data_9F9J # _model_server_result.job_id Fsoy3r_GWenNWU0WHMH6_Q _model_server_result.datetime_utc '2025-01-22 13:59:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 9F9J # _exptl.entry_id 9F9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9J _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id R _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 317 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9J _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 312 OLC OLC . J 3 OLC A 1 309 313 OLC OLC . K 3 OLC A 1 310 314 OLC OLC . L 2 LI1 A 1 311 316 LI1 LI1 . M 2 LI1 A 1 312 317 LI1 LI1 . N 2 LI1 A 1 313 319 LI1 LI1 . O 2 LI1 A 1 314 320 LI1 LI1 . P 2 LI1 A 1 315 321 LI1 LI1 . Q 2 LI1 A 1 316 322 LI1 LI1 . R 4 RET A 1 317 216 RET LYR . S 5 HOH A 1 401 488 HOH HOH . S 5 HOH A 2 402 481 HOH HOH . S 5 HOH A 3 403 402 HOH HOH . S 5 HOH A 4 404 497 HOH HOH . S 5 HOH A 5 405 479 HOH HOH . S 5 HOH A 6 406 425 HOH HOH . S 5 HOH A 7 407 420 HOH HOH . S 5 HOH A 8 408 403 HOH HOH . S 5 HOH A 9 409 455 HOH HOH . S 5 HOH A 10 410 499 HOH HOH . S 5 HOH A 11 411 477 HOH HOH . S 5 HOH A 12 412 414 HOH HOH . S 5 HOH A 13 413 400 HOH HOH . S 5 HOH A 14 414 496 HOH HOH . S 5 HOH A 15 415 476 HOH HOH . S 5 HOH A 16 416 416 HOH HOH . S 5 HOH A 17 417 421 HOH HOH . S 5 HOH A 18 418 478 HOH HOH . S 5 HOH A 19 419 417 HOH HOH . S 5 HOH A 20 420 415 HOH HOH . S 5 HOH A 21 421 406 HOH HOH . S 5 HOH A 22 422 408 HOH HOH . S 5 HOH A 23 423 418 HOH HOH . S 5 HOH A 24 424 422 HOH HOH . S 5 HOH A 25 425 401 HOH HOH . S 5 HOH A 26 426 498 HOH HOH . S 5 HOH A 27 427 500 HOH HOH . S 5 HOH A 28 428 475 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 3 5.13 39.106 37.015 1 80.29 ? C18 OLC 309 A 1 HETATM 2 C C10 OLC . . . J 3 3.574 38.103 45.322 1 119.54 ? C10 OLC 309 A 1 HETATM 3 C C9 OLC . . . J 3 3.5 39.01 46.311 1 103.95 ? C9 OLC 309 A 1 HETATM 4 C C17 OLC . . . J 3 4.01 39.154 38.078 1 88.8 ? C17 OLC 309 A 1 HETATM 5 C C11 OLC . . . J 3 4.785 37.766 44.417 1 112.81 ? C11 OLC 309 A 1 HETATM 6 C C8 OLC . . . J 3 4.063 40.099 47.265 1 88.41 ? C8 OLC 309 A 1 HETATM 7 C C24 OLC . . . J 3 5.068 35.22 56.196 1 131.89 ? C24 OLC 309 A 1 HETATM 8 C C16 OLC . . . J 3 3.987 37.836 38.896 1 101.6 ? C16 OLC 309 A 1 HETATM 9 C C12 OLC . . . J 3 4.893 38.861 43.322 1 115.95 ? C12 OLC 309 A 1 HETATM 10 C C7 OLC . . . J 3 3 40.343 48.372 1 92.48 ? C7 OLC 309 A 1 HETATM 11 C C15 OLC . . . J 3 5.249 37.686 39.79 1 97.3 ? C15 OLC 309 A 1 HETATM 12 C C13 OLC . . . J 3 5.856 38.397 42.191 1 101.51 ? C13 OLC 309 A 1 HETATM 13 C C6 OLC . . . J 3 3.622 40.407 49.799 1 81.09 ? C6 OLC 309 A 1 HETATM 14 C C14 OLC . . . J 3 5.329 38.868 40.798 1 95.57 ? C14 OLC 309 A 1 HETATM 15 C C5 OLC . . . J 3 4.308 39.073 50.226 1 83.6 ? C5 OLC 309 A 1 HETATM 16 C C4 OLC . . . J 3 5.354 39.401 51.331 1 101.43 ? C4 OLC 309 A 1 HETATM 17 C C3 OLC . . . J 3 5.036 38.642 52.645 1 110.18 ? C3 OLC 309 A 1 HETATM 18 C C2 OLC . . . J 3 6.295 38.658 53.554 1 111.79 ? C2 OLC 309 A 1 HETATM 19 C C21 OLC . . . J 3 4.252 37.545 55.74 1 121.86 ? C21 OLC 309 A 1 HETATM 20 C C1 OLC . . . J 3 5.89 39.059 54.992 1 125.62 ? C1 OLC 309 A 1 HETATM 21 C C22 OLC . . . J 3 4.329 36.114 55.194 1 128 ? C22 OLC 309 A 1 HETATM 22 O O19 OLC . . . J 3 5.854 40.203 55.314 1 113.72 ? O19 OLC 309 A 1 HETATM 23 O O25 OLC . . . J 3 4.441 35.312 57.455 1 150.41 ? O25 OLC 309 A 1 HETATM 24 O O23 OLC . . . J 3 3.038 35.626 54.984 1 130.58 ? O23 OLC 309 A 1 HETATM 25 O O20 OLC . . . J 3 5.566 38.039 55.913 1 124.73 ? O20 OLC 309 A 1 HETATM 26 H H18 OLC . . . J 3 6.099 39.085 37.511 0 96.4 ? H18 OLC 309 A 1 HETATM 27 H H18A OLC . . . J 3 5.015 38.211 36.407 0 96.4 ? H18A OLC 309 A 1 HETATM 28 H H18B OLC . . . J 3 5.066 39.986 36.38 0 96.4 ? H18B OLC 309 A 1 HETATM 29 H H10 OLC . . . J 3 3.111 38.506 44.426 0 143.5 ? H10 OLC 309 A 1 HETATM 30 H H9 OLC . . . J 3 4.413 39.449 45.917 0 124.79 ? H9 OLC 309 A 1 HETATM 31 H H17 OLC . . . J 3 3.05 39.286 37.581 0 106.61 ? H17 OLC 309 A 1 HETATM 32 H H17A OLC . . . J 3 4.189 39.992 38.75 0 106.61 ? H17A OLC 309 A 1 HETATM 33 H H11 OLC . . . J 3 5.698 37.749 45.014 0 135.43 ? H11 OLC 309 A 1 HETATM 34 H H11A OLC . . . J 3 4.637 36.791 43.951 0 135.43 ? H11A OLC 309 A 1 HETATM 35 H H8 OLC . . . J 3 4.243 41.022 46.713 0 106.14 ? H8 OLC 309 A 1 HETATM 36 H H8A OLC . . . J 3 4.996 39.756 47.713 0 106.14 ? H8A OLC 309 A 1 HETATM 37 H H24 OLC . . . J 3 6.103 35.548 56.281 0 158.32 ? H24 OLC 309 A 1 HETATM 38 H H24A OLC . . . J 3 5.042 34.188 55.851 0 158.32 ? H24A OLC 309 A 1 HETATM 39 H H16 OLC . . . J 3 3.102 37.832 39.533 0 121.97 ? H16 OLC 309 A 1 HETATM 40 H H16A OLC . . . J 3 3.942 36.994 38.206 0 121.97 ? H16A OLC 309 A 1 HETATM 41 H H12 OLC . . . J 3 3.906 39.046 42.901 0 139.19 ? H12 OLC 309 A 1 HETATM 42 H H12A OLC . . . J 3 5.276 39.778 43.767 0 139.19 ? H12A OLC 309 A 1 HETATM 43 H H7 OLC . . . J 3 2.495 41.287 48.169 0 111.03 ? H7 OLC 309 A 1 HETATM 44 H H7A OLC . . . J 3 2.275 39.529 48.344 0 111.03 ? H7A OLC 309 A 1 HETATM 45 H H15 OLC . . . J 3 6.138 37.687 39.162 0 116.81 ? H15 OLC 309 A 1 HETATM 46 H H15A OLC . . . J 3 5.193 36.747 40.339 0 116.81 ? H15A OLC 309 A 1 HETATM 47 H H13 OLC . . . J 3 5.922 37.31 42.2 0 121.86 ? H13 OLC 309 A 1 HETATM 48 H H13A OLC . . . J 3 6.843 38.823 42.364 0 121.86 ? H13A OLC 309 A 1 HETATM 49 H H6 OLC . . . J 3 4.367 41.203 49.818 0 97.36 ? H6 OLC 309 A 1 HETATM 50 H H6A OLC . . . J 3 2.83 40.634 50.513 0 97.36 ? H6A OLC 309 A 1 HETATM 51 H H14 OLC . . . J 3 4.335 39.297 40.922 0 114.73 ? H14 OLC 309 A 1 HETATM 52 H H14A OLC . . . J 3 6.005 39.626 40.402 0 114.73 ? H14A OLC 309 A 1 HETATM 53 H H5 OLC . . . J 3 3.562 38.382 50.618 0 100.37 ? H5 OLC 309 A 1 HETATM 54 H H5A OLC . . . J 3 4.806 38.622 49.368 0 100.37 ? H5A OLC 309 A 1 HETATM 55 H H4 OLC . . . J 3 6.344 39.109 50.981 0 121.77 ? H4 OLC 309 A 1 HETATM 56 H H4A OLC . . . J 3 5.34 40.474 51.527 0 121.77 ? H4A OLC 309 A 1 HETATM 57 H H3 OLC . . . J 3 4.208 39.13 53.158 0 132.27 ? H3 OLC 309 A 1 HETATM 58 H H3A OLC . . . J 3 4.765 37.612 52.415 0 132.27 ? H3A OLC 309 A 1 HETATM 59 H H2 OLC . . . J 3 6.746 37.667 53.568 0 134.2 ? H2 OLC 309 A 1 HETATM 60 H H2A OLC . . . J 3 7.014 39.379 53.166 0 134.2 ? H2A OLC 309 A 1 HETATM 61 H H21 OLC . . . J 3 3.713 38.177 55.034 0 146.28 ? H21 OLC 309 A 1 HETATM 62 H H21A OLC . . . J 3 3.732 37.544 56.698 0 146.28 ? H21A OLC 309 A 1 HETATM 63 H H22 OLC . . . J 3 4.871 36.113 54.248 0 153.65 ? H22 OLC 309 A 1 HETATM 64 H HO25 OLC . . . J 3 3.507 35.4 57.334 0 180.55 ? HO25 OLC 309 A 1 HETATM 65 H HO23 OLC . . . J 3 2.464 36.345 54.752 0 156.74 ? HO23 OLC 309 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 753 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 65 #