data_9F9E # _model_server_result.job_id qSdywAiQQRTaVB2SBJ2gDw _model_server_result.datetime_utc '2025-01-22 17:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 9F9E # _exptl.entry_id 9F9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9E _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 212 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id Q _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 316 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.341 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9E _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 302 LI1 LI1 . C 2 LI1 A 1 302 303 LI1 LI1 . D 2 LI1 A 1 303 305 LI1 LI1 . E 2 LI1 A 1 304 306 LI1 LI1 . F 2 LI1 A 1 305 307 LI1 LI1 . G 2 LI1 A 1 306 308 LI1 LI1 . H 3 OLC A 1 307 309 OLC OLC . I 3 OLC A 1 308 310 OLC OLC . J 3 OLC A 1 309 311 OLC OLC . K 3 OLC A 1 310 312 OLC OLC . L 2 LI1 A 1 311 313 LI1 LI1 . M 2 LI1 A 1 312 314 LI1 LI1 . N 2 LI1 A 1 313 315 LI1 LI1 . O 2 LI1 A 1 314 316 LI1 LI1 . P 2 LI1 A 1 315 317 LI1 LI1 . Q 4 RET A 1 316 216 RET LYR . R 5 HOH A 1 401 431 HOH HOH . R 5 HOH A 2 402 457 HOH HOH . R 5 HOH A 3 403 442 HOH HOH . R 5 HOH A 4 404 433 HOH HOH . R 5 HOH A 5 405 425 HOH HOH . R 5 HOH A 6 406 403 HOH HOH . R 5 HOH A 7 407 413 HOH HOH . R 5 HOH A 8 408 434 HOH HOH . R 5 HOH A 9 409 432 HOH HOH . R 5 HOH A 10 410 450 HOH HOH . R 5 HOH A 11 411 409 HOH HOH . R 5 HOH A 12 412 475 HOH HOH . R 5 HOH A 13 413 411 HOH HOH . R 5 HOH A 14 414 421 HOH HOH . R 5 HOH A 15 415 439 HOH HOH . R 5 HOH A 16 416 410 HOH HOH . R 5 HOH A 17 417 400 HOH HOH . R 5 HOH A 18 418 480 HOH HOH . R 5 HOH A 19 419 407 HOH HOH . R 5 HOH A 20 420 420 HOH HOH . R 5 HOH A 21 421 477 HOH HOH . R 5 HOH A 22 422 414 HOH HOH . R 5 HOH A 23 423 456 HOH HOH . R 5 HOH A 24 424 469 HOH HOH . R 5 HOH A 25 425 441 HOH HOH . R 5 HOH A 26 426 451 HOH HOH . R 5 HOH A 27 427 402 HOH HOH . R 5 HOH A 28 428 423 HOH HOH . R 5 HOH A 29 429 430 HOH HOH . R 5 HOH A 30 430 478 HOH HOH . R 5 HOH A 31 431 404 HOH HOH . R 5 HOH A 32 432 415 HOH HOH . R 5 HOH A 33 433 418 HOH HOH . R 5 HOH A 34 434 416 HOH HOH . R 5 HOH A 35 435 412 HOH HOH . R 5 HOH A 36 436 427 HOH HOH . R 5 HOH A 37 437 401 HOH HOH . R 5 HOH A 38 438 422 HOH HOH . R 5 HOH A 39 439 467 HOH HOH . R 5 HOH A 40 440 417 HOH HOH . R 5 HOH A 41 441 419 HOH HOH . R 5 HOH A 42 442 436 HOH HOH . R 5 HOH A 43 443 426 HOH HOH . R 5 HOH A 44 444 476 HOH HOH . R 5 HOH A 45 445 464 HOH HOH . R 5 HOH A 46 446 440 HOH HOH . R 5 HOH A 47 447 429 HOH HOH . R 5 HOH A 48 448 428 HOH HOH . R 5 HOH A 49 449 470 HOH HOH . R 5 HOH A 50 450 438 HOH HOH . R 5 HOH A 51 451 481 HOH HOH . R 5 HOH A 52 452 446 HOH HOH . R 5 HOH A 53 453 424 HOH HOH . R 5 HOH A 54 454 466 HOH HOH . R 5 HOH A 55 455 444 HOH HOH . R 5 HOH A 56 456 479 HOH HOH . R 5 HOH A 57 457 462 HOH HOH . R 5 HOH A 58 458 459 HOH HOH . R 5 HOH A 59 459 455 HOH HOH . R 5 HOH A 60 460 448 HOH HOH . R 5 HOH A 61 461 445 HOH HOH . R 5 HOH A 62 462 443 HOH HOH . R 5 HOH A 63 463 449 HOH HOH . R 5 HOH A 64 464 454 HOH HOH . R 5 HOH A 65 465 472 HOH HOH . R 5 HOH A 66 466 447 HOH HOH . R 5 HOH A 67 467 463 HOH HOH . R 5 HOH A 68 468 465 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 3 22.367 54.394 36.235 1 40.77 ? C18 OLC 309 A 1 HETATM 2 C C10 OLC . . . J 3 23.389 55.935 27.724 1 66.39 ? C10 OLC 309 A 1 HETATM 3 C C9 OLC . . . J 3 23.593 56.34 26.458 1 84.01 ? C9 OLC 309 A 1 HETATM 4 C C17 OLC . . . J 3 22.007 53.597 34.962 1 50.84 ? C17 OLC 309 A 1 HETATM 5 C C11 OLC . . . J 3 23.002 56.787 28.962 1 60.18 ? C11 OLC 309 A 1 HETATM 6 C C8 OLC . . . J 3 23.693 57.414 25.334 1 91.3 ? C8 OLC 309 A 1 HETATM 7 C C24 OLC . . . J 3 29.472 55.802 20.832 1 68.54 ? C24 OLC 309 A 1 HETATM 8 C C16 OLC . . . J 3 21.883 54.568 33.764 1 55.13 ? C16 OLC 309 A 1 HETATM 9 C C12 OLC . . . J 3 21.724 56.156 29.579 1 58.64 ? C12 OLC 309 A 1 HETATM 10 C C7 OLC . . . J 3 24.89 57.064 24.408 1 70.64 ? C7 OLC 309 A 1 HETATM 11 C C15 OLC . . . J 3 21.069 53.904 32.625 1 53.24 ? C15 OLC 309 A 1 HETATM 12 C C13 OLC . . . J 3 22.022 55.609 31 1 65.82 ? C13 OLC 309 A 1 HETATM 13 C C6 OLC . . . J 3 24.846 57.819 23.043 1 80.16 ? C6 OLC 309 A 1 HETATM 14 C C14 OLC . . . J 3 20.717 54.981 31.565 1 56.76 ? C14 OLC 309 A 1 HETATM 15 C C5 OLC . . . J 3 23.453 57.773 22.348 1 71.17 ? C5 OLC 309 A 1 HETATM 16 C C4 OLC . . . J 3 23.603 58.408 20.937 1 52.85 ? C4 OLC 309 A 1 HETATM 17 C C3 OLC . . . J 3 23.887 57.262 19.931 1 49.65 ? C3 OLC 309 A 1 HETATM 18 C C2 OLC . . . J 3 24.46 57.831 18.607 1 48.44 ? C2 OLC 309 A 1 HETATM 19 C C21 OLC . . . J 3 27.194 55.97 19.781 1 83.76 ? C21 OLC 309 A 1 HETATM 20 C C1 OLC . . . J 3 25.987 57.589 18.577 1 75.02 ? C1 OLC 309 A 1 HETATM 21 C C22 OLC . . . J 3 28.672 56.353 19.646 1 76.52 ? C22 OLC 309 A 1 HETATM 22 O O19 OLC . . . J 3 26.726 58.521 18.58 1 84.56 ? O19 OLC 309 A 1 HETATM 23 O O25 OLC . . . J 3 29.098 56.486 22.006 1 67.44 ? O25 OLC 309 A 1 HETATM 24 O O23 OLC . . . J 3 29.184 55.84 18.454 1 83.2 ? O23 OLC 309 A 1 HETATM 25 O O20 OLC . . . J 3 26.535 56.285 18.566 1 78.63 ? O20 OLC 309 A 1 HETATM 26 H H18 OLC . . . J 3 23.31 54.915 36.082 0 48.93 ? H18 OLC 309 A 1 HETATM 27 H H18A OLC . . . J 3 21.583 55.119 36.444 0 48.93 ? H18A OLC 309 A 1 HETATM 28 H H18B OLC . . . J 3 22.463 53.711 37.076 0 48.93 ? H18B OLC 309 A 1 HETATM 29 H H10 OLC . . . J 3 22.397 55.5 27.809 0 79.66 ? H10 OLC 309 A 1 HETATM 30 H H9 OLC . . . J 3 23.084 57.259 26.736 0 100.81 ? H9 OLC 309 A 1 HETATM 31 H H17 OLC . . . J 3 21.058 53.083 35.112 0 61.01 ? H17 OLC 309 A 1 HETATM 32 H H17A OLC . . . J 3 22.787 52.866 34.758 0 61.01 ? H17A OLC 309 A 1 HETATM 33 H H11 OLC . . . J 3 22.802 57.815 28.66 0 72.21 ? H11 OLC 309 A 1 HETATM 34 H H11A OLC . . . J 3 23.813 56.774 29.692 0 72.21 ? H11A OLC 309 A 1 HETATM 35 H H8 OLC . . . J 3 23.851 58.396 25.78 0 109.56 ? H8 OLC 309 A 1 HETATM 36 H H8A OLC . . . J 3 22.771 57.423 24.753 0 109.56 ? H8A OLC 309 A 1 HETATM 37 H H24 OLC . . . J 3 30.536 55.946 20.651 0 82.25 ? H24 OLC 309 A 1 HETATM 38 H H24A OLC . . . J 3 29.264 54.74 20.948 0 82.25 ? H24A OLC 309 A 1 HETATM 39 H H16 OLC . . . J 3 21.377 55.478 34.087 0 66.16 ? H16 OLC 309 A 1 HETATM 40 H H16A OLC . . . J 3 22.879 54.818 33.398 0 66.16 ? H16A OLC 309 A 1 HETATM 41 H H12 OLC . . . J 3 20.944 56.914 29.642 0 70.37 ? H12 OLC 309 A 1 HETATM 42 H H12A OLC . . . J 3 21.385 55.339 28.944 0 70.37 ? H12A OLC 309 A 1 HETATM 43 H H7 OLC . . . J 3 25.815 57.328 24.921 0 84.76 ? H7 OLC 309 A 1 HETATM 44 H H7A OLC . . . J 3 24.876 55.992 24.213 0 84.76 ? H7A OLC 309 A 1 HETATM 45 H H15 OLC . . . J 3 20.153 53.477 33.031 0 63.89 ? H15 OLC 309 A 1 HETATM 46 H H15A OLC . . . J 3 21.662 53.116 32.163 0 63.89 ? H15A OLC 309 A 1 HETATM 47 H H13 OLC . . . J 3 22.348 56.423 31.646 0 78.98 ? H13 OLC 309 A 1 HETATM 48 H H13A OLC . . . J 3 22.802 54.852 30.946 0 78.98 ? H13A OLC 309 A 1 HETATM 49 H H6 OLC . . . J 3 25.11 58.862 23.217 0 96.2 ? H6 OLC 309 A 1 HETATM 50 H H6A OLC . . . J 3 25.58 57.365 22.376 0 96.2 ? H6A OLC 309 A 1 HETATM 51 H H14 OLC . . . J 3 20.111 55.76 32.028 0 68.11 ? H14 OLC 309 A 1 HETATM 52 H H14A OLC . . . J 3 20.156 54.519 30.752 0 68.11 ? H14A OLC 309 A 1 HETATM 53 H H5 OLC . . . J 3 22.728 58.338 22.933 0 85.4 ? H5 OLC 309 A 1 HETATM 54 H H5A OLC . . . J 3 23.119 56.739 22.254 0 85.4 ? H5A OLC 309 A 1 HETATM 55 H H4 OLC . . . J 3 22.683 58.924 20.663 0 63.41 ? H4 OLC 309 A 1 HETATM 56 H H4A OLC . . . J 3 24.431 59.117 20.936 0 63.41 ? H4A OLC 309 A 1 HETATM 57 H H3 OLC . . . J 3 24.61 56.572 20.367 0 59.59 ? H3 OLC 309 A 1 HETATM 58 H H3A OLC . . . J 3 22.959 56.731 19.721 0 59.59 ? H3A OLC 309 A 1 HETATM 59 H H2 OLC . . . J 3 23.993 57.328 17.761 0 58.13 ? H2 OLC 309 A 1 HETATM 60 H H2A OLC . . . J 3 24.258 58.9 18.55 0 58.13 ? H2A OLC 309 A 1 HETATM 61 H H21 OLC . . . J 3 27.107 54.902 19.979 0 100.51 ? H21 OLC 309 A 1 HETATM 62 H H21A OLC . . . J 3 26.742 56.529 20.6 0 100.51 ? H21A OLC 309 A 1 HETATM 63 H H22 OLC . . . J 3 28.757 57.439 19.638 0 91.82 ? H22 OLC 309 A 1 HETATM 64 H HO25 OLC . . . J 3 28.614 55.902 22.572 0 80.92 ? HO25 OLC 309 A 1 HETATM 65 H HO23 OLC . . . J 3 29.753 56.485 18.054 0 99.84 ? HO23 OLC 309 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 65 #