data_9F9K # _model_server_result.job_id JjnukuvBUXQJqB3D89i-SQ _model_server_result.datetime_utc '2024-11-14 16:52:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9f9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 9F9K # _exptl.entry_id 9F9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.288 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-oxidanyl-6-oxidanylidene-2-(4-phenylphenyl)-1H-pyrimidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.37 _cell.angle_gamma 90 _cell.entry_id 9F9K _cell.length_a 71.264 _cell.length_b 79.066 _cell.length_c 84.836 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9F9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 64 A ASP 307 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A OD2 ASP 64 A ASP 307 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A OE1 GLU 90 A GLU 333 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 A O ARG 91 A ARG 334 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 E MG MG . A MG 601 1_555 G O1 A1IA7 . A A1IA7 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 E MG MG . A MG 601 1_555 G O3 A1IA7 . A A1IA7 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc7 F MG MG . A MG 602 1_555 G O3 A1IA7 . A A1IA7 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc8 F MG MG . A MG 602 1_555 G O A1IA7 . A A1IA7 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C17 H12 N2 O4' _chem_comp.formula_weight 308.288 _chem_comp.id A1IA7 _chem_comp.mon_nstd_flag . _chem_comp.name '5-oxidanyl-6-oxidanylidene-2-(4-phenylphenyl)-1H-pyrimidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 A1IA7 doub 1 n y C1 C2 A1IA7 sing 2 n y C2 C3 A1IA7 doub 3 n y C4 C3 A1IA7 sing 4 n y C5 C4 A1IA7 doub 5 n y C C5 A1IA7 sing 6 n y C3 C6 A1IA7 sing 7 n n C6 C7 A1IA7 doub 8 n y C7 C8 A1IA7 sing 9 n y C8 C9 A1IA7 doub 10 n y C10 C9 A1IA7 sing 11 n y C11 C10 A1IA7 doub 12 n y C6 C11 A1IA7 sing 13 n y C9 C12 A1IA7 sing 14 n n C12 N A1IA7 sing 15 n n N C13 A1IA7 sing 16 n n O C13 A1IA7 doub 17 n n C13 C14 A1IA7 sing 18 n n C14 C15 A1IA7 doub 19 n n N1 C15 A1IA7 sing 20 n n C12 N1 A1IA7 doub 21 n n C15 C16 A1IA7 sing 22 n n C16 O1 A1IA7 doub 23 n n O2 C16 A1IA7 sing 24 n n O3 C14 A1IA7 sing 25 n n C1 H2 A1IA7 sing 26 n n C2 H3 A1IA7 sing 27 n n C7 H6 A1IA7 sing 28 n n C8 H7 A1IA7 sing 29 n n C10 H8 A1IA7 sing 30 n n C11 H9 A1IA7 sing 31 n n O2 H10 A1IA7 sing 32 n n O3 H11 A1IA7 sing 33 n n N H A1IA7 sing 34 n n C4 H4 A1IA7 sing 35 n n C5 H5 A1IA7 sing 36 n n C H1 A1IA7 sing 37 n n # _atom_sites.entry_id 9F9K _atom_sites.fract_transf_matrix[1][1] 0.014032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000336 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 601 1 MG MG . F 3 MG A 1 602 2 MG MG . G 4 A1IA7 A 1 603 1 A1IA7 INH . H 4 A1IA7 A 1 604 2 A1IA7 INH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IA7 . . . G 4 0.724 29.071 15.828 1 53.04 ? C1 A1IA7 603 A 1 HETATM 2 C C2 A1IA7 . . . G 4 0.763 28.209 14.746 1 53.34 ? C2 A1IA7 603 A 1 HETATM 3 C C3 A1IA7 . . . G 4 1.963 27.629 14.339 1 53.8 ? C3 A1IA7 603 A 1 HETATM 4 C C7 A1IA7 . . . G 4 0.847 26.122 12.675 1 55.36 ? C7 A1IA7 603 A 1 HETATM 5 C C8 A1IA7 . . . G 4 0.887 25.263 11.591 1 55.88 ? C8 A1IA7 603 A 1 HETATM 6 C C9 A1IA7 . . . G 4 2.097 24.96 10.971 1 56.26 ? C9 A1IA7 603 A 1 HETATM 7 C C10 A1IA7 . . . G 4 3.262 25.539 11.47 1 55.54 ? C10 A1IA7 603 A 1 HETATM 8 C C11 A1IA7 . . . G 4 3.216 26.397 12.553 1 54.93 ? C11 A1IA7 603 A 1 HETATM 9 C C12 A1IA7 . . . G 4 2.151 24.04 9.816 1 57.18 ? C12 A1IA7 603 A 1 HETATM 10 C C13 A1IA7 . . . G 4 3.614 22.712 8.383 1 58.21 ? C13 A1IA7 603 A 1 HETATM 11 C C14 A1IA7 . . . G 4 2.398 22.328 7.699 1 58.4 ? C14 A1IA7 603 A 1 HETATM 12 C C15 A1IA7 . . . G 4 1.205 22.819 8.125 1 58.13 ? C15 A1IA7 603 A 1 HETATM 13 C C16 A1IA7 . . . G 4 -0.017 22.387 7.375 1 58.21 ? C16 A1IA7 603 A 1 HETATM 14 O O1 A1IA7 . . . G 4 -0.198 21.2 7.062 1 58.16 ? O1 A1IA7 603 A 1 HETATM 15 O O2 A1IA7 . . . G 4 -0.865 23.354 7.078 1 58.04 ? O2 A1IA7 603 A 1 HETATM 16 O O3 A1IA7 . . . G 4 2.507 21.486 6.655 1 58.42 ? O3 A1IA7 603 A 1 HETATM 17 O O A1IA7 . . . G 4 4.752 22.339 8.1 1 58.48 ? O A1IA7 603 A 1 HETATM 18 N N A1IA7 . . . G 4 3.402 23.574 9.437 1 57.58 ? N A1IA7 603 A 1 HETATM 19 N N1 A1IA7 . . . G 4 1.031 23.692 9.195 1 57.46 ? N1 A1IA7 603 A 1 HETATM 20 C C6 A1IA7 . . . G 4 2.01 26.706 13.179 1 54.72 ? C6 A1IA7 603 A 1 HETATM 21 C C4 A1IA7 . . . G 4 3.118 27.943 15.051 1 53.44 ? C4 A1IA7 603 A 1 HETATM 22 C C5 A1IA7 . . . G 4 3.071 28.805 16.132 1 53.28 ? C5 A1IA7 603 A 1 HETATM 23 C C A1IA7 . . . G 4 1.876 29.369 16.519 1 53.03 ? C A1IA7 603 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #