data_9F9C # _model_server_result.job_id kXMEOb5w8_amWZmIZbuOdg _model_server_result.datetime_utc '2025-01-22 15:40:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":318}' # _entry.id 9F9C # _exptl.entry_id 9F9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9C _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.336 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 437 n n C1 C6 RET sing 438 n n C1 C16 RET sing 439 n n C1 C17 RET sing 440 n n C2 C3 RET sing 441 n n C2 H21 RET sing 442 n n C2 H22 RET sing 443 n n C3 C4 RET sing 444 n n C3 H31 RET sing 445 n n C3 H32 RET sing 446 n n C4 C5 RET sing 447 n n C4 H41 RET sing 448 n n C4 H42 RET sing 449 n n C5 C6 RET doub 450 n n C5 C18 RET sing 451 n n C6 C7 RET sing 452 n n C7 C8 RET doub 453 e n C7 H7 RET sing 454 n n C8 C9 RET sing 455 n n C8 H8 RET sing 456 n n C9 C10 RET doub 457 e n C9 C19 RET sing 458 n n C10 C11 RET sing 459 n n C10 H10 RET sing 460 n n C11 C12 RET doub 461 e n C11 H11 RET sing 462 n n C12 C13 RET sing 463 n n C12 H12 RET sing 464 n n C13 C14 RET doub 465 e n C13 C20 RET sing 466 n n C14 C15 RET sing 467 n n C14 H14 RET sing 468 n n C15 O1 RET doub 469 n n C15 H15 RET sing 470 n n C16 H161 RET sing 471 n n C16 H162 RET sing 472 n n C16 H163 RET sing 473 n n C17 H171 RET sing 474 n n C17 H172 RET sing 475 n n C17 H173 RET sing 476 n n C18 H181 RET sing 477 n n C18 H182 RET sing 478 n n C18 H183 RET sing 479 n n C19 H191 RET sing 480 n n C19 H192 RET sing 481 n n C19 H193 RET sing 482 n n C20 H201 RET sing 483 n n C20 H202 RET sing 484 n n C20 H203 RET sing 485 n n # _atom_sites.entry_id 9F9C _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 311 OLC OLC . J 3 OLC A 1 309 312 OLC OLC . K 2 LI1 A 1 310 313 LI1 LI1 . L 2 LI1 A 1 311 314 LI1 LI1 . M 2 LI1 A 1 312 315 LI1 LI1 . N 2 LI1 A 1 313 316 LI1 LI1 . O 2 LI1 A 1 314 317 LI1 LI1 . P 2 LI1 A 1 315 318 LI1 LI1 . Q 2 LI1 A 1 316 319 LI1 LI1 . R 2 LI1 A 1 317 320 LI1 LI1 . S 4 RET A 1 318 216 RET LYR . T 5 HOH A 1 401 432 HOH HOH . T 5 HOH A 2 402 441 HOH HOH . T 5 HOH A 3 403 404 HOH HOH . T 5 HOH A 4 404 475 HOH HOH . T 5 HOH A 5 405 407 HOH HOH . T 5 HOH A 6 406 434 HOH HOH . T 5 HOH A 7 407 402 HOH HOH . T 5 HOH A 8 408 400 HOH HOH . T 5 HOH A 9 409 480 HOH HOH . T 5 HOH A 10 410 476 HOH HOH . T 5 HOH A 11 411 403 HOH HOH . T 5 HOH A 12 412 417 HOH HOH . T 5 HOH A 13 413 488 HOH HOH . T 5 HOH A 14 414 401 HOH HOH . T 5 HOH A 15 415 411 HOH HOH . T 5 HOH A 16 416 456 HOH HOH . T 5 HOH A 17 417 416 HOH HOH . T 5 HOH A 18 418 418 HOH HOH . T 5 HOH A 19 419 415 HOH HOH . T 5 HOH A 20 420 478 HOH HOH . T 5 HOH A 21 421 422 HOH HOH . T 5 HOH A 22 422 494 HOH HOH . T 5 HOH A 23 423 486 HOH HOH . T 5 HOH A 24 424 495 HOH HOH . T 5 HOH A 25 425 487 HOH HOH . T 5 HOH A 26 426 491 HOH HOH . T 5 HOH A 27 427 492 HOH HOH . T 5 HOH A 28 428 414 HOH HOH . T 5 HOH A 29 429 493 HOH HOH . T 5 HOH A 30 430 419 HOH HOH . T 5 HOH A 31 431 482 HOH HOH . T 5 HOH A 32 432 489 HOH HOH . T 5 HOH A 33 433 490 HOH HOH . T 5 HOH A 34 434 496 HOH HOH . T 5 HOH A 35 435 477 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . S 4 14.957 46.384 29.637 1 22.18 ? C1 RET 318 A 1 HETATM 2 C C2 RET . . . S 4 14.494 47.282 28.481 1 22.01 ? C2 RET 318 A 1 HETATM 3 C C3 RET . . . S 4 15.296 48.571 28.384 1 21.48 ? C3 RET 318 A 1 HETATM 4 C C4 RET . . . S 4 15.124 49.401 29.641 1 18.19 ? C4 RET 318 A 1 HETATM 5 C C5 RET . . . S 4 15.102 48.568 30.893 1 23.4 ? C5 RET 318 A 1 HETATM 6 C C6 RET . . . S 4 15.297 47.24 30.862 1 15.95 ? C6 RET 318 A 1 HETATM 7 C C7 RET . . . S 4 15.768 46.537 32.071 1 16.8 ? C7 RET 318 A 1 HETATM 8 C C8 RET . . . S 4 15.94 45.248 32.353 1 17.34 ? C8 RET 318 A 1 HETATM 9 C C9 RET . . . S 4 16.417 44.699 33.612 1 15.56 ? C9 RET 318 A 1 HETATM 10 C C10 RET . . . S 4 16.609 43.364 33.728 1 13.83 ? C10 RET 318 A 1 HETATM 11 C C11 RET . . . S 4 17.205 42.674 34.82 1 18.06 ? C11 RET 318 A 1 HETATM 12 C C12 RET . . . S 4 17.435 41.36 34.897 1 17.76 ? C12 RET 318 A 1 HETATM 13 C C13 RET . . . S 4 18.302 40.704 35.86 1 30.16 ? C13 RET 318 A 1 HETATM 14 C C14 RET . . . S 4 18.588 39.394 35.691 1 39.11 ? C14 RET 318 A 1 HETATM 15 C C15 RET . . . S 4 17.766 38.28 35.299 1 28.27 ? C15 RET 318 A 1 HETATM 16 C C16 RET . . . S 4 16.187 45.614 29.143 1 20.8 ? C16 RET 318 A 1 HETATM 17 C C17 RET . . . S 4 13.82 45.402 29.944 1 15.62 ? C17 RET 318 A 1 HETATM 18 C C18 RET . . . S 4 14.905 49.372 32.148 1 20.47 ? C18 RET 318 A 1 HETATM 19 C C19 RET . . . S 4 16.816 45.668 34.69 1 15.65 ? C19 RET 318 A 1 HETATM 20 C C20 RET . . . S 4 19.161 41.586 36.722 1 37.98 ? C20 RET 318 A 1 HETATM 21 H H21 RET . . . S 4 14.582 46.803 27.632 1 26.42 ? H21 RET 318 A 1 HETATM 22 H H22 RET . . . S 4 13.544 47.496 28.577 1 26.42 ? H22 RET 318 A 1 HETATM 23 H H31 RET . . . S 4 14.996 49.086 27.609 1 25.8 ? H31 RET 318 A 1 HETATM 24 H H32 RET . . . S 4 16.244 48.374 28.237 1 25.8 ? H32 RET 318 A 1 HETATM 25 H H41 RET . . . S 4 14.286 49.905 29.589 1 21.84 ? H41 RET 318 A 1 HETATM 26 H H42 RET . . . S 4 15.852 50.054 29.685 1 21.84 ? H42 RET 318 A 1 HETATM 27 H H7 RET . . . S 4 16.058 47.168 32.76 1 20.17 ? H7 RET 318 A 1 HETATM 28 H H8 RET . . . S 4 15.806 44.596 31.638 1 20.82 ? H8 RET 318 A 1 HETATM 29 H H10 RET . . . S 4 16.333 42.8 32.977 1 16.61 ? H10 RET 318 A 1 HETATM 30 H H11 RET . . . S 4 17.365 43.192 35.633 1 21.69 ? H11 RET 318 A 1 HETATM 31 H H12 RET . . . S 4 17.001 40.785 34.234 1 21.32 ? H12 RET 318 A 1 HETATM 32 H H14 RET . . . S 4 19.515 39.113 35.832 1 46.95 ? H14 RET 318 A 1 HETATM 33 H H15 RET . . . S 4 16.816 38.431 35.115 1 33.94 ? H15 RET 318 A 1 HETATM 34 H H161 RET . . . S 4 15.986 45.095 28.338 1 24.97 ? H161 RET 318 A 1 HETATM 35 H H162 RET . . . S 4 16.909 46.232 28.909 1 24.97 ? H162 RET 318 A 1 HETATM 36 H H163 RET . . . S 4 16.542 44.994 29.81 1 24.97 ? H163 RET 318 A 1 HETATM 37 H H171 RET . . . S 4 13.033 45.88 30.276 1 18.76 ? H171 RET 318 A 1 HETATM 38 H H172 RET . . . S 4 14.058 44.734 30.618 1 18.76 ? H172 RET 318 A 1 HETATM 39 H H173 RET . . . S 4 13.552 44.926 29.133 1 18.76 ? H173 RET 318 A 1 HETATM 40 H H181 RET . . . S 4 14.306 50.139 32.035 1 24.58 ? H181 RET 318 A 1 HETATM 41 H H182 RET . . . S 4 15.766 49.712 32.467 1 24.58 ? H182 RET 318 A 1 HETATM 42 H H183 RET . . . S 4 14.518 48.808 32.849 1 24.58 ? H183 RET 318 A 1 HETATM 43 H H191 RET . . . S 4 17.602 46.178 34.404 1 18.79 ? H191 RET 318 A 1 HETATM 44 H H192 RET . . . S 4 16.127 46.338 34.882 1 18.79 ? H192 RET 318 A 1 HETATM 45 H H193 RET . . . S 4 17.011 45.224 35.54 1 18.79 ? H193 RET 318 A 1 HETATM 46 H H201 RET . . . S 4 18.703 42.413 36.972 1 45.6 ? H201 RET 318 A 1 HETATM 47 H H202 RET . . . S 4 19.431 41.123 37.542 1 45.6 ? H202 RET 318 A 1 HETATM 48 H H203 RET . . . S 4 19.995 41.828 36.27 1 45.6 ? H203 RET 318 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #