data_9F9G # _model_server_result.job_id CJhm8CbPEU2GQE81Ui6ENg _model_server_result.datetime_utc '2025-01-22 16:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 9F9G # _exptl.entry_id 9F9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9G _cell.length_a 62.32 _cell.length_b 62.32 _cell.length_c 111.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.16 53.970703 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.16 53.970703 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.35 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9G _atom_sites.fract_transf_matrix[1][1] 0.016046 _atom_sites.fract_transf_matrix[1][2] 0.009264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 302 LI1 LI1 . C 2 LI1 A 1 302 303 LI1 LI1 . D 2 LI1 A 1 303 305 LI1 LI1 . E 2 LI1 A 1 304 306 LI1 LI1 . F 2 LI1 A 1 305 307 LI1 LI1 . G 2 LI1 A 1 306 308 LI1 LI1 . H 3 OLC A 1 307 309 OLC OLC . I 3 OLC A 1 308 310 OLC OLC . J 3 OLC A 1 309 312 OLC OLC . K 3 OLC A 1 310 313 OLC OLC . L 3 OLC A 1 311 314 OLC OLC . M 2 LI1 A 1 312 316 LI1 LI1 . N 2 LI1 A 1 313 317 LI1 LI1 . O 2 LI1 A 1 314 318 LI1 LI1 . P 2 LI1 A 1 315 319 LI1 LI1 . Q 2 LI1 A 1 316 320 LI1 LI1 . R 2 LI1 A 1 317 321 LI1 LI1 . S 4 RET A 1 318 216 RET LYR . T 5 HOH A 1 401 480 HOH HOH . T 5 HOH A 2 402 441 HOH HOH . T 5 HOH A 3 403 482 HOH HOH . T 5 HOH A 4 404 403 HOH HOH . T 5 HOH A 5 405 404 HOH HOH . T 5 HOH A 6 406 486 HOH HOH . T 5 HOH A 7 407 493 HOH HOH . T 5 HOH A 8 408 402 HOH HOH . T 5 HOH A 9 409 511 HOH HOH . T 5 HOH A 10 410 434 HOH HOH . T 5 HOH A 11 411 401 HOH HOH . T 5 HOH A 12 412 400 HOH HOH . T 5 HOH A 13 413 495 HOH HOH . T 5 HOH A 14 414 411 HOH HOH . T 5 HOH A 15 415 414 HOH HOH . T 5 HOH A 16 416 504 HOH HOH . T 5 HOH A 17 417 456 HOH HOH . T 5 HOH A 18 418 485 HOH HOH . T 5 HOH A 19 419 510 HOH HOH . T 5 HOH A 20 420 407 HOH HOH . T 5 HOH A 21 421 477 HOH HOH . T 5 HOH A 22 422 412 HOH HOH . T 5 HOH A 23 423 409 HOH HOH . T 5 HOH A 24 424 502 HOH HOH . T 5 HOH A 25 425 417 HOH HOH . T 5 HOH A 26 426 478 HOH HOH . T 5 HOH A 27 427 421 HOH HOH . T 5 HOH A 28 428 487 HOH HOH . T 5 HOH A 29 429 479 HOH HOH . T 5 HOH A 30 430 416 HOH HOH . T 5 HOH A 31 431 415 HOH HOH . T 5 HOH A 32 432 419 HOH HOH . T 5 HOH A 33 433 503 HOH HOH . T 5 HOH A 34 434 505 HOH HOH . T 5 HOH A 35 435 509 HOH HOH . T 5 HOH A 36 436 507 HOH HOH . T 5 HOH A 37 437 420 HOH HOH . T 5 HOH A 38 438 418 HOH HOH . T 5 HOH A 39 439 413 HOH HOH . T 5 HOH A 40 440 422 HOH HOH . T 5 HOH A 41 441 475 HOH HOH . T 5 HOH A 42 442 496 HOH HOH . T 5 HOH A 43 443 506 HOH HOH . T 5 HOH A 44 444 501 HOH HOH . T 5 HOH A 45 445 484 HOH HOH . T 5 HOH A 46 446 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 3 34.276 35.811 35.643 1 57.68 ? C18 OLC 309 A 1 HETATM 2 C C10 OLC . . . J 3 32.506 39.852 28.103 1 66.43 ? C10 OLC 309 A 1 HETATM 3 C C9 OLC . . . J 3 32.855 40.929 27.394 1 65.89 ? C9 OLC 309 A 1 HETATM 4 C C17 OLC . . . J 3 35.537 35.459 34.817 1 67 ? C17 OLC 309 A 1 HETATM 5 C C11 OLC . . . J 3 32.638 39.613 29.628 1 64.38 ? C11 OLC 309 A 1 HETATM 6 C C8 OLC . . . J 3 33.018 41.736 26.065 1 55.4 ? C8 OLC 309 A 1 HETATM 7 C C24 OLC . . . J 3 35.494 45.477 14.847 1 76.29 ? C24 OLC 309 A 1 HETATM 8 C C16 OLC . . . J 3 35.255 35.597 33.298 1 63.65 ? C16 OLC 309 A 1 HETATM 9 C C12 OLC . . . J 3 34.059 39.002 29.832 1 64.58 ? C12 OLC 309 A 1 HETATM 10 C C7 OLC . . . J 3 34.088 41.028 25.139 1 57.38 ? C7 OLC 309 A 1 HETATM 11 C C15 OLC . . . J 3 35.656 37.011 32.794 1 50.33 ? C15 OLC 309 A 1 HETATM 12 C C13 OLC . . . J 3 34.315 38.627 31.326 1 69.98 ? C13 OLC 309 A 1 HETATM 13 C C6 OLC . . . J 3 33.37 40.699 23.82 1 62.65 ? C6 OLC 309 A 1 HETATM 14 C C14 OLC . . . J 3 34.996 37.22 31.396 1 60.41 ? C14 OLC 309 A 1 HETATM 15 C C5 OLC . . . J 3 34.425 40.284 22.776 1 50.12 ? C5 OLC 309 A 1 HETATM 16 C C4 OLC . . . J 3 34.818 41.549 21.961 1 50.78 ? C4 OLC 309 A 1 HETATM 17 C C3 OLC . . . J 3 34.472 41.377 20.456 1 49.83 ? C3 OLC 309 A 1 HETATM 18 C C2 OLC . . . J 3 34.197 42.772 19.828 1 70.6 ? C2 OLC 309 A 1 HETATM 19 C C21 OLC . . . J 3 35.499 43.539 16.378 1 66.58 ? C21 OLC 309 A 1 HETATM 20 C C1 OLC . . . J 3 35.01 42.897 18.52 1 71.08 ? C1 OLC 309 A 1 HETATM 21 C C22 OLC . . . J 3 34.999 44.035 15.025 1 81.15 ? C22 OLC 309 A 1 HETATM 22 O O19 OLC . . . J 3 36.175 42.648 18.542 1 74.72 ? O19 OLC 309 A 1 HETATM 23 O O25 OLC . . . J 3 35.04 46.248 15.939 1 71.27 ? O25 OLC 309 A 1 HETATM 24 O O23 OLC . . . J 3 35.528 43.198 14.037 1 82.22 ? O23 OLC 309 A 1 HETATM 25 O O20 OLC . . . J 3 34.446 43.334 17.301 1 74.67 ? O20 OLC 309 A 1 HETATM 26 H H18 OLC . . . J 3 34.473 35.632 36.698 0 69.21 ? H18 OLC 309 A 1 HETATM 27 H H18A OLC . . . J 3 34.025 36.859 35.494 0 69.21 ? H18A OLC 309 A 1 HETATM 28 H H18B OLC . . . J 3 33.445 35.189 35.318 0 69.21 ? H18B OLC 309 A 1 HETATM 29 H H10 OLC . . . J 3 33.27 39.086 27.995 0 79.71 ? H10 OLC 309 A 1 HETATM 30 H H9 OLC . . . J 3 32.227 40.529 26.602 0 79.07 ? H9 OLC 309 A 1 HETATM 31 H H17 OLC . . . J 3 36.345 36.135 35.094 0 80.4 ? H17 OLC 309 A 1 HETATM 32 H H17A OLC . . . J 3 35.832 34.434 35.034 0 80.4 ? H17A OLC 309 A 1 HETATM 33 H H11 OLC . . . J 3 32.546 40.555 30.171 0 77.25 ? H11 OLC 309 A 1 HETATM 34 H H11A OLC . . . J 3 31.871 38.918 29.973 0 77.25 ? H11A OLC 309 A 1 HETATM 35 H H8 OLC . . . J 3 33.351 42.748 26.294 0 66.48 ? H8 OLC 309 A 1 HETATM 36 H H8A OLC . . . J 3 32.061 41.777 25.546 0 66.48 ? H8A OLC 309 A 1 HETATM 37 H H24 OLC . . . J 3 35.099 45.888 13.919 0 91.55 ? H24 OLC 309 A 1 HETATM 38 H H24A OLC . . . J 3 36.582 45.49 14.815 0 91.55 ? H24A OLC 309 A 1 HETATM 39 H H16 OLC . . . J 3 35.832 34.847 32.757 0 76.39 ? H16 OLC 309 A 1 HETATM 40 H H16A OLC . . . J 3 34.192 35.44 33.115 0 76.39 ? H16A OLC 309 A 1 HETATM 41 H H12 OLC . . . J 3 34.148 38.105 29.222 0 77.5 ? H12 OLC 309 A 1 HETATM 42 H H12A OLC . . . J 3 34.805 39.731 29.518 0 77.5 ? H12A OLC 309 A 1 HETATM 43 H H7 OLC . . . J 3 34.928 41.698 24.955 0 68.86 ? H7 OLC 309 A 1 HETATM 44 H H7A OLC . . . J 3 34.448 40.114 25.611 0 68.86 ? H7A OLC 309 A 1 HETATM 45 H H15 OLC . . . J 3 36.739 37.08 32.706 0 60.39 ? H15 OLC 309 A 1 HETATM 46 H H15A OLC . . . J 3 35.299 37.768 33.49 0 60.39 ? H15A OLC 309 A 1 HETATM 47 H H13 OLC . . . J 3 33.368 38.6 31.862 0 83.98 ? H13 OLC 309 A 1 HETATM 48 H H13A OLC . . . J 3 34.969 39.37 31.781 0 83.98 ? H13A OLC 309 A 1 HETATM 49 H H6 OLC . . . J 3 32.668 39.88 23.978 0 75.18 ? H6 OLC 309 A 1 HETATM 50 H H6A OLC . . . J 3 32.83 41.577 23.466 0 75.18 ? H6A OLC 309 A 1 HETATM 51 H H14 OLC . . . J 3 34.244 36.448 31.234 0 72.49 ? H14 OLC 309 A 1 HETATM 52 H H14A OLC . . . J 3 35.76 37.15 30.622 0 72.49 ? H14A OLC 309 A 1 HETATM 53 H H5 OLC . . . J 3 34.008 39.529 22.109 0 60.15 ? H5 OLC 309 A 1 HETATM 54 H H5A OLC . . . J 3 35.303 39.879 23.279 0 60.15 ? H5A OLC 309 A 1 HETATM 55 H H4 OLC . . . J 3 34.276 42.408 22.355 0 60.94 ? H4 OLC 309 A 1 HETATM 56 H H4A OLC . . . J 3 35.89 41.718 22.062 0 60.94 ? H4A OLC 309 A 1 HETATM 57 H H3 OLC . . . J 3 35.309 40.905 19.942 0 59.8 ? H3 OLC 309 A 1 HETATM 58 H H3A OLC . . . J 3 33.584 40.752 20.356 0 59.8 ? H3A OLC 309 A 1 HETATM 59 H H2 OLC . . . J 3 33.135 42.873 19.61 0 84.72 ? H2 OLC 309 A 1 HETATM 60 H H2A OLC . . . J 3 34.501 43.553 20.523 0 84.72 ? H2A OLC 309 A 1 HETATM 61 H H21 OLC . . . J 3 36.025 42.595 16.232 0 79.89 ? H21 OLC 309 A 1 HETATM 62 H H21A OLC . . . J 3 36.186 44.277 16.789 0 79.89 ? H21A OLC 309 A 1 HETATM 63 H H22 OLC . . . J 3 33.912 44.019 14.957 0 97.38 ? H22 OLC 309 A 1 HETATM 64 H HO25 OLC . . . J 3 34.157 45.993 16.158 0 85.52 ? HO25 OLC 309 A 1 HETATM 65 H HO23 OLC . . . J 3 36.47 43.297 14.007 0 98.67 ? HO23 OLC 309 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 65 #