data_9F9G # _model_server_result.job_id QniVkouKIDDyp87yexpOFw _model_server_result.datetime_utc '2025-01-22 17:08:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":318}' # _entry.id 9F9G # _exptl.entry_id 9F9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9G _cell.length_a 62.32 _cell.length_b 62.32 _cell.length_c 111.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.16 53.970703 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.16 53.970703 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.35 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 437 n n C1 C6 RET sing 438 n n C1 C16 RET sing 439 n n C1 C17 RET sing 440 n n C2 C3 RET sing 441 n n C2 H21 RET sing 442 n n C2 H22 RET sing 443 n n C3 C4 RET sing 444 n n C3 H31 RET sing 445 n n C3 H32 RET sing 446 n n C4 C5 RET sing 447 n n C4 H41 RET sing 448 n n C4 H42 RET sing 449 n n C5 C6 RET doub 450 n n C5 C18 RET sing 451 n n C6 C7 RET sing 452 n n C7 C8 RET doub 453 e n C7 H7 RET sing 454 n n C8 C9 RET sing 455 n n C8 H8 RET sing 456 n n C9 C10 RET doub 457 e n C9 C19 RET sing 458 n n C10 C11 RET sing 459 n n C10 H10 RET sing 460 n n C11 C12 RET doub 461 e n C11 H11 RET sing 462 n n C12 C13 RET sing 463 n n C12 H12 RET sing 464 n n C13 C14 RET doub 465 e n C13 C20 RET sing 466 n n C14 C15 RET sing 467 n n C14 H14 RET sing 468 n n C15 O1 RET doub 469 n n C15 H15 RET sing 470 n n C16 H161 RET sing 471 n n C16 H162 RET sing 472 n n C16 H163 RET sing 473 n n C17 H171 RET sing 474 n n C17 H172 RET sing 475 n n C17 H173 RET sing 476 n n C18 H181 RET sing 477 n n C18 H182 RET sing 478 n n C18 H183 RET sing 479 n n C19 H191 RET sing 480 n n C19 H192 RET sing 481 n n C19 H193 RET sing 482 n n C20 H201 RET sing 483 n n C20 H202 RET sing 484 n n C20 H203 RET sing 485 n n # _atom_sites.entry_id 9F9G _atom_sites.fract_transf_matrix[1][1] 0.016046 _atom_sites.fract_transf_matrix[1][2] 0.009264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 302 LI1 LI1 . C 2 LI1 A 1 302 303 LI1 LI1 . D 2 LI1 A 1 303 305 LI1 LI1 . E 2 LI1 A 1 304 306 LI1 LI1 . F 2 LI1 A 1 305 307 LI1 LI1 . G 2 LI1 A 1 306 308 LI1 LI1 . H 3 OLC A 1 307 309 OLC OLC . I 3 OLC A 1 308 310 OLC OLC . J 3 OLC A 1 309 312 OLC OLC . K 3 OLC A 1 310 313 OLC OLC . L 3 OLC A 1 311 314 OLC OLC . M 2 LI1 A 1 312 316 LI1 LI1 . N 2 LI1 A 1 313 317 LI1 LI1 . O 2 LI1 A 1 314 318 LI1 LI1 . P 2 LI1 A 1 315 319 LI1 LI1 . Q 2 LI1 A 1 316 320 LI1 LI1 . R 2 LI1 A 1 317 321 LI1 LI1 . S 4 RET A 1 318 216 RET LYR . T 5 HOH A 1 401 480 HOH HOH . T 5 HOH A 2 402 441 HOH HOH . T 5 HOH A 3 403 482 HOH HOH . T 5 HOH A 4 404 403 HOH HOH . T 5 HOH A 5 405 404 HOH HOH . T 5 HOH A 6 406 486 HOH HOH . T 5 HOH A 7 407 493 HOH HOH . T 5 HOH A 8 408 402 HOH HOH . T 5 HOH A 9 409 511 HOH HOH . T 5 HOH A 10 410 434 HOH HOH . T 5 HOH A 11 411 401 HOH HOH . T 5 HOH A 12 412 400 HOH HOH . T 5 HOH A 13 413 495 HOH HOH . T 5 HOH A 14 414 411 HOH HOH . T 5 HOH A 15 415 414 HOH HOH . T 5 HOH A 16 416 504 HOH HOH . T 5 HOH A 17 417 456 HOH HOH . T 5 HOH A 18 418 485 HOH HOH . T 5 HOH A 19 419 510 HOH HOH . T 5 HOH A 20 420 407 HOH HOH . T 5 HOH A 21 421 477 HOH HOH . T 5 HOH A 22 422 412 HOH HOH . T 5 HOH A 23 423 409 HOH HOH . T 5 HOH A 24 424 502 HOH HOH . T 5 HOH A 25 425 417 HOH HOH . T 5 HOH A 26 426 478 HOH HOH . T 5 HOH A 27 427 421 HOH HOH . T 5 HOH A 28 428 487 HOH HOH . T 5 HOH A 29 429 479 HOH HOH . T 5 HOH A 30 430 416 HOH HOH . T 5 HOH A 31 431 415 HOH HOH . T 5 HOH A 32 432 419 HOH HOH . T 5 HOH A 33 433 503 HOH HOH . T 5 HOH A 34 434 505 HOH HOH . T 5 HOH A 35 435 509 HOH HOH . T 5 HOH A 36 436 507 HOH HOH . T 5 HOH A 37 437 420 HOH HOH . T 5 HOH A 38 438 418 HOH HOH . T 5 HOH A 39 439 413 HOH HOH . T 5 HOH A 40 440 422 HOH HOH . T 5 HOH A 41 441 475 HOH HOH . T 5 HOH A 42 442 496 HOH HOH . T 5 HOH A 43 443 506 HOH HOH . T 5 HOH A 44 444 501 HOH HOH . T 5 HOH A 45 445 484 HOH HOH . T 5 HOH A 46 446 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . S 4 15.118 46.238 29.703 1 18.95 ? C1 RET 318 A 1 HETATM 2 C C2 RET . . . S 4 14.938 47.166 28.479 1 30.04 ? C2 RET 318 A 1 HETATM 3 C C3 RET . . . S 4 14.878 48.64 28.572 1 36.61 ? C3 RET 318 A 1 HETATM 4 C C4 RET . . . S 4 14.883 49.25 29.949 1 19.37 ? C4 RET 318 A 1 HETATM 5 C C5 RET . . . S 4 15.259 48.347 31.074 1 18.84 ? C5 RET 318 A 1 HETATM 6 C C6 RET . . . S 4 15.355 47.023 31 1 19 ? C6 RET 318 A 1 HETATM 7 C C7 RET . . . S 4 15.842 46.29 32.184 1 17.74 ? C7 RET 318 A 1 HETATM 8 C C8 RET . . . S 4 15.967 44.913 32.431 1 18.15 ? C8 RET 318 A 1 HETATM 9 C C9 RET . . . S 4 16.413 44.303 33.631 1 18.73 ? C9 RET 318 A 1 HETATM 10 C C10 RET . . . S 4 16.659 42.942 33.549 1 19.2 ? C10 RET 318 A 1 HETATM 11 C C11 RET . . . S 4 17.168 42.151 34.489 1 19.15 ? C11 RET 318 A 1 HETATM 12 C C12 RET . . . S 4 17.337 40.799 34.244 1 20.37 ? C12 RET 318 A 1 HETATM 13 C C13 RET . . . S 4 17.727 39.818 35.209 1 19.57 ? C13 RET 318 A 1 HETATM 14 C C14 RET . . . S 4 17.747 38.512 34.713 1 21.59 ? C14 RET 318 A 1 HETATM 15 C C15 RET . . . S 4 17.675 37.425 35.475 1 21.97 ? C15 RET 318 A 1 HETATM 16 C C16 RET . . . S 4 16.376 45.476 29.245 1 20 ? C16 RET 318 A 1 HETATM 17 C C17 RET . . . S 4 13.912 45.28 29.849 1 23.28 ? C17 RET 318 A 1 HETATM 18 C C18 RET . . . S 4 15.318 49.129 32.375 1 21.54 ? C18 RET 318 A 1 HETATM 19 C C19 RET . . . S 4 16.826 45.144 34.831 1 20.74 ? C19 RET 318 A 1 HETATM 20 C C20 RET . . . S 4 18.099 40.219 36.609 1 21.24 ? C20 RET 318 A 1 HETATM 21 H H21 RET . . . S 4 15.665 46.974 27.852 1 36.05 ? H21 RET 318 A 1 HETATM 22 H H22 RET . . . S 4 14.111 46.9 28.026 1 36.05 ? H22 RET 318 A 1 HETATM 23 H H31 RET . . . S 4 14.07 48.947 28.112 1 43.93 ? H31 RET 318 A 1 HETATM 24 H H32 RET . . . S 4 15.637 49.012 28.078 1 43.93 ? H32 RET 318 A 1 HETATM 25 H H41 RET . . . S 4 13.991 49.607 30.139 1 23.24 ? H41 RET 318 A 1 HETATM 26 H H42 RET . . . S 4 15.501 50.009 29.956 1 23.24 ? H42 RET 318 A 1 HETATM 27 H H7 RET . . . S 4 15.781 46.853 32.982 1 21.29 ? H7 RET 318 A 1 HETATM 28 H H8 RET . . . S 4 16.103 44.362 31.633 1 21.78 ? H8 RET 318 A 1 HETATM 29 H H10 RET . . . S 4 16.438 42.496 32.706 1 23.05 ? H10 RET 318 A 1 HETATM 30 H H11 RET . . . S 4 17.094 42.437 35.423 1 22.98 ? H11 RET 318 A 1 HETATM 31 H H12 RET . . . S 4 17.179 40.479 33.332 1 24.45 ? H12 RET 318 A 1 HETATM 32 H H14 RET . . . S 4 17.818 38.337 33.753 1 25.91 ? H14 RET 318 A 1 HETATM 33 H H15 RET . . . S 4 17.691 37.534 36.448 1 26.36 ? H15 RET 318 A 1 HETATM 34 H H161 RET . . . S 4 16.239 45.027 28.386 1 24 ? H161 RET 318 A 1 HETATM 35 H H162 RET . . . S 4 17.145 46.072 29.136 1 24 ? H162 RET 318 A 1 HETATM 36 H H163 RET . . . S 4 16.639 44.786 29.888 1 24 ? H163 RET 318 A 1 HETATM 37 H H171 RET . . . S 4 14.09 44.595 30.525 1 27.94 ? H171 RET 318 A 1 HETATM 38 H H172 RET . . . S 4 13.72 44.828 29.002 1 27.94 ? H172 RET 318 A 1 HETATM 39 H H173 RET . . . S 4 13.108 45.77 30.119 1 27.94 ? H173 RET 318 A 1 HETATM 40 H H181 RET . . . S 4 15.424 50.094 32.25 1 25.85 ? H181 RET 318 A 1 HETATM 41 H H182 RET . . . S 4 16.059 48.869 32.959 1 25.85 ? H182 RET 318 A 1 HETATM 42 H H183 RET . . . S 4 14.517 49.035 32.929 1 25.85 ? H183 RET 318 A 1 HETATM 43 H H191 RET . . . S 4 17.302 44.592 35.485 1 24.89 ? H191 RET 318 A 1 HETATM 44 H H192 RET . . . S 4 17.417 45.872 34.548 1 24.89 ? H192 RET 318 A 1 HETATM 45 H H193 RET . . . S 4 16.038 45.531 35.263 1 24.89 ? H193 RET 318 A 1 HETATM 46 H H201 RET . . . S 4 17.309 40.479 37.126 1 25.49 ? H201 RET 318 A 1 HETATM 47 H H202 RET . . . S 4 18.536 39.484 37.085 1 25.49 ? H202 RET 318 A 1 HETATM 48 H H203 RET . . . S 4 18.715 40.98 36.609 1 25.49 ? H203 RET 318 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #