETATM 61 H H21 OLC . . . J 3 36.522 42.979 15.357 0 120.71 ? H21 OLC 309 A 1 HETATM 62 H H21A OLC . . . J 3 36.297 44.443 16.344 0 120.71 ? H21A OLC 309 A 1 HETATM 63 H H22 OLC . . . J 3 34.014 44.61 14.957 0 149.35 ? H22 OLC 309 A 1 HETATM 64 H HO25 OLC . . . J 3 34.768 47.003 15.007 0 126.07 ? HO25 OLC 309 A 1 HETATM 65 H HO23 OLC . . . J 3 34.132 43.656 13.037 0 163.73 ? HO23 OLC 309 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 65 #