data_9F9D # _model_server_result.job_id NzFRD-RbffqskLyg4TQq0A _model_server_result.datetime_utc '2025-01-22 13:52:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 9F9D # _exptl.entry_id 9F9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9D _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.348 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9D _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 302 LI1 LI1 . C 2 LI1 A 1 302 303 LI1 LI1 . D 2 LI1 A 1 303 305 LI1 LI1 . E 2 LI1 A 1 304 306 LI1 LI1 . F 2 LI1 A 1 305 307 LI1 LI1 . G 2 LI1 A 1 306 308 LI1 LI1 . H 3 OLC A 1 307 309 OLC OLC . I 3 OLC A 1 308 310 OLC OLC . J 3 OLC A 1 309 312 OLC OLC . K 3 OLC A 1 310 313 OLC OLC . L 3 OLC A 1 311 314 OLC OLC . M 2 LI1 A 1 312 316 LI1 LI1 . N 2 LI1 A 1 313 317 LI1 LI1 . O 2 LI1 A 1 314 318 LI1 LI1 . P 2 LI1 A 1 315 319 LI1 LI1 . Q 2 LI1 A 1 316 320 LI1 LI1 . R 2 LI1 A 1 317 321 LI1 LI1 . S 4 RET A 1 318 216 RET LYR . T 5 HOH A 1 401 432 HOH HOH . T 5 HOH A 2 402 480 HOH HOH . T 5 HOH A 3 403 441 HOH HOH . T 5 HOH A 4 404 434 HOH HOH . T 5 HOH A 5 405 482 HOH HOH . T 5 HOH A 6 406 498 HOH HOH . T 5 HOH A 7 407 495 HOH HOH . T 5 HOH A 8 408 485 HOH HOH . T 5 HOH A 9 409 403 HOH HOH . T 5 HOH A 10 410 400 HOH HOH . T 5 HOH A 11 411 489 HOH HOH . T 5 HOH A 12 412 402 HOH HOH . T 5 HOH A 13 413 456 HOH HOH . T 5 HOH A 14 414 404 HOH HOH . T 5 HOH A 15 415 423 HOH HOH . T 5 HOH A 16 416 401 HOH HOH . T 5 HOH A 17 417 411 HOH HOH . T 5 HOH A 18 418 477 HOH HOH . T 5 HOH A 19 419 412 HOH HOH . T 5 HOH A 20 420 478 HOH HOH . T 5 HOH A 21 421 407 HOH HOH . T 5 HOH A 22 422 417 HOH HOH . T 5 HOH A 23 423 409 HOH HOH . T 5 HOH A 24 424 492 HOH HOH . T 5 HOH A 25 425 479 HOH HOH . T 5 HOH A 26 426 426 HOH HOH . T 5 HOH A 27 427 414 HOH HOH . T 5 HOH A 28 428 413 HOH HOH . T 5 HOH A 29 429 416 HOH HOH . T 5 HOH A 30 430 419 HOH HOH . T 5 HOH A 31 431 415 HOH HOH . T 5 HOH A 32 432 421 HOH HOH . T 5 HOH A 33 433 493 HOH HOH . T 5 HOH A 34 434 420 HOH HOH . T 5 HOH A 35 435 486 HOH HOH . T 5 HOH A 36 436 497 HOH HOH . T 5 HOH A 37 437 475 HOH HOH . T 5 HOH A 38 438 422 HOH HOH . T 5 HOH A 39 439 488 HOH HOH . T 5 HOH A 40 440 494 HOH HOH . T 5 HOH A 41 441 418 HOH HOH . T 5 HOH A 42 442 496 HOH HOH . T 5 HOH A 43 443 487 HOH HOH . T 5 HOH A 44 444 491 HOH HOH . T 5 HOH A 45 445 483 HOH HOH . T 5 HOH A 46 446 490 HOH HOH . T 5 HOH A 47 447 484 HOH HOH . T 5 HOH A 48 448 448 HOH HOH . T 5 HOH A 49 449 453 HOH HOH . T 5 HOH A 50 450 452 HOH HOH . T 5 HOH A 51 451 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . H 3 20.235 19.415 32.756 1 70.57 ? C18 OLC 307 A 1 HETATM 2 C C10 OLC . . . H 3 12.755 20.984 35.812 1 53.55 ? C10 OLC 307 A 1 HETATM 3 C C9 OLC . . . H 3 12.204 21.084 37.033 1 57.83 ? C9 OLC 307 A 1 HETATM 4 C C17 OLC . . . H 3 19.456 19.891 34.007 1 72.21 ? C17 OLC 307 A 1 HETATM 5 C C11 OLC . . . H 3 13.203 22.159 34.913 1 62.76 ? C11 OLC 307 A 1 HETATM 6 C C8 OLC . . . H 3 11.646 21.915 38.223 1 60.66 ? C8 OLC 307 A 1 HETATM 7 C C24 OLC . . . H 3 11.266 23.015 49.25 1 71.72 ? C24 OLC 307 A 1 HETATM 8 C C16 OLC . . . H 3 18.478 21.005 33.582 1 65.25 ? C16 OLC 307 A 1 HETATM 9 C C12 OLC . . . H 3 14.678 22.482 35.264 1 65.94 ? C12 OLC 307 A 1 HETATM 10 C C7 OLC . . . H 3 12.313 21.345 39.491 1 65.73 ? C7 OLC 307 A 1 HETATM 11 C C15 OLC . . . H 3 18.025 21.849 34.792 1 62.94 ? C15 OLC 307 A 1 HETATM 12 C C13 OLC . . . H 3 15.584 21.386 34.644 1 64.72 ? C13 OLC 307 A 1 HETATM 13 C C6 OLC . . . H 3 11.877 22.091 40.781 1 67.78 ? C6 OLC 307 A 1 HETATM 14 C C14 OLC . . . H 3 16.849 21.167 35.511 1 63.94 ? C14 OLC 307 A 1 HETATM 15 C C5 OLC . . . H 3 12.134 23.616 40.719 1 55.26 ? C5 OLC 307 A 1 HETATM 16 C C4 OLC . . . H 3 11.618 24.188 42.07 1 47.71 ? C4 OLC 307 A 1 HETATM 17 C C3 OLC . . . H 3 12.731 24.028 43.133 1 51.51 ? C3 OLC 307 A 1 HETATM 18 C C2 OLC . . . H 3 12.214 24.643 44.455 1 44.81 ? C2 OLC 307 A 1 HETATM 19 C C21 OLC . . . H 3 13.275 23.844 48.031 1 52.18 ? C21 OLC 307 A 1 HETATM 20 C C1 OLC . . . H 3 13.085 24.224 45.674 1 49.09 ? C1 OLC 307 A 1 HETATM 21 C C22 OLC . . . H 3 12.38 24.08 49.255 1 62.47 ? C22 OLC 307 A 1 HETATM 22 O O19 OLC . . . H 3 14.249 24.055 45.602 1 52.62 ? O19 OLC 307 A 1 HETATM 23 O O25 OLC . . . H 3 10.3 23.273 50.246 1 63.42 ? O25 OLC 307 A 1 HETATM 24 O O23 OLC . . . H 3 13.174 23.991 50.403 1 80.54 ? O23 OLC 307 A 1 HETATM 25 O O20 OLC . . . H 3 12.458 24.099 46.916 1 50.99 ? O20 OLC 307 A 1 HETATM 26 H H18 OLC . . . H 3 20.77 20.256 32.32 0 84.67 ? H18 OLC 307 A 1 HETATM 27 H H18A OLC . . . H 3 20.946 18.643 33.044 0 84.67 ? H18A OLC 307 A 1 HETATM 28 H H18B OLC . . . H 3 19.537 19.011 32.026 0 84.67 ? H18B OLC 307 A 1 HETATM 29 H H10 OLC . . . H 3 13.808 20.73 35.903 0 64.24 ? H10 OLC 307 A 1 HETATM 30 H H9 OLC . . . H 3 12.544 22.116 37.003 0 69.38 ? H9 OLC 307 A 1 HETATM 31 H H17 OLC . . . H 3 20.154 20.279 34.748 0 86.63 ? H17 OLC 307 A 1 HETATM 32 H H17A OLC . . . H 3 18.901 19.057 34.433 0 86.63 ? H17A OLC 307 A 1 HETATM 33 H H11 OLC . . . H 3 13.124 21.875 33.862 0 75.29 ? H11 OLC 307 A 1 HETATM 34 H H11A OLC . . . H 3 12.576 23.032 35.101 0 75.29 ? H11A OLC 307 A 1 HETATM 35 H H8 OLC . . . H 3 10.563 21.809 38.285 0 72.77 ? H8 OLC 307 A 1 HETATM 36 H H8A OLC . . . H 3 11.902 22.968 38.102 0 72.77 ? H8A OLC 307 A 1 HETATM 37 H H24 OLC . . . H 3 11.71 22.038 49.432 0 86.04 ? H24 OLC 307 A 1 HETATM 38 H H24A OLC . . . H 3 10.78 23.017 48.275 0 86.04 ? H24A OLC 307 A 1 HETATM 39 H H16 OLC . . . H 3 18.973 21.655 32.861 0 78.28 ? H16 OLC 307 A 1 HETATM 40 H H16A OLC . . . H 3 17.602 20.549 33.12 0 78.28 ? H16A OLC 307 A 1 HETATM 41 H H12 OLC . . . H 3 14.947 23.455 34.856 0 79.11 ? H12 OLC 307 A 1 HETATM 42 H H12A OLC . . . H 3 14.804 22.495 36.345 0 79.11 ? H12A OLC 307 A 1 HETATM 43 H H7 OLC . . . H 3 12.04 20.294 39.587 0 78.86 ? H7 OLC 307 A 1 HETATM 44 H H7A OLC . . . H 3 13.394 21.432 39.387 0 78.86 ? H7A OLC 307 A 1 HETATM 45 H H15 OLC . . . H 3 17.712 22.833 34.446 0 75.5 ? H15 OLC 307 A 1 HETATM 46 H H15A OLC . . . H 3 18.857 21.957 35.486 0 75.5 ? H15A OLC 307 A 1 HETATM 47 H H13 OLC . . . H 3 15.884 21.694 33.644 0 77.65 ? H13 OLC 307 A 1 HETATM 48 H H13A OLC . . . H 3 15.025 20.453 34.584 0 77.65 ? H13A OLC 307 A 1 HETATM 49 H H6 OLC . . . H 3 10.81 21.925 40.934 0 81.32 ? H6 OLC 307 A 1 HETATM 50 H H6A OLC . . . H 3 12.432 21.68 41.624 0 81.32 ? H6A OLC 307 A 1 HETATM 51 H H14 OLC . . . H 3 16.707 21.611 36.496 0 76.71 ? H14 OLC 307 A 1 HETATM 52 H H14A OLC . . . H 3 17.047 20.1 35.618 0 76.71 ? H14A OLC 307 A 1 HETATM 53 H H5 OLC . . . H 3 11.588 24.059 39.886 0 66.29 ? H5 OLC 307 A 1 HETATM 54 H H5A OLC . . . H 3 13.199 23.817 40.603 0 66.29 ? H5A OLC 307 A 1 HETATM 55 H H4 OLC . . . H 3 11.372 25.244 41.952 0 57.24 ? H4 OLC 307 A 1 HETATM 56 H H4A OLC . . . H 3 10.729 23.642 42.385 0 57.24 ? H4A OLC 307 A 1 HETATM 57 H H3 OLC . . . H 3 12.956 22.972 43.279 0 61.79 ? H3 OLC 307 A 1 HETATM 58 H H3A OLC . . . H 3 13.631 24.55 42.809 0 61.79 ? H3A OLC 307 A 1 HETATM 59 H H2 OLC . . . H 3 12.231 25.728 44.368 0 53.76 ? H2 OLC 307 A 1 HETATM 60 H H2A OLC . . . H 3 11.192 24.308 44.623 0 53.76 ? H2A OLC 307 A 1 HETATM 61 H H21 OLC . . . H 3 14.126 24.524 48.044 0 62.6 ? H21 OLC 307 A 1 HETATM 62 H H21A OLC . . . H 3 13.633 22.814 48.013 0 62.6 ? H21A OLC 307 A 1 HETATM 63 H H22 OLC . . . H 3 11.916 25.066 49.233 0 74.94 ? H22 OLC 307 A 1 HETATM 64 H HO25 OLC . . . H 3 10.017 22.457 50.633 0 76.08 ? HO25 OLC 307 A 1 HETATM 65 H HO23 OLC . . . H 3 12.627 24.09 51.173 0 96.63 ? HO23 OLC 307 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 65 #