data_9F9H # _model_server_result.job_id cdjbQartf55QCr7SWRB-yw _model_server_result.datetime_utc '2025-01-22 17:10:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 9F9H # _exptl.entry_id 9F9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9H _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id R _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 317 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9H _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 313 OLC OLC . J 3 OLC A 1 309 314 OLC OLC . K 2 LI1 A 1 310 316 LI1 LI1 . L 2 LI1 A 1 311 317 LI1 LI1 . M 2 LI1 A 1 312 318 LI1 LI1 . N 2 LI1 A 1 313 319 LI1 LI1 . O 2 LI1 A 1 314 320 LI1 LI1 . P 2 LI1 A 1 315 321 LI1 LI1 . Q 2 LI1 A 1 316 322 LI1 LI1 . R 4 RET A 1 317 216 RET LYR . S 5 HOH A 1 401 3 HOH HOH . S 5 HOH A 2 402 1 HOH HOH . S 5 HOH A 3 403 400 HOH HOH . S 5 HOH A 4 404 515 HOH HOH . S 5 HOH A 5 405 403 HOH HOH . S 5 HOH A 6 406 507 HOH HOH . S 5 HOH A 7 407 499 HOH HOH . S 5 HOH A 8 408 441 HOH HOH . S 5 HOH A 9 409 510 HOH HOH . S 5 HOH A 10 410 401 HOH HOH . S 5 HOH A 11 411 518 HOH HOH . S 5 HOH A 12 412 508 HOH HOH . S 5 HOH A 13 413 520 HOH HOH . S 5 HOH A 14 414 402 HOH HOH . S 5 HOH A 15 415 516 HOH HOH . S 5 HOH A 16 416 404 HOH HOH . S 5 HOH A 17 417 2 HOH HOH . S 5 HOH A 18 418 479 HOH HOH . S 5 HOH A 19 419 519 HOH HOH . S 5 HOH A 20 420 484 HOH HOH . S 5 HOH A 21 421 411 HOH HOH . S 5 HOH A 22 422 504 HOH HOH . S 5 HOH A 23 423 506 HOH HOH . S 5 HOH A 24 424 522 HOH HOH . S 5 HOH A 25 425 523 HOH HOH . S 5 HOH A 26 426 416 HOH HOH . S 5 HOH A 27 427 517 HOH HOH . S 5 HOH A 28 428 514 HOH HOH . S 5 HOH A 29 429 512 HOH HOH . S 5 HOH A 30 430 415 HOH HOH . S 5 HOH A 31 431 478 HOH HOH . S 5 HOH A 32 432 509 HOH HOH . S 5 HOH A 33 433 423 HOH HOH . S 5 HOH A 34 434 419 HOH HOH . S 5 HOH A 35 435 417 HOH HOH . S 5 HOH A 36 436 521 HOH HOH . S 5 HOH A 37 437 501 HOH HOH . S 5 HOH A 38 438 422 HOH HOH . S 5 HOH A 39 439 513 HOH HOH . S 5 HOH A 40 440 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . I 3 3.583 38.387 36.393 1 64.36 ? C18 OLC 308 A 1 HETATM 2 C C10 OLC . . . I 3 5.031 37.231 43.928 1 65.95 ? C10 OLC 308 A 1 HETATM 3 C C9 OLC . . . I 3 4.562 38.197 44.749 1 71.47 ? C9 OLC 308 A 1 HETATM 4 C C17 OLC . . . I 3 4.283 39.304 37.425 1 71.61 ? C17 OLC 308 A 1 HETATM 5 C C11 OLC . . . I 3 6.308 37.152 43.119 1 64.08 ? C11 OLC 308 A 1 HETATM 6 C C8 OLC . . . I 3 4.56 39.53 45.497 1 59.55 ? C8 OLC 308 A 1 HETATM 7 C C24 OLC . . . I 3 4.702 36.15 56.465 1 81.01 ? C24 OLC 308 A 1 HETATM 8 C C16 OLC . . . I 3 3.609 39.184 38.819 1 84.63 ? C16 OLC 308 A 1 HETATM 9 C C12 OLC . . . I 3 6.254 37.366 41.595 1 49.34 ? C12 OLC 308 A 1 HETATM 10 C C7 OLC . . . I 3 3.227 39.82 46.198 1 61.49 ? C7 OLC 308 A 1 HETATM 11 C C15 OLC . . . I 3 3.562 37.715 39.33 1 89.79 ? C15 OLC 308 A 1 HETATM 12 C C13 OLC . . . I 3 5.212 36.491 40.861 1 65.9 ? C13 OLC 308 A 1 HETATM 13 C C6 OLC . . . I 3 3.416 40.084 47.724 1 59.35 ? C6 OLC 308 A 1 HETATM 14 C C14 OLC . . . I 3 5.002 37.142 39.466 1 67.05 ? C14 OLC 308 A 1 HETATM 15 C C5 OLC . . . I 3 3.929 38.808 48.445 1 69.39 ? C5 OLC 308 A 1 HETATM 16 C C4 OLC . . . I 3 4.822 39.221 49.65 1 77.59 ? C4 OLC 308 A 1 HETATM 17 C C3 OLC . . . I 3 4.4 38.43 50.92 1 90.06 ? C3 OLC 308 A 1 HETATM 18 C C2 OLC . . . I 3 5.604 38.337 51.891 1 89.7 ? C2 OLC 308 A 1 HETATM 19 C C21 OLC . . . I 3 3.718 37.319 54.454 1 112.65 ? C21 OLC 308 A 1 HETATM 20 C C1 OLC . . . I 3 5.123 38.809 53.279 1 83.99 ? C1 OLC 308 A 1 HETATM 21 C C22 OLC . . . I 3 3.747 36.017 55.271 1 104.15 ? C22 OLC 308 A 1 HETATM 22 O O19 OLC . . . I 3 4.834 39.953 53.437 1 72.42 ? O19 OLC 308 A 1 HETATM 23 O O25 OLC . . . I 3 4.836 34.889 57.089 1 81.01 ? O25 OLC 308 A 1 HETATM 24 O O23 OLC . . . I 3 2.452 35.731 55.724 1 109.54 ? O23 OLC 308 A 1 HETATM 25 O O20 OLC . . . I 3 5.017 37.876 54.338 1 107.41 ? O20 OLC 308 A 1 HETATM 26 H H18 OLC . . . I 3 3.859 37.351 36.582 0 77.26 ? H18 OLC 308 A 1 HETATM 27 H H18A OLC . . . I 3 2.505 38.496 36.482 0 77.26 ? H18A OLC 308 A 1 HETATM 28 H H18B OLC . . . I 3 3.894 38.668 35.389 0 77.26 ? H18B OLC 308 A 1 HETATM 29 H H10 OLC . . . I 3 5.472 36.439 44.528 0 79.16 ? H10 OLC 308 A 1 HETATM 30 H H9 OLC . . . I 3 5.216 38.918 44.265 0 85.79 ? H9 OLC 308 A 1 HETATM 31 H H17 OLC . . . I 3 4.219 40.336 37.086 0 85.96 ? H17 OLC 308 A 1 HETATM 32 H H17A OLC . . . I 3 5.329 39.013 37.509 0 85.96 ? H17A OLC 308 A 1 HETATM 33 H H11 OLC . . . I 3 6.986 37.906 43.521 0 76.92 ? H11 OLC 308 A 1 HETATM 34 H H11A OLC . . . I 3 6.728 36.159 43.285 0 76.92 ? H11A OLC 308 A 1 HETATM 35 H H8 OLC . . . I 3 4.758 40.329 44.783 0 71.49 ? H8 OLC 308 A 1 HETATM 36 H H8A OLC . . . I 3 5.35 39.508 46.248 0 71.49 ? H8A OLC 308 A 1 HETATM 37 H H24 OLC . . . I 3 4.298 36.869 57.176 0 97.24 ? H24 OLC 308 A 1 HETATM 38 H H24A OLC . . . I 3 5.676 36.491 56.117 0 97.24 ? H24A OLC 308 A 1 HETATM 39 H H16 OLC . . . I 3 4.172 39.785 39.533 0 101.58 ? H16 OLC 308 A 1 HETATM 40 H H16A OLC . . . I 3 2.59 39.563 38.749 0 101.58 ? H16A OLC 308 A 1 HETATM 41 H H12 OLC . . . I 3 6.013 38.411 41.407 0 59.23 ? H12 OLC 308 A 1 HETATM 42 H H12A OLC . . . I 3 7.237 37.141 41.185 0 59.23 ? H12A OLC 308 A 1 HETATM 43 H H7 OLC . . . I 3 2.774 40.699 45.742 0 73.82 ? H7 OLC 308 A 1 HETATM 44 H H7A OLC . . . I 3 2.567 38.962 46.069 0 73.82 ? H7A OLC 308 A 1 HETATM 45 H H15 OLC . . . I 3 3 37.107 38.623 0 107.77 ? H15 OLC 308 A 1 HETATM 46 H H15A OLC . . . I 3 3.072 37.689 40.302 0 107.77 ? H15A OLC 308 A 1 HETATM 47 H H13 OLC . . . I 3 4.275 36.475 41.415 0 79.11 ? H13 OLC 308 A 1 HETATM 48 H H13A OLC . . . I 3 5.585 35.473 40.75 0 79.11 ? H13A OLC 308 A 1 HETATM 49 H H6 OLC . . . I 3 4.14 40.887 47.861 0 71.24 ? H6 OLC 308 A 1 HETATM 50 H H6A OLC . . . I 3 2.46 40.379 48.157 0 71.24 ? H6A OLC 308 A 1 HETATM 51 H H14 OLC . . . I 3 5.722 37.951 39.338 0 80.49 ? H14 OLC 308 A 1 HETATM 52 H H14A OLC . . . I 3 5.161 36.39 38.693 0 80.49 ? H14A OLC 308 A 1 HETATM 53 H H5 OLC . . . I 3 3.08 38.226 48.803 0 83.29 ? H5 OLC 308 A 1 HETATM 54 H H5A OLC . . . I 3 4.514 38.207 47.748 0 83.29 ? H5A OLC 308 A 1 HETATM 55 H H4 OLC . . . I 3 5.864 39.003 49.419 0 93.14 ? H4 OLC 308 A 1 HETATM 56 H H4A OLC . . . I 3 4.706 40.289 49.835 0 93.14 ? H4A OLC 308 A 1 HETATM 57 H H3 OLC . . . I 3 3.575 38.945 51.411 0 108.1 ? H3 OLC 308 A 1 HETATM 58 H H3A OLC . . . I 3 4.084 37.427 50.635 0 108.1 ? H3A OLC 308 A 1 HETATM 59 H H2 OLC . . . I 3 5.954 37.308 51.95 0 107.67 ? H2 OLC 308 A 1 HETATM 60 H H2A OLC . . . I 3 6.413 38.976 51.541 0 107.67 ? H2A OLC 308 A 1 HETATM 61 H H21 OLC . . . I 3 3.331 37.106 53.458 0 135.2 ? H21 OLC 308 A 1 HETATM 62 H H21A OLC . . . I 3 3.065 38.037 54.952 0 135.2 ? H21A OLC 308 A 1 HETATM 63 H H22 OLC . . . I 3 4.104 35.205 54.637 0 125.01 ? H22 OLC 308 A 1 HETATM 64 H HO25 OLC . . . I 3 4.003 34.439 57.064 0 97.24 ? HO25 OLC 308 A 1 HETATM 65 H HO23 OLC . . . I 3 2.237 36.308 56.445 0 131.48 ? HO23 OLC 308 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #