data_9F9J # _model_server_result.job_id KGqZKY-f8MMeNUR7n0Lprg _model_server_result.datetime_utc '2025-01-22 13:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 9F9J # _exptl.entry_id 9F9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9J _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id R _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 317 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9J _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 312 OLC OLC . J 3 OLC A 1 309 313 OLC OLC . K 3 OLC A 1 310 314 OLC OLC . L 2 LI1 A 1 311 316 LI1 LI1 . M 2 LI1 A 1 312 317 LI1 LI1 . N 2 LI1 A 1 313 319 LI1 LI1 . O 2 LI1 A 1 314 320 LI1 LI1 . P 2 LI1 A 1 315 321 LI1 LI1 . Q 2 LI1 A 1 316 322 LI1 LI1 . R 4 RET A 1 317 216 RET LYR . S 5 HOH A 1 401 488 HOH HOH . S 5 HOH A 2 402 481 HOH HOH . S 5 HOH A 3 403 402 HOH HOH . S 5 HOH A 4 404 497 HOH HOH . S 5 HOH A 5 405 479 HOH HOH . S 5 HOH A 6 406 425 HOH HOH . S 5 HOH A 7 407 420 HOH HOH . S 5 HOH A 8 408 403 HOH HOH . S 5 HOH A 9 409 455 HOH HOH . S 5 HOH A 10 410 499 HOH HOH . S 5 HOH A 11 411 477 HOH HOH . S 5 HOH A 12 412 414 HOH HOH . S 5 HOH A 13 413 400 HOH HOH . S 5 HOH A 14 414 496 HOH HOH . S 5 HOH A 15 415 476 HOH HOH . S 5 HOH A 16 416 416 HOH HOH . S 5 HOH A 17 417 421 HOH HOH . S 5 HOH A 18 418 478 HOH HOH . S 5 HOH A 19 419 417 HOH HOH . S 5 HOH A 20 420 415 HOH HOH . S 5 HOH A 21 421 406 HOH HOH . S 5 HOH A 22 422 408 HOH HOH . S 5 HOH A 23 423 418 HOH HOH . S 5 HOH A 24 424 422 HOH HOH . S 5 HOH A 25 425 401 HOH HOH . S 5 HOH A 26 426 498 HOH HOH . S 5 HOH A 27 427 500 HOH HOH . S 5 HOH A 28 428 475 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . H 3 6.238 32.449 41.765 1 76.48 ? C18 OLC 307 A 1 HETATM 2 C C10 OLC . . . H 3 7.97 29.276 32.515 1 70.74 ? C10 OLC 307 A 1 HETATM 3 C C9 OLC . . . H 3 7.945 29.093 31.183 1 71.33 ? C9 OLC 307 A 1 HETATM 4 C C17 OLC . . . H 3 5.807 32.56 40.288 1 76.22 ? C17 OLC 307 A 1 HETATM 5 C C11 OLC . . . H 3 6.751 29.497 33.45 1 63.61 ? C11 OLC 307 A 1 HETATM 6 C C8 OLC . . . H 3 7.226 28.95 29.809 1 77.07 ? C8 OLC 307 A 1 HETATM 7 C C24 OLC . . . H 3 4.616 32.562 19.138 1 98.63 ? C24 OLC 307 A 1 HETATM 8 C C16 OLC . . . H 3 6.332 31.339 39.495 1 62.7 ? C16 OLC 307 A 1 HETATM 9 C C12 OLC . . . H 3 7.244 29.849 34.883 1 57.98 ? C12 OLC 307 A 1 HETATM 10 C C7 OLC . . . H 3 7.016 30.338 29.151 1 74.11 ? C7 OLC 307 A 1 HETATM 11 C C15 OLC . . . H 3 6.034 31.558 37.991 1 80.3 ? C15 OLC 307 A 1 HETATM 12 C C13 OLC . . . H 3 6.109 30.552 35.676 1 68.81 ? C13 OLC 307 A 1 HETATM 13 C C6 OLC . . . H 3 6.096 30.15 27.909 1 89.27 ? C6 OLC 307 A 1 HETATM 14 C C14 OLC . . . H 3 6.288 30.254 37.192 1 76.95 ? C14 OLC 307 A 1 HETATM 15 C C5 OLC . . . H 3 5.436 31.498 27.499 1 89.3 ? C5 OLC 307 A 1 HETATM 16 C C4 OLC . . . H 3 4.301 31.204 26.474 1 81.83 ? C4 OLC 307 A 1 HETATM 17 C C3 OLC . . . H 3 4.473 32.042 25.177 1 79.82 ? C3 OLC 307 A 1 HETATM 18 C C2 OLC . . . H 3 3.726 31.313 24.027 1 80.43 ? C2 OLC 307 A 1 HETATM 19 C C21 OLC . . . H 3 2.776 33.069 20.792 1 81.57 ? C21 OLC 307 A 1 HETATM 20 C C1 OLC . . . H 3 3.131 32.334 23.031 1 73.32 ? C1 OLC 307 A 1 HETATM 21 C C22 OLC . . . H 3 3.099 32.648 19.35 1 84.03 ? C22 OLC 307 A 1 HETATM 22 O O19 OLC . . . H 3 2.276 33.083 23.381 1 79.43 ? O19 OLC 307 A 1 HETATM 23 O O25 OLC . . . H 3 5.179 33.852 19.212 1 96.63 ? O25 OLC 307 A 1 HETATM 24 O O23 OLC . . . H 3 2.528 31.399 19.099 1 107.14 ? O23 OLC 307 A 1 HETATM 25 O O20 OLC . . . H 3 3.602 32.36 21.697 1 79.87 ? O20 OLC 307 A 1 HETATM 26 H H18 OLC . . . H 3 5.905 33.331 42.308 0 91.82 ? H18 OLC 307 A 1 HETATM 27 H H18A OLC . . . H 3 5.792 31.56 42.207 0 91.82 ? H18A OLC 307 A 1 HETATM 28 H H18B OLC . . . H 3 7.322 32.376 41.822 0 91.82 ? H18B OLC 307 A 1 HETATM 29 H H10 OLC . . . H 3 8.097 28.319 33.014 0 84.94 ? H10 OLC 307 A 1 HETATM 30 H H9 OLC . . . H 3 6.941 29.508 31.211 0 85.64 ? H9 OLC 307 A 1 HETATM 31 H H17 OLC . . . H 3 4.72 32.589 40.23 0 91.51 ? H17 OLC 307 A 1 HETATM 32 H H17A OLC . . . H 3 6.218 33.473 39.86 0 91.51 ? H17A OLC 307 A 1 HETATM 33 H H11 OLC . . . H 3 6.142 30.316 33.064 0 76.39 ? H11 OLC 307 A 1 HETATM 34 H H11A OLC . . . H 3 6.152 28.585 33.486 0 76.39 ? H11A OLC 307 A 1 HETATM 35 H H8 OLC . . . H 3 6.256 28.476 29.96 0 92.53 ? H8 OLC 307 A 1 HETATM 36 H H8A OLC . . . H 3 7.834 28.33 29.15 0 92.53 ? H8A OLC 307 A 1 HETATM 37 H H24 OLC . . . H 3 4.821 32.133 18.158 0 118.4 ? H24 OLC 307 A 1 HETATM 38 H H24A OLC . . . H 3 5.055 31.931 19.91 0 118.4 ? H24A OLC 307 A 1 HETATM 39 H H16 OLC . . . H 3 7.407 31.238 39.646 0 75.29 ? H16 OLC 307 A 1 HETATM 40 H H16A OLC . . . H 3 5.83 30.435 39.84 0 75.29 ? H16A OLC 307 A 1 HETATM 41 H H12 OLC . . . H 3 7.532 28.935 35.4 0 69.62 ? H12 OLC 307 A 1 HETATM 42 H H12A OLC . . . H 3 8.103 30.514 34.816 0 69.62 ? H12A OLC 307 A 1 HETATM 43 H H7 OLC . . . H 3 6.544 31.017 29.861 0 88.98 ? H7 OLC 307 A 1 HETATM 44 H H7A OLC . . . H 3 7.977 30.749 28.84 0 88.98 ? H7A OLC 307 A 1 HETATM 45 H H15 OLC . . . H 3 6.683 32.345 37.608 0 96.41 ? H15 OLC 307 A 1 HETATM 46 H H15A OLC . . . H 3 4.994 31.856 37.871 0 96.41 ? H15A OLC 307 A 1 HETATM 47 H H13 OLC . . . H 3 5.143 30.175 35.341 0 82.63 ? H13 OLC 307 A 1 HETATM 48 H H13A OLC . . . H 3 6.158 31.626 35.507 0 82.63 ? H13A OLC 307 A 1 HETATM 49 H H6 OLC . . . H 3 6.692 29.776 27.077 0 107.17 ? H6 OLC 307 A 1 HETATM 50 H H6A OLC . . . H 3 5.315 29.428 28.15 0 107.17 ? H6A OLC 307 A 1 HETATM 51 H H14 OLC . . . H 3 5.574 29.49 37.502 0 92.39 ? H14 OLC 307 A 1 HETATM 52 H H14A OLC . . . H 3 7.302 29.9 37.379 0 92.39 ? H14A OLC 307 A 1 HETATM 53 H H5 OLC . . . H 3 5.019 31.985 28.38 0 107.21 ? H5 OLC 307 A 1 HETATM 54 H H5A OLC . . . H 3 6.183 32.148 27.044 0 107.21 ? H5A OLC 307 A 1 HETATM 55 H H4 OLC . . . H 3 4.322 30.145 26.217 0 98.25 ? H4 OLC 307 A 1 HETATM 56 H H4A OLC . . . H 3 3.341 31.448 26.929 0 98.25 ? H4A OLC 307 A 1 HETATM 57 H H3 OLC . . . H 3 4.049 33.036 25.32 0 95.83 ? H3 OLC 307 A 1 HETATM 58 H H3A OLC . . . H 3 5.531 32.131 24.932 0 95.83 ? H3A OLC 307 A 1 HETATM 59 H H2 OLC . . . H 3 4.426 30.665 23.501 0 96.57 ? H2 OLC 307 A 1 HETATM 60 H H2A OLC . . . H 3 2.921 30.712 24.448 0 96.57 ? H2A OLC 307 A 1 HETATM 61 H H21 OLC . . . H 3 2.952 34.139 20.904 0 97.93 ? H21 OLC 307 A 1 HETATM 62 H H21A OLC . . . H 3 1.731 32.848 21.008 0 97.93 ? H21A OLC 307 A 1 HETATM 63 H H22 OLC . . . H 3 2.691 33.393 18.667 0 100.89 ? H22 OLC 307 A 1 HETATM 64 H HO25 OLC . . . H 3 5.831 33.948 18.533 0 116.01 ? HO25 OLC 307 A 1 HETATM 65 H HO23 OLC . . . H 3 2.292 30.986 19.921 0 128.62 ? HO23 OLC 307 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #