data_9F9H # _model_server_result.job_id pzciGULmyClCiavRCQ5k_A _model_server_result.datetime_utc '2025-01-22 17:08:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 9F9H # _exptl.entry_id 9F9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9H _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id R _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 317 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9H _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 313 OLC OLC . J 3 OLC A 1 309 314 OLC OLC . K 2 LI1 A 1 310 316 LI1 LI1 . L 2 LI1 A 1 311 317 LI1 LI1 . M 2 LI1 A 1 312 318 LI1 LI1 . N 2 LI1 A 1 313 319 LI1 LI1 . O 2 LI1 A 1 314 320 LI1 LI1 . P 2 LI1 A 1 315 321 LI1 LI1 . Q 2 LI1 A 1 316 322 LI1 LI1 . R 4 RET A 1 317 216 RET LYR . S 5 HOH A 1 401 3 HOH HOH . S 5 HOH A 2 402 1 HOH HOH . S 5 HOH A 3 403 400 HOH HOH . S 5 HOH A 4 404 515 HOH HOH . S 5 HOH A 5 405 403 HOH HOH . S 5 HOH A 6 406 507 HOH HOH . S 5 HOH A 7 407 499 HOH HOH . S 5 HOH A 8 408 441 HOH HOH . S 5 HOH A 9 409 510 HOH HOH . S 5 HOH A 10 410 401 HOH HOH . S 5 HOH A 11 411 518 HOH HOH . S 5 HOH A 12 412 508 HOH HOH . S 5 HOH A 13 413 520 HOH HOH . S 5 HOH A 14 414 402 HOH HOH . S 5 HOH A 15 415 516 HOH HOH . S 5 HOH A 16 416 404 HOH HOH . S 5 HOH A 17 417 2 HOH HOH . S 5 HOH A 18 418 479 HOH HOH . S 5 HOH A 19 419 519 HOH HOH . S 5 HOH A 20 420 484 HOH HOH . S 5 HOH A 21 421 411 HOH HOH . S 5 HOH A 22 422 504 HOH HOH . S 5 HOH A 23 423 506 HOH HOH . S 5 HOH A 24 424 522 HOH HOH . S 5 HOH A 25 425 523 HOH HOH . S 5 HOH A 26 426 416 HOH HOH . S 5 HOH A 27 427 517 HOH HOH . S 5 HOH A 28 428 514 HOH HOH . S 5 HOH A 29 429 512 HOH HOH . S 5 HOH A 30 430 415 HOH HOH . S 5 HOH A 31 431 478 HOH HOH . S 5 HOH A 32 432 509 HOH HOH . S 5 HOH A 33 433 423 HOH HOH . S 5 HOH A 34 434 419 HOH HOH . S 5 HOH A 35 435 417 HOH HOH . S 5 HOH A 36 436 521 HOH HOH . S 5 HOH A 37 437 501 HOH HOH . S 5 HOH A 38 438 422 HOH HOH . S 5 HOH A 39 439 513 HOH HOH . S 5 HOH A 40 440 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 3 21.788 55.166 37.281 1 55.57 ? C18 OLC 309 A 1 HETATM 2 C C10 OLC . . . J 3 21.484 56.965 28.731 1 73.2 ? C10 OLC 309 A 1 HETATM 3 C C9 OLC . . . J 3 22.224 57.502 27.738 1 48.82 ? C9 OLC 309 A 1 HETATM 4 C C17 OLC . . . J 3 22.217 53.834 36.627 1 56.73 ? C17 OLC 309 A 1 HETATM 5 C C11 OLC . . . J 3 21.611 57.129 30.257 1 67.41 ? C11 OLC 309 A 1 HETATM 6 C C8 OLC . . . J 3 23.346 58.336 27.093 1 81.91 ? C8 OLC 309 A 1 HETATM 7 C C24 OLC . . . J 3 28.426 55.857 15.626 1 89.99 ? C24 OLC 309 A 1 HETATM 8 C C16 OLC . . . J 3 21.419 53.523 35.324 1 64.46 ? C16 OLC 309 A 1 HETATM 9 C C12 OLC . . . J 3 21.831 55.738 30.974 1 81.93 ? C12 OLC 309 A 1 HETATM 10 C C7 OLC . . . J 3 24.084 57.546 25.977 1 103.54 ? C7 OLC 309 A 1 HETATM 11 C C15 OLC . . . J 3 21.552 54.662 34.281 1 61.59 ? C15 OLC 309 A 1 HETATM 12 C C13 OLC . . . J 3 20.697 55.455 32.011 1 56.77 ? C13 OLC 309 A 1 HETATM 13 C C6 OLC . . . J 3 23.472 57.87 24.574 1 116.48 ? C6 OLC 309 A 1 HETATM 14 C C14 OLC . . . J 3 21.07 54.206 32.872 1 56.09 ? C14 OLC 309 A 1 HETATM 15 C C5 OLC . . . J 3 24.523 57.632 23.446 1 115.8 ? C5 OLC 309 A 1 HETATM 16 C C4 OLC . . . J 3 23.829 57.086 22.155 1 109.41 ? C4 OLC 309 A 1 HETATM 17 C C3 OLC . . . J 3 24.396 57.775 20.874 1 100.6 ? C3 OLC 309 A 1 HETATM 18 C C2 OLC . . . J 3 24.42 56.752 19.704 1 96.3 ? C2 OLC 309 A 1 HETATM 19 C C21 OLC . . . J 3 26.263 56.492 16.781 1 104.26 ? C21 OLC 309 A 1 HETATM 20 C C1 OLC . . . J 3 24.761 57.437 18.354 1 96.12 ? C1 OLC 309 A 1 HETATM 21 C C22 OLC . . . J 3 27.609 55.757 16.921 1 99.6 ? C22 OLC 309 A 1 HETATM 22 O O19 OLC . . . J 3 23.938 58.003 17.703 1 93.14 ? O19 OLC 309 A 1 HETATM 23 O O25 OLC . . . J 3 29.412 54.85 15.657 1 71.87 ? O25 OLC 309 A 1 HETATM 24 O O23 OLC . . . J 3 28.345 56.305 17.983 1 91.42 ? O23 OLC 309 A 1 HETATM 25 O O20 OLC . . . J 3 26.09 57.355 17.89 1 98.73 ? O20 OLC 309 A 1 HETATM 26 H H18 OLC . . . J 3 22.303 55.286 38.232 0 66.71 ? H18 OLC 309 A 1 HETATM 27 H H18A OLC . . . J 3 22.045 55.993 36.622 0 66.71 ? H18A OLC 309 A 1 HETATM 28 H H18B OLC . . . J 3 20.713 55.158 37.45 0 66.71 ? H18B OLC 309 A 1 HETATM 29 H H10 OLC . . . J 3 20.56 57.527 28.833 0 87.87 ? H10 OLC 309 A 1 HETATM 30 H H9 OLC . . . J 3 22.578 58.272 28.419 0 58.61 ? H9 OLC 309 A 1 HETATM 31 H H17 OLC . . . J 3 22.051 53.026 37.339 0 68.11 ? H17 OLC 309 A 1 HETATM 32 H H17A OLC . . . J 3 23.277 53.89 36.383 0 68.11 ? H17A OLC 309 A 1 HETATM 33 H H11 OLC . . . J 3 20.698 57.586 30.642 0 80.91 ? H11 OLC 309 A 1 HETATM 34 H H11A OLC . . . J 3 22.462 57.778 30.474 0 80.91 ? H11A OLC 309 A 1 HETATM 35 H H8 OLC . . . J 3 24.066 58.615 27.863 0 98.32 ? H8 OLC 309 A 1 HETATM 36 H H8A OLC . . . J 3 22.912 59.237 26.66 0 98.32 ? H8A OLC 309 A 1 HETATM 37 H H24 OLC . . . J 3 28.899 56.836 15.562 0 108.02 ? H24 OLC 309 A 1 HETATM 38 H H24A OLC . . . J 3 27.775 55.711 14.766 0 108.02 ? H24A OLC 309 A 1 HETATM 39 H H16 OLC . . . J 3 20.366 53.397 35.576 0 77.38 ? H16 OLC 309 A 1 HETATM 40 H H16A OLC . . . J 3 21.801 52.6 34.888 0 77.38 ? H16A OLC 309 A 1 HETATM 41 H H12 OLC . . . J 3 21.833 54.948 30.224 0 98.34 ? H12 OLC 309 A 1 HETATM 42 H H12A OLC . . . J 3 22.79 55.751 31.49 0 98.34 ? H12A OLC 309 A 1 HETATM 43 H H7 OLC . . . J 3 25.138 57.822 25.98 0 124.27 ? H7 OLC 309 A 1 HETATM 44 H H7A OLC . . . J 3 23.987 56.478 26.171 0 124.27 ? H7A OLC 309 A 1 HETATM 45 H H15 OLC . . . J 3 22.597 54.963 34.217 0 73.94 ? H15 OLC 309 A 1 HETATM 46 H H15A OLC . . . J 3 20.949 55.51 34.604 0 73.94 ? H15A OLC 309 A 1 HETATM 47 H H13 OLC . . . J 3 19.764 55.265 31.483 0 68.15 ? H13 OLC 309 A 1 HETATM 48 H H13A OLC . . . J 3 20.577 56.32 32.661 0 68.15 ? H13A OLC 309 A 1 HETATM 49 H H6 OLC . . . J 3 22.611 57.225 24.402 0 139.8 ? H6 OLC 309 A 1 HETATM 50 H H6A OLC . . . J 3 23.156 58.912 24.554 0 139.8 ? H6A OLC 309 A 1 HETATM 51 H H14 OLC . . . J 3 20.195 53.566 32.979 0 67.33 ? H14 OLC 309 A 1 HETATM 52 H H14A OLC . . . J 3 21.868 53.651 32.378 0 67.33 ? H14A OLC 309 A 1 HETATM 53 H H5 OLC . . . J 3 25.26 56.907 23.79 0 138.99 ? H5 OLC 309 A 1 HETATM 54 H H5A OLC . . . J 3 25.02 58.574 23.215 0 138.99 ? H5A OLC 309 A 1 HETATM 55 H H4 OLC . . . J 3 24.001 56.012 22.086 0 131.32 ? H4 OLC 309 A 1 HETATM 56 H H4A OLC . . . J 3 22.759 57.279 22.218 0 131.32 ? H4A OLC 309 A 1 HETATM 57 H H3 OLC . . . J 3 23.762 58.62 20.606 0 120.74 ? H3 OLC 309 A 1 HETATM 58 H H3A OLC . . . J 3 25.409 58.128 21.07 0 120.74 ? H3A OLC 309 A 1 HETATM 59 H H2 OLC . . . J 3 25.171 55.991 19.914 0 115.58 ? H2 OLC 309 A 1 HETATM 60 H H2A OLC . . . J 3 23.44 56.283 19.624 0 115.58 ? H2A OLC 309 A 1 HETATM 61 H H21 OLC . . . J 3 26.26 57.075 15.861 0 125.14 ? H21 OLC 309 A 1 HETATM 62 H H21A OLC . . . J 3 25.452 55.765 16.754 0 125.14 ? H21A OLC 309 A 1 HETATM 63 H H22 OLC . . . J 3 27.402 54.706 17.122 0 119.54 ? H22 OLC 309 A 1 HETATM 64 H HO25 OLC . . . J 3 29.062 54.071 16.054 0 86.27 ? HO25 OLC 309 A 1 HETATM 65 H HO23 OLC . . . J 3 27.741 56.647 18.63 0 109.74 ? HO23 OLC 309 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 65 #