data_9F9C # _model_server_result.job_id vMmqQmLWYvGqlAdEIKh_Ng _model_server_result.datetime_utc '2025-01-22 15:35:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 9F9C # _exptl.entry_id 9F9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9C _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.336 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9C _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 311 OLC OLC . J 3 OLC A 1 309 312 OLC OLC . K 2 LI1 A 1 310 313 LI1 LI1 . L 2 LI1 A 1 311 314 LI1 LI1 . M 2 LI1 A 1 312 315 LI1 LI1 . N 2 LI1 A 1 313 316 LI1 LI1 . O 2 LI1 A 1 314 317 LI1 LI1 . P 2 LI1 A 1 315 318 LI1 LI1 . Q 2 LI1 A 1 316 319 LI1 LI1 . R 2 LI1 A 1 317 320 LI1 LI1 . S 4 RET A 1 318 216 RET LYR . T 5 HOH A 1 401 432 HOH HOH . T 5 HOH A 2 402 441 HOH HOH . T 5 HOH A 3 403 404 HOH HOH . T 5 HOH A 4 404 475 HOH HOH . T 5 HOH A 5 405 407 HOH HOH . T 5 HOH A 6 406 434 HOH HOH . T 5 HOH A 7 407 402 HOH HOH . T 5 HOH A 8 408 400 HOH HOH . T 5 HOH A 9 409 480 HOH HOH . T 5 HOH A 10 410 476 HOH HOH . T 5 HOH A 11 411 403 HOH HOH . T 5 HOH A 12 412 417 HOH HOH . T 5 HOH A 13 413 488 HOH HOH . T 5 HOH A 14 414 401 HOH HOH . T 5 HOH A 15 415 411 HOH HOH . T 5 HOH A 16 416 456 HOH HOH . T 5 HOH A 17 417 416 HOH HOH . T 5 HOH A 18 418 418 HOH HOH . T 5 HOH A 19 419 415 HOH HOH . T 5 HOH A 20 420 478 HOH HOH . T 5 HOH A 21 421 422 HOH HOH . T 5 HOH A 22 422 494 HOH HOH . T 5 HOH A 23 423 486 HOH HOH . T 5 HOH A 24 424 495 HOH HOH . T 5 HOH A 25 425 487 HOH HOH . T 5 HOH A 26 426 491 HOH HOH . T 5 HOH A 27 427 492 HOH HOH . T 5 HOH A 28 428 414 HOH HOH . T 5 HOH A 29 429 493 HOH HOH . T 5 HOH A 30 430 419 HOH HOH . T 5 HOH A 31 431 482 HOH HOH . T 5 HOH A 32 432 489 HOH HOH . T 5 HOH A 33 433 490 HOH HOH . T 5 HOH A 34 434 496 HOH HOH . T 5 HOH A 35 435 477 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . H 3 6.153 32.31 41.768 1 52.57 ? C18 OLC 307 A 1 HETATM 2 C C10 OLC . . . H 3 7.918 29.359 32.518 1 52.31 ? C10 OLC 307 A 1 HETATM 3 C C9 OLC . . . H 3 7.957 29.155 31.189 1 54.27 ? C9 OLC 307 A 1 HETATM 4 C C17 OLC . . . H 3 5.635 32.442 40.319 1 55.45 ? C17 OLC 307 A 1 HETATM 5 C C11 OLC . . . H 3 6.66 29.599 33.392 1 41.86 ? C11 OLC 307 A 1 HETATM 6 C C8 OLC . . . H 3 7.307 28.994 29.783 1 67.73 ? C8 OLC 307 A 1 HETATM 7 C C24 OLC . . . H 3 4.556 32.57 19.098 1 79.18 ? C24 OLC 307 A 1 HETATM 8 C C16 OLC . . . H 3 6.153 31.252 39.474 1 49.97 ? C16 OLC 307 A 1 HETATM 9 C C12 OLC . . . H 3 7.105 29.947 34.842 1 39.06 ? C12 OLC 307 A 1 HETATM 10 C C7 OLC . . . H 3 7.091 30.383 29.125 1 56.79 ? C7 OLC 307 A 1 HETATM 11 C C15 OLC . . . H 3 5.874 31.517 37.973 1 49.49 ? C15 OLC 307 A 1 HETATM 12 C C13 OLC . . . H 3 5.901 30.522 35.64 1 29.67 ? C13 OLC 307 A 1 HETATM 13 C C6 OLC . . . H 3 6.138 30.207 27.907 1 74.45 ? C6 OLC 307 A 1 HETATM 14 C C14 OLC . . . H 3 6.078 30.213 37.156 1 48.28 ? C14 OLC 307 A 1 HETATM 15 C C5 OLC . . . H 3 5.484 31.565 27.527 1 57.68 ? C5 OLC 307 A 1 HETATM 16 C C4 OLC . . . H 3 4.323 31.296 26.525 1 50.47 ? C4 OLC 307 A 1 HETATM 17 C C3 OLC . . . H 3 4.521 32.101 25.212 1 59.1 ? C3 OLC 307 A 1 HETATM 18 C C2 OLC . . . H 3 3.656 31.442 24.105 1 54.82 ? C2 OLC 307 A 1 HETATM 19 C C21 OLC . . . H 3 2.845 33.183 20.84 1 55 ? C21 OLC 307 A 1 HETATM 20 C C1 OLC . . . H 3 3.183 32.513 23.097 1 69.33 ? C1 OLC 307 A 1 HETATM 21 C C22 OLC . . . H 3 3.059 32.621 19.428 1 82.1 ? C22 OLC 307 A 1 HETATM 22 O O19 OLC . . . H 3 2.436 33.371 23.444 1 84.77 ? O19 OLC 307 A 1 HETATM 23 O O25 OLC . . . H 3 5.061 33.883 18.993 1 84.99 ? O25 OLC 307 A 1 HETATM 24 O O23 OLC . . . H 3 2.529 31.33 19.367 1 87.35 ? O23 OLC 307 A 1 HETATM 25 O O20 OLC . . . H 3 3.639 32.458 21.759 1 62.92 ? O20 OLC 307 A 1 HETATM 26 H H18 OLC . . . H 3 5.797 33.152 42.358 0 63.1 ? H18 OLC 307 A 1 HETATM 27 H H18A OLC . . . H 3 5.785 31.382 42.201 0 63.1 ? H18A OLC 307 A 1 HETATM 28 H H18B OLC . . . H 3 7.241 32.303 41.765 0 63.1 ? H18B OLC 307 A 1 HETATM 29 H H10 OLC . . . H 3 8.015 28.408 33.036 0 62.79 ? H10 OLC 307 A 1 HETATM 30 H H9 OLC . . . H 3 6.955 29.577 31.16 0 65.13 ? H9 OLC 307 A 1 HETATM 31 H H17 OLC . . . H 3 4.546 32.439 40.321 0 66.56 ? H17 OLC 307 A 1 HETATM 32 H H17A OLC . . . H 3 5.995 33.376 39.889 0 66.56 ? H17A OLC 307 A 1 HETATM 33 H H11 OLC . . . H 3 6.081 30.426 32.98 0 50.25 ? H11 OLC 307 A 1 HETATM 34 H H11A OLC . . . H 3 6.047 28.697 33.405 0 50.25 ? H11A OLC 307 A 1 HETATM 35 H H8 OLC . . . H 3 6.345 28.492 29.887 0 81.29 ? H8 OLC 307 A 1 HETATM 36 H H8A OLC . . . H 3 7.962 28.395 29.15 0 81.29 ? H8A OLC 307 A 1 HETATM 37 H H24 OLC . . . H 3 4.702 32.049 18.154 0 95.03 ? H24 OLC 307 A 1 HETATM 38 H H24A OLC . . . H 3 5.084 32.041 19.89 0 95.03 ? H24A OLC 307 A 1 HETATM 39 H H16 OLC . . . H 3 7.226 31.137 39.629 0 59.98 ? H16 OLC 307 A 1 HETATM 40 H H16A OLC . . . H 3 5.641 30.34 39.782 0 59.98 ? H16A OLC 307 A 1 HETATM 41 H H12 OLC . . . H 3 7.468 29.046 35.334 0 46.89 ? H12 OLC 307 A 1 HETATM 42 H H12A OLC . . . H 3 7.903 30.687 34.807 0 46.89 ? H12A OLC 307 A 1 HETATM 43 H H7 OLC . . . H 3 6.643 31.066 29.847 0 68.16 ? H7 OLC 307 A 1 HETATM 44 H H7A OLC . . . H 3 8.047 30.784 28.79 0 68.16 ? H7A OLC 307 A 1 HETATM 45 H H15 OLC . . . H 3 6.56 32.282 37.608 0 59.4 ? H15 OLC 307 A 1 HETATM 46 H H15A OLC . . . H 3 4.849 31.862 37.851 0 59.4 ? H15A OLC 307 A 1 HETATM 47 H H13 OLC . . . H 3 4.979 30.065 35.284 0 35.62 ? H13 OLC 307 A 1 HETATM 48 H H13A OLC . . . H 3 5.852 31.6 35.494 0 35.62 ? H13A OLC 307 A 1 HETATM 49 H H6 OLC . . . H 3 6.709 29.833 27.057 0 89.35 ? H6 OLC 307 A 1 HETATM 50 H H6A OLC . . . H 3 5.357 29.491 28.163 0 89.35 ? H6A OLC 307 A 1 HETATM 51 H H14 OLC . . . H 3 5.342 29.471 37.465 0 57.95 ? H14 OLC 307 A 1 HETATM 52 H H14A OLC . . . H 3 7.081 29.825 37.333 0 57.95 ? H14A OLC 307 A 1 HETATM 53 H H5 OLC . . . H 3 5.092 32.047 28.422 0 69.23 ? H5 OLC 307 A 1 HETATM 54 H H5A OLC . . . H 3 6.227 32.213 27.061 0 69.23 ? H5A OLC 307 A 1 HETATM 55 H H4 OLC . . . H 3 4.295 30.232 26.29 0 60.58 ? H4 OLC 307 A 1 HETATM 56 H H4A OLC . . . H 3 3.38 31.592 26.985 0 60.58 ? H4A OLC 307 A 1 HETATM 57 H H3 OLC . . . H 3 4.207 33.134 25.36 0 70.93 ? H3 OLC 307 A 1 HETATM 58 H H3A OLC . . . H 3 5.572 32.079 24.921 0 70.93 ? H3A OLC 307 A 1 HETATM 59 H H2 OLC . . . H 3 4.248 30.692 23.583 0 65.8 ? H2 OLC 307 A 1 HETATM 60 H H2A OLC . . . H 3 2.788 30.967 24.56 0 65.8 ? H2A OLC 307 A 1 HETATM 61 H H21 OLC . . . H 3 3.133 34.234 20.86 0 66.02 ? H21 OLC 307 A 1 HETATM 62 H H21A OLC . . . H 3 1.794 33.09 21.113 0 66.02 ? H21A OLC 307 A 1 HETATM 63 H H22 OLC . . . H 3 2.559 33.266 18.706 0 98.53 ? H22 OLC 307 A 1 HETATM 64 H HO25 OLC . . . H 3 5.659 33.932 18.262 0 102 ? HO25 OLC 307 A 1 HETATM 65 H HO23 OLC . . . H 3 2.1 31.126 20.188 0 104.84 ? HO23 OLC 307 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 65 #