data_9F9J # _model_server_result.job_id 9uvghEAKsLIQtK1hD105eQ _model_server_result.datetime_utc '2025-01-22 13:46:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":310}' # _entry.id 9F9J # _exptl.entry_id 9F9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9F9J _cell.length_a 62.95 _cell.length_b 62.95 _cell.length_c 111.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 213 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id R _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 317 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 9F9J _atom_sites.fract_transf_matrix[1][1] 0.015886 _atom_sites.fract_transf_matrix[1][2] 0.009172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 301 303 LI1 LI1 . C 2 LI1 A 1 302 305 LI1 LI1 . D 2 LI1 A 1 303 306 LI1 LI1 . E 2 LI1 A 1 304 307 LI1 LI1 . F 2 LI1 A 1 305 308 LI1 LI1 . G 3 OLC A 1 306 309 OLC OLC . H 3 OLC A 1 307 310 OLC OLC . I 3 OLC A 1 308 312 OLC OLC . J 3 OLC A 1 309 313 OLC OLC . K 3 OLC A 1 310 314 OLC OLC . L 2 LI1 A 1 311 316 LI1 LI1 . M 2 LI1 A 1 312 317 LI1 LI1 . N 2 LI1 A 1 313 319 LI1 LI1 . O 2 LI1 A 1 314 320 LI1 LI1 . P 2 LI1 A 1 315 321 LI1 LI1 . Q 2 LI1 A 1 316 322 LI1 LI1 . R 4 RET A 1 317 216 RET LYR . S 5 HOH A 1 401 488 HOH HOH . S 5 HOH A 2 402 481 HOH HOH . S 5 HOH A 3 403 402 HOH HOH . S 5 HOH A 4 404 497 HOH HOH . S 5 HOH A 5 405 479 HOH HOH . S 5 HOH A 6 406 425 HOH HOH . S 5 HOH A 7 407 420 HOH HOH . S 5 HOH A 8 408 403 HOH HOH . S 5 HOH A 9 409 455 HOH HOH . S 5 HOH A 10 410 499 HOH HOH . S 5 HOH A 11 411 477 HOH HOH . S 5 HOH A 12 412 414 HOH HOH . S 5 HOH A 13 413 400 HOH HOH . S 5 HOH A 14 414 496 HOH HOH . S 5 HOH A 15 415 476 HOH HOH . S 5 HOH A 16 416 416 HOH HOH . S 5 HOH A 17 417 421 HOH HOH . S 5 HOH A 18 418 478 HOH HOH . S 5 HOH A 19 419 417 HOH HOH . S 5 HOH A 20 420 415 HOH HOH . S 5 HOH A 21 421 406 HOH HOH . S 5 HOH A 22 422 408 HOH HOH . S 5 HOH A 23 423 418 HOH HOH . S 5 HOH A 24 424 422 HOH HOH . S 5 HOH A 25 425 401 HOH HOH . S 5 HOH A 26 426 498 HOH HOH . S 5 HOH A 27 427 500 HOH HOH . S 5 HOH A 28 428 475 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . K 3 21.822 55.126 37.549 1 65.42 ? C18 OLC 310 A 1 HETATM 2 C C10 OLC . . . K 3 23.191 56.823 29.487 1 64.26 ? C10 OLC 310 A 1 HETATM 3 C C9 OLC . . . K 3 23.396 57.381 28.282 1 96.21 ? C9 OLC 310 A 1 HETATM 4 C C17 OLC . . . K 3 22.368 53.879 36.819 1 68.19 ? C17 OLC 310 A 1 HETATM 5 C C11 OLC . . . K 3 21.831 56.519 30.166 1 82.25 ? C11 OLC 310 A 1 HETATM 6 C C8 OLC . . . K 3 22.925 58.002 26.936 1 109.37 ? C8 OLC 310 A 1 HETATM 7 C C24 OLC . . . K 3 28.435 56.104 15.589 1 91.92 ? C24 OLC 310 A 1 HETATM 8 C C16 OLC . . . K 3 21.5 53.547 35.578 1 77.48 ? C16 OLC 310 A 1 HETATM 9 C C12 OLC . . . K 3 22.119 55.859 31.544 1 86.89 ? C12 OLC 310 A 1 HETATM 10 C C7 OLC . . . K 3 24.077 57.951 25.899 1 114.29 ? C7 OLC 310 A 1 HETATM 11 C C15 OLC . . . K 3 21.557 54.716 34.561 1 82.2 ? C15 OLC 310 A 1 HETATM 12 C C13 OLC . . . K 3 20.793 55.512 32.281 1 82.87 ? C13 OLC 310 A 1 HETATM 13 C C6 OLC . . . K 3 23.466 57.794 24.477 1 129.18 ? C6 OLC 310 A 1 HETATM 14 C C14 OLC . . . K 3 21.002 54.26 33.184 1 80.2 ? C14 OLC 310 A 1 HETATM 15 C C5 OLC . . . K 3 24.597 57.59 23.431 1 132.92 ? C5 OLC 310 A 1 HETATM 16 C C4 OLC . . . K 3 23.997 56.926 22.157 1 104.82 ? C4 OLC 310 A 1 HETATM 17 C C3 OLC . . . K 3 24.527 57.644 20.886 1 103.85 ? C3 OLC 310 A 1 HETATM 18 C C2 OLC . . . K 3 24.564 56.629 19.713 1 108.17 ? C2 OLC 310 A 1 HETATM 19 C C21 OLC . . . K 3 26.277 56.632 16.776 1 101.29 ? C21 OLC 310 A 1 HETATM 20 C C1 OLC . . . K 3 24.69 57.388 18.373 1 100.5 ? C1 OLC 310 A 1 HETATM 21 C C22 OLC . . . K 3 27.728 56.164 16.949 1 96.62 ? C22 OLC 310 A 1 HETATM 22 O O19 OLC . . . K 3 23.729 57.823 17.826 1 93.96 ? O19 OLC 310 A 1 HETATM 23 O O25 OLC . . . K 3 29.443 55.119 15.626 1 90.4 ? O25 OLC 310 A 1 HETATM 24 O O23 OLC . . . K 3 28.398 57.054 17.789 1 111.73 ? O23 OLC 310 A 1 HETATM 25 O O20 OLC . . . K 3 25.976 57.548 17.811 1 97.94 ? O20 OLC 310 A 1 HETATM 26 H H18 OLC . . . K 3 22.393 55.292 38.461 0 78.55 ? H18 OLC 310 A 1 HETATM 27 H H18A OLC . . . K 3 21.914 55.995 36.901 0 78.55 ? H18A OLC 310 A 1 HETATM 28 H H18B OLC . . . K 3 20.775 54.97 37.8 0 78.55 ? H18B OLC 310 A 1 HETATM 29 H H10 OLC . . . K 3 23.319 55.746 29.416 0 77.17 ? H10 OLC 310 A 1 HETATM 30 H H9 OLC . . . K 3 22.368 57.728 28.339 0 115.5 ? H9 OLC 310 A 1 HETATM 31 H H17 OLC . . . K 3 22.355 53.031 37.501 0 81.88 ? H17 OLC 310 A 1 HETATM 32 H H17A OLC . . . K 3 23.391 54.072 36.498 0 81.88 ? H17A OLC 310 A 1 HETATM 33 H H11 OLC . . . K 3 21.251 55.837 29.543 0 98.75 ? H11 OLC 310 A 1 HETATM 34 H H11A OLC . . . K 3 21.273 57.445 30.309 0 98.75 ? H11A OLC 310 A 1 HETATM 35 H H8 OLC . . . K 3 22.632 59.039 27.099 0 131.3 ? H8 OLC 310 A 1 HETATM 36 H H8A OLC . . . K 3 22.073 57.439 26.556 0 131.3 ? H8A OLC 310 A 1 HETATM 37 H H24 OLC . . . K 3 28.881 57.072 15.369 0 110.36 ? H24 OLC 310 A 1 HETATM 38 H H24A OLC . . . K 3 27.711 55.853 14.815 0 110.36 ? H24A OLC 310 A 1 HETATM 39 H H16 OLC . . . K 3 20.467 53.392 35.891 0 93.03 ? H16 OLC 310 A 1 HETATM 40 H H16A OLC . . . K 3 21.876 52.639 35.107 0 93.03 ? H16A OLC 310 A 1 HETATM 41 H H12 OLC . . . K 3 22.69 54.945 31.389 0 104.32 ? H12 OLC 310 A 1 HETATM 42 H H12A OLC . . . K 3 22.697 56.549 32.156 0 104.32 ? H12A OLC 310 A 1 HETATM 43 H H7 OLC . . . K 3 24.657 58.873 25.95 0 137.2 ? H7 OLC 310 A 1 HETATM 44 H H7A OLC . . . K 3 24.727 57.102 26.115 0 137.2 ? H7A OLC 310 A 1 HETATM 45 H H15 OLC . . . K 3 22.591 55.038 34.442 0 98.69 ? H15 OLC 310 A 1 HETATM 46 H H15A OLC . . . K 3 20.959 55.546 34.933 0 98.69 ? H15A OLC 310 A 1 HETATM 47 H H13 OLC . . . K 3 20.016 55.303 31.548 0 99.5 ? H13 OLC 310 A 1 HETATM 48 H H13A OLC . . . K 3 20.492 56.356 32.899 0 99.5 ? H13A OLC 310 A 1 HETATM 49 H H6 OLC . . . K 3 22.801 56.931 24.463 0 155.06 ? H6 OLC 310 A 1 HETATM 50 H H6A OLC . . . K 3 22.901 58.692 24.226 0 155.06 ? H6A OLC 310 A 1 HETATM 51 H H14 OLC . . . K 3 20.049 53.749 33.325 0 96.29 ? H14 OLC 310 A 1 HETATM 52 H H14A OLC . . . K 3 21.711 53.582 32.709 0 96.29 ? H14A OLC 310 A 1 HETATM 53 H H5 OLC . . . K 3 25.37 56.944 23.85 0 159.55 ? H5 OLC 310 A 1 HETATM 54 H H5A OLC . . . K 3 25.033 58.554 23.17 0 159.55 ? H5A OLC 310 A 1 HETATM 55 H H4 OLC . . . K 3 24.287 55.875 22.126 0 125.83 ? H4 OLC 310 A 1 HETATM 56 H H4A OLC . . . K 3 22.91 57.002 22.189 0 125.83 ? H4A OLC 310 A 1 HETATM 57 H H3 OLC . . . K 3 23.867 58.473 20.632 0 124.67 ? H3 OLC 310 A 1 HETATM 58 H H3A OLC . . . K 3 25.532 58.024 21.073 0 124.67 ? H3A OLC 310 A 1 HETATM 59 H H2 OLC . . . K 3 25.418 55.965 19.835 0 129.85 ? H2 OLC 310 A 1 HETATM 60 H H2A OLC . . . K 3 23.646 56.044 19.712 0 129.85 ? H2A OLC 310 A 1 HETATM 61 H H21 OLC . . . K 3 26.16 57.119 15.808 0 121.6 ? H21 OLC 310 A 1 HETATM 62 H H21A OLC . . . K 3 25.604 55.776 16.836 0 121.6 ? H21A OLC 310 A 1 HETATM 63 H H22 OLC . . . K 3 27.733 55.166 17.388 0 116 ? H22 OLC 310 A 1 HETATM 64 H HO25 OLC . . . K 3 29.093 54.319 15.987 0 108.53 ? HO25 OLC 310 A 1 HETATM 65 H HO23 OLC . . . K 3 28.061 56.966 18.672 0 134.13 ? HO23 OLC 310 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 65 #