data_9F9J # _model_server_result.job_id nszJTU7JrCS35YsTjkqDAw _model_server_result.datetime_utc '2025-01-22 13:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 9F9J # _exptl.entry_id 9F9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9J _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id R _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 317 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9J _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 312 OLC OLC . J 3 OLC A 1 309 313 OLC OLC . K 3 OLC A 1 310 314 OLC OLC . L 2 LI1 A 1 311 316 LI1 LI1 . M 2 LI1 A 1 312 317 LI1 LI1 . N 2 LI1 A 1 313 319 LI1 LI1 . O 2 LI1 A 1 314 320 LI1 LI1 . P 2 LI1 A 1 315 321 LI1 LI1 . Q 2 LI1 A 1 316 322 LI1 LI1 . R 4 RET A 1 317 216 RET LYR . S 5 HOH A 1 401 488 HOH HOH . S 5 HOH A 2 402 481 HOH HOH . S 5 HOH A 3 403 402 HOH HOH . S 5 HOH A 4 404 497 HOH HOH . S 5 HOH A 5 405 479 HOH HOH . S 5 HOH A 6 406 425 HOH HOH . S 5 HOH A 7 407 420 HOH HOH . S 5 HOH A 8 408 403 HOH HOH . S 5 HOH A 9 409 455 HOH HOH . S 5 HOH A 10 410 499 HOH HOH . S 5 HOH A 11 411 477 HOH HOH . S 5 HOH A 12 412 414 HOH HOH . S 5 HOH A 13 413 400 HOH HOH . S 5 HOH A 14 414 496 HOH HOH . S 5 HOH A 15 415 476 HOH HOH . S 5 HOH A 16 416 416 HOH HOH . S 5 HOH A 17 417 421 HOH HOH . S 5 HOH A 18 418 478 HOH HOH . S 5 HOH A 19 419 417 HOH HOH . S 5 HOH A 20 420 415 HOH HOH . S 5 HOH A 21 421 406 HOH HOH . S 5 HOH A 22 422 408 HOH HOH . S 5 HOH A 23 423 418 HOH HOH . S 5 HOH A 24 424 422 HOH HOH . S 5 HOH A 25 425 401 HOH HOH . S 5 HOH A 26 426 498 HOH HOH . S 5 HOH A 27 427 500 HOH HOH . S 5 HOH A 28 428 475 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . G 3 20.367 19.327 32.837 1 100.53 ? C18 OLC 306 A 1 HETATM 2 C C10 OLC . . . G 3 12.893 20.937 35.892 1 77.64 ? C10 OLC 306 A 1 HETATM 3 C C9 OLC . . . G 3 12.298 21.061 37.091 1 71.35 ? C9 OLC 306 A 1 HETATM 4 C C17 OLC . . . G 3 19.573 19.966 33.996 1 88.13 ? C17 OLC 306 A 1 HETATM 5 C C11 OLC . . . G 3 13.304 22.067 34.913 1 70.33 ? C11 OLC 306 A 1 HETATM 6 C C8 OLC . . . G 3 11.648 21.86 38.258 1 77.18 ? C8 OLC 306 A 1 HETATM 7 C C24 OLC . . . G 3 11.268 23.106 49.411 1 74.73 ? C24 OLC 306 A 1 HETATM 8 C C16 OLC . . . G 3 18.678 21.096 33.432 1 92.14 ? C16 OLC 306 A 1 HETATM 9 C C12 OLC . . . G 3 14.776 22.461 35.216 1 89.97 ? C12 OLC 306 A 1 HETATM 10 C C7 OLC . . . G 3 12.092 21.199 39.59 1 79.91 ? C7 OLC 306 A 1 HETATM 11 C C15 OLC . . . G 3 18.187 22.027 34.572 1 71.83 ? C15 OLC 306 A 1 HETATM 12 C C13 OLC . . . G 3 15.733 21.391 34.618 1 85.68 ? C13 OLC 306 A 1 HETATM 13 C C6 OLC . . . G 3 11.647 22.008 40.845 1 74.24 ? C6 OLC 306 A 1 HETATM 14 C C14 OLC . . . G 3 17.07 21.349 35.411 1 77.63 ? C14 OLC 306 A 1 HETATM 15 C C5 OLC . . . G 3 12.106 23.494 40.832 1 41.26 ? C5 OLC 306 A 1 HETATM 16 C C4 OLC . . . G 3 11.597 24.129 42.156 1 62.21 ? C4 OLC 306 A 1 HETATM 17 C C3 OLC . . . G 3 12.755 24.148 43.192 1 53.53 ? C3 OLC 306 A 1 HETATM 18 C C2 OLC . . . G 3 12.206 24.701 44.535 1 57.16 ? C2 OLC 306 A 1 HETATM 19 C C21 OLC . . . G 3 13.245 23.897 48.095 1 68.02 ? C21 OLC 306 A 1 HETATM 20 C C1 OLC . . . G 3 13.009 24.148 45.736 1 56.96 ? C1 OLC 306 A 1 HETATM 21 C C22 OLC . . . G 3 12.368 24.171 49.325 1 59.87 ? C22 OLC 306 A 1 HETATM 22 O O19 OLC . . . G 3 13.777 23.253 45.59 1 66.13 ? O19 OLC 306 A 1 HETATM 23 O O25 OLC . . . G 3 10.448 23.362 50.529 1 65.51 ? O25 OLC 306 A 1 HETATM 24 O O23 OLC . . . G 3 13.145 24.128 50.483 1 67.55 ? O23 OLC 306 A 1 HETATM 25 O O20 OLC . . . G 3 12.812 24.71 47.02 1 61.64 ? O20 OLC 306 A 1 HETATM 26 H H18 OLC . . . G 3 20.97 20.088 32.346 0 120.69 ? H18 OLC 306 A 1 HETATM 27 H H18A OLC . . . G 3 21.017 18.547 33.229 0 120.69 ? H18A OLC 306 A 1 HETATM 28 H H18B OLC . . . G 3 19.674 18.894 32.119 0 120.69 ? H18B OLC 306 A 1 HETATM 29 H H10 OLC . . . G 3 13.957 20.766 36.03 0 93.22 ? H10 OLC 306 A 1 HETATM 30 H H9 OLC . . . G 3 12.59 22.108 37.068 0 85.68 ? H9 OLC 306 A 1 HETATM 31 H H17 OLC . . . G 3 20.266 20.381 34.728 0 105.81 ? H17 OLC 306 A 1 HETATM 32 H H17A OLC . . . G 3 18.951 19.211 34.473 0 105.81 ? H17A OLC 306 A 1 HETATM 33 H H11 OLC . . . G 3 13.221 21.713 33.884 0 84.45 ? H11 OLC 306 A 1 HETATM 34 H H11A OLC . . . G 3 12.654 22.932 35.053 0 84.45 ? H11A OLC 306 A 1 HETATM 35 H H8 OLC . . . G 3 10.562 21.826 38.172 0 92.66 ? H8 OLC 306 A 1 HETATM 36 H H8A OLC . . . G 3 11.982 22.897 38.23 0 92.66 ? H8A OLC 306 A 1 HETATM 37 H H24 OLC . . . G 3 11.724 22.122 49.513 0 89.72 ? H24 OLC 306 A 1 HETATM 38 H H24A OLC . . . G 3 10.665 23.134 48.504 0 89.72 ? H24A OLC 306 A 1 HETATM 39 H H16 OLC . . . G 3 19.25 21.681 32.713 0 110.61 ? H16 OLC 306 A 1 HETATM 40 H H16A OLC . . . G 3 17.814 20.653 32.935 0 110.61 ? H16A OLC 306 A 1 HETATM 41 H H12 OLC . . . G 3 14.992 23.431 34.769 0 108.02 ? H12 OLC 306 A 1 HETATM 42 H H12A OLC . . . G 3 14.923 22.518 36.293 0 108.02 ? H12A OLC 306 A 1 HETATM 43 H H7 OLC . . . G 3 11.656 20.201 39.645 0 95.94 ? H7 OLC 306 A 1 HETATM 44 H H7A OLC . . . G 3 13.179 21.121 39.593 0 95.94 ? H7A OLC 306 A 1 HETATM 45 H H15 OLC . . . G 3 17.795 22.945 34.136 0 86.25 ? H15 OLC 306 A 1 HETATM 46 H H15A OLC . . . G 3 19.027 22.264 35.223 0 86.25 ? H15A OLC 306 A 1 HETATM 47 H H13 OLC . . . G 3 15.941 21.637 33.578 0 102.87 ? H13 OLC 306 A 1 HETATM 48 H H13A OLC . . . G 3 15.254 20.414 34.671 0 102.87 ? H13A OLC 306 A 1 HETATM 49 H H6 OLC . . . G 3 10.559 21.985 40.9 0 89.14 ? H6 OLC 306 A 1 HETATM 50 H H6A OLC . . . G 3 12.065 21.527 41.729 0 89.14 ? H6A OLC 306 A 1 HETATM 51 H H14 OLC . . . G 3 16.95 21.881 36.355 0 93.21 ? H14 OLC 306 A 1 HETATM 52 H H14A OLC . . . G 3 17.343 20.313 35.611 0 93.21 ? H14A OLC 306 A 1 HETATM 53 H H5 OLC . . . G 3 11.675 24.014 39.976 0 49.57 ? H5 OLC 306 A 1 HETATM 54 H H5A OLC . . . G 3 13.194 23.552 40.781 0 49.57 ? H5A OLC 306 A 1 HETATM 55 H H4 OLC . . . G 3 11.261 25.148 41.966 0 74.7 ? H4 OLC 306 A 1 HETATM 56 H H4A OLC . . . G 3 10.768 23.539 42.547 0 74.7 ? H4A OLC 306 A 1 HETATM 57 H H3 OLC . . . G 3 13.134 23.137 43.339 0 64.29 ? H3 OLC 306 A 1 HETATM 58 H H3A OLC . . . G 3 13.559 24.789 42.832 0 64.29 ? H3A OLC 306 A 1 HETATM 59 H H2 OLC . . . G 3 12.278 25.787 44.528 0 68.64 ? H2 OLC 306 A 1 HETATM 60 H H2A OLC . . . G 3 11.162 24.407 44.64 0 68.64 ? H2A OLC 306 A 1 HETATM 61 H H21 OLC . . . G 3 14.284 24.127 48.33 0 81.68 ? H21 OLC 306 A 1 HETATM 62 H H21A OLC . . . G 3 13.16 22.847 47.815 0 81.68 ? H21A OLC 306 A 1 HETATM 63 H H22 OLC . . . G 3 11.919 25.16 49.232 0 71.89 ? H22 OLC 306 A 1 HETATM 64 H HO25 OLC . . . G 3 10.006 22.565 50.784 0 78.66 ? HO25 OLC 306 A 1 HETATM 65 H HO23 OLC . . . G 3 12.577 24.101 51.242 0 81.11 ? HO23 OLC 306 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #