data_9FA9 # _model_server_result.job_id T4ohUiHs4hOUB509CEEYtg _model_server_result.datetime_utc '2025-04-27 03:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fa9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 9FA9 # _exptl.entry_id 9FA9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 313.412 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 240-meric _pdbx_struct_assembly.oligomeric_count 240 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.30902 0.5 -0.80902 0.5 -0.80902 -0.30902 -0.80902 -0.30902 -0.5 218.25 353.14 571.39 3 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 436.5 436.5 -0.000015 4 'point symmetry operation' ? ? -0.30902 0.5 -0.80902 0.5 0.80902 0.30902 0.80902 -0.30902 -0.5 353.14 -134.89 218.25 5 'point symmetry operation' ? ? -0.80902 0.30902 -0.5 -0.30902 0.5 0.80902 0.5 0.80902 -0.30902 436.5 0.000008 -0.000012 6 'point symmetry operation' ? ? 0.5 0.80902 -0.30902 0.80902 -0.30902 0.5 0.30902 -0.5 -0.80902 -0.000012 0.00002 436.5 7 'point symmetry operation' ? ? 0.30902 -0.5 -0.80902 -0.5 -0.80902 0.30902 -0.80902 0.30902 -0.5 436.5 436.5 436.5 8 'point symmetry operation' ? ? -0.30902 -0.5 -0.80902 0.5 -0.80902 0.30902 -0.80902 -0.30902 0.5 571.39 218.25 353.14 9 'point symmetry operation' ? ? -0.5 0.80902 -0.30902 -0.80902 -0.30902 0.5 0.30902 0.5 0.80902 218.25 353.14 -134.89 10 'point symmetry operation' ? ? 0.80902 0.30902 -0.5 0.30902 0.5 0.80902 0.5 -0.80902 0.30902 83.364 -134.89 218.25 11 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 -0.000015 0.000015 0 12 'point symmetry operation' ? ? 0.80902 -0.30902 -0.5 0.30902 -0.5 0.80902 -0.5 -0.80902 -0.30902 218.25 83.364 571.39 13 'point symmetry operation' ? ? -0.80902 -0.30902 -0.5 -0.30902 -0.5 0.80902 -0.5 0.80902 0.30902 571.39 218.25 83.364 14 'point symmetry operation' ? ? -0.5 -0.80902 0.30902 0.80902 -0.30902 0.5 -0.30902 0.5 0.80902 436.5 0.00002 -0.000008 15 'point symmetry operation' ? ? -0.30902 0.5 0.80902 -0.5 -0.80902 0.30902 0.80902 -0.30902 0.5 -0.000008 436.5 0.000005 16 'point symmetry operation' ? ? 0.80902 -0.30902 0.5 -0.30902 0.5 0.80902 -0.5 -0.80902 0.30902 0.000005 0.000008 436.5 17 'point symmetry operation' ? ? 0.80902 0.30902 0.5 -0.30902 -0.5 0.80902 0.5 -0.80902 -0.30902 -134.89 218.25 353.14 18 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 436.5 0.000015 436.5 19 'point symmetry operation' ? ? -0.80902 0.30902 0.5 0.30902 -0.5 0.80902 0.5 0.80902 0.30902 218.25 83.364 -134.89 20 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0.000015 -0.000015 21 'point symmetry operation' ? ? 0.30902 -0.5 0.80902 -0.5 -0.80902 -0.30902 0.80902 -0.30902 -0.5 83.364 571.39 218.25 22 'point symmetry operation' ? ? -0.30902 -0.5 0.80902 -0.5 0.80902 0.30902 -0.80902 -0.30902 -0.5 218.25 83.364 571.39 23 'point symmetry operation' ? ? 0.5 -0.80902 0.30902 -0.80902 -0.30902 0.5 -0.30902 -0.5 -0.80902 218.25 353.14 571.39 24 'point symmetry operation' ? ? -0.80902 -0.30902 0.5 0.30902 0.5 0.80902 -0.5 0.80902 -0.30902 353.14 -134.89 218.25 25 'point symmetry operation' ? ? 0.30902 0.5 0.80902 0.5 -0.80902 0.30902 0.80902 0.30902 -0.5 -134.89 218.25 83.364 26 'point symmetry operation' ? ? 0.5 0.80902 0.30902 0.80902 -0.30902 -0.5 -0.30902 0.5 -0.80902 -134.89 218.25 353.14 27 'point symmetry operation' ? ? 0.5 -0.80902 -0.30902 -0.80902 -0.30902 -0.5 0.30902 0.5 -0.80902 353.14 571.39 218.25 28 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 436.5 0 436.5 29 'point symmetry operation' ? ? -0.5 -0.80902 -0.30902 -0.80902 0.30902 0.5 -0.30902 0.5 -0.80902 571.39 218.25 353.14 30 'point symmetry operation' ? ? -0.5 0.80902 0.30902 0.80902 0.30902 0.5 0.30902 0.5 -0.80902 83.364 -134.89 218.25 31 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 436.5 436.5 32 'point symmetry operation' ? ? 0.30902 0.5 -0.80902 -0.5 0.80902 0.30902 0.80902 0.30902 0.5 218.25 83.364 -134.89 33 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 436.5 0.000015 436.5 34 'point symmetry operation' ? ? -0.30902 0.5 -0.80902 -0.5 -0.80902 -0.30902 -0.80902 0.30902 0.5 353.14 571.39 218.25 35 'point symmetry operation' ? ? -0.80902 0.30902 -0.5 0.30902 -0.5 -0.80902 -0.5 -0.80902 0.30902 436.5 436.5 436.5 36 'point symmetry operation' ? ? 0.5 0.80902 -0.30902 -0.80902 0.30902 -0.5 -0.30902 0.5 0.80902 -0.000012 436.5 -0.000008 37 'point symmetry operation' ? ? 0.30902 -0.5 -0.80902 0.5 0.80902 -0.30902 0.80902 -0.30902 0.5 436.5 0.000003 0.000005 38 'point symmetry operation' ? ? -0.30902 -0.5 -0.80902 -0.5 0.80902 -0.30902 0.80902 0.30902 -0.5 571.39 218.25 83.364 39 'point symmetry operation' ? ? -0.5 0.80902 -0.30902 0.80902 0.30902 -0.5 -0.30902 -0.5 -0.80902 218.25 83.364 571.39 40 'point symmetry operation' ? ? 0.80902 0.30902 -0.5 -0.30902 -0.5 -0.80902 -0.5 0.80902 -0.30902 83.364 571.39 218.25 41 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 -0.000015 436.5 436.5 42 'point symmetry operation' ? ? 0.80902 -0.30902 -0.5 -0.30902 0.5 -0.80902 0.5 0.80902 0.30902 218.25 353.14 -134.89 43 'point symmetry operation' ? ? -0.80902 -0.30902 -0.5 0.30902 0.5 -0.80902 0.5 -0.80902 -0.30902 571.39 218.25 353.14 44 'point symmetry operation' ? ? -0.5 -0.80902 0.30902 -0.80902 0.30902 -0.5 0.30902 -0.5 -0.80902 436.5 436.5 436.5 45 'point symmetry operation' ? ? -0.30902 0.5 0.80902 0.5 0.80902 -0.30902 -0.80902 0.30902 -0.5 -0.000008 0.000003 436.5 46 'point symmetry operation' ? ? 0.80902 -0.30902 0.5 0.30902 -0.5 -0.80902 0.5 0.80902 -0.30902 0.000005 436.5 -0.000012 47 'point symmetry operation' ? ? 0.80902 0.30902 0.5 0.30902 0.5 -0.80902 -0.5 0.80902 0.30902 -134.89 218.25 83.364 48 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 436.5 436.5 0 49 'point symmetry operation' ? ? -0.80902 0.30902 0.5 -0.30902 0.5 -0.80902 -0.5 -0.80902 -0.30902 218.25 353.14 571.39 50 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 436.5 436.5 51 'point symmetry operation' ? ? 0.30902 -0.5 0.80902 0.5 0.80902 0.30902 -0.80902 0.30902 0.5 83.364 -134.89 218.25 52 'point symmetry operation' ? ? -0.30902 -0.5 0.80902 0.5 -0.80902 -0.30902 0.80902 0.30902 0.5 218.25 353.14 -134.89 53 'point symmetry operation' ? ? 0.5 -0.80902 0.30902 0.80902 0.30902 -0.5 0.30902 0.5 0.80902 218.25 83.364 -134.89 54 'point symmetry operation' ? ? -0.80902 -0.30902 0.5 -0.30902 -0.5 -0.80902 0.5 -0.80902 0.30902 353.14 571.39 218.25 55 'point symmetry operation' ? ? 0.30902 0.5 0.80902 -0.5 0.80902 -0.30902 -0.80902 -0.30902 0.5 -134.89 218.25 353.14 56 'point symmetry operation' ? ? 0.5 0.80902 0.30902 -0.80902 0.30902 0.5 0.30902 -0.5 0.80902 -134.89 218.25 83.364 57 'point symmetry operation' ? ? 0.5 -0.80902 -0.30902 0.80902 0.30902 0.5 -0.30902 -0.5 0.80902 353.14 -134.89 218.25 58 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 436.5 436.5 0 59 'point symmetry operation' ? ? -0.5 -0.80902 -0.30902 0.80902 -0.30902 -0.5 0.30902 -0.5 0.80902 571.39 218.25 83.364 60 'point symmetry operation' ? ? -0.5 0.80902 0.30902 -0.80902 -0.30902 -0.5 -0.30902 -0.5 0.80902 83.364 571.39 218.25 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 F N3' _chem_comp.formula_weight 313.412 _chem_comp.id A1IBS _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 A1IBS doub 1 n y C12 C11 A1IBS sing 2 n y C13 C14 A1IBS sing 3 n y C11 C10 A1IBS doub 4 n y C14 C15 A1IBS doub 5 n y C10 C15 A1IBS sing 6 n y C10 C9 A1IBS sing 7 n n C15 F1 A1IBS sing 8 n n C9 N3 A1IBS sing 9 n n N3 C8 A1IBS sing 10 n n C8 C16 A1IBS doub 11 n y C8 C7 A1IBS sing 12 n y C16 C17 A1IBS sing 13 n y C7 C6 A1IBS doub 14 n y C17 C5 A1IBS doub 15 n y C6 C5 A1IBS sing 16 n y C5 C4 A1IBS sing 17 n n C4 N2 A1IBS sing 18 n n C18 N2 A1IBS sing 19 n n C18 C19 A1IBS sing 20 n n N2 C3 A1IBS sing 21 n n C3 C2 A1IBS sing 22 n n C19 N1 A1IBS sing 23 n n N1 C2 A1IBS sing 24 n n N1 C1 A1IBS sing 25 n n C1 H2 A1IBS sing 26 n n C1 H1 A1IBS sing 27 n n C1 H3 A1IBS sing 28 n n C2 H4 A1IBS sing 29 n n C2 H5 A1IBS sing 30 n n C3 H6 A1IBS sing 31 n n C3 H7 A1IBS sing 32 n n C4 H8 A1IBS sing 33 n n C4 H9 A1IBS sing 34 n n C6 H10 A1IBS sing 35 n n C7 H11 A1IBS sing 36 n n N3 H12 A1IBS sing 37 n n C9 H13 A1IBS sing 38 n n C9 H14 A1IBS sing 39 n n C11 H15 A1IBS sing 40 n n C12 H16 A1IBS sing 41 n n C13 H17 A1IBS sing 42 n n C14 H18 A1IBS sing 43 n n C16 H19 A1IBS sing 44 n n C17 H20 A1IBS sing 45 n n C18 H22 A1IBS sing 46 n n C18 H21 A1IBS sing 47 n n C19 H23 A1IBS sing 48 n n C19 H24 A1IBS sing 49 n n # _atom_sites.entry_id 9FA9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id A1IBS _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id A1IBS _pdbx_nonpoly_scheme.auth_mon_id UNL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IBS . . . E 5 331.143 282.284 254.509 1 0 ? C1 A1IBS 301 A 1 HETATM 2 N N1 A1IBS . . . E 5 330.319 282.152 253.299 1 0 ? N1 A1IBS 301 A 1 HETATM 3 C C2 A1IBS . . . E 5 329.613 280.87 253.407 1 0 ? C2 A1IBS 301 A 1 HETATM 4 C C3 A1IBS . . . E 5 328.827 280.606 252.122 1 0 ? C3 A1IBS 301 A 1 HETATM 5 N N2 A1IBS . . . E 5 329.755 280.488 250.991 1 0 ? N2 A1IBS 301 A 1 HETATM 6 C C4 A1IBS . . . E 5 328.932 280.356 249.782 1 0 ? C4 A1IBS 301 A 1 HETATM 7 C C5 A1IBS . . . E 5 329.811 279.985 248.614 1 0 ? C5 A1IBS 301 A 1 HETATM 8 C C6 A1IBS . . . E 5 330.043 278.654 248.322 1 0 ? C6 A1IBS 301 A 1 HETATM 9 C C7 A1IBS . . . E 5 330.846 278.31 247.253 1 0 ? C7 A1IBS 301 A 1 HETATM 10 C C8 A1IBS . . . E 5 331.423 279.304 246.472 1 0 ? C8 A1IBS 301 A 1 HETATM 11 N N3 A1IBS . . . E 5 332.236 278.961 245.389 1 0 ? N3 A1IBS 301 A 1 HETATM 12 C C9 A1IBS . . . E 5 332.843 280.01 244.566 1 0 ? C9 A1IBS 301 A 1 HETATM 13 C C10 A1IBS . . . E 5 333.667 279.378 243.474 1 0 ? C10 A1IBS 301 A 1 HETATM 14 C C11 A1IBS . . . E 5 333.196 279.36 242.175 1 0 ? C11 A1IBS 301 A 1 HETATM 15 C C12 A1IBS . . . E 5 333.951 278.78 241.173 1 0 ? C12 A1IBS 301 A 1 HETATM 16 C C13 A1IBS . . . E 5 335.178 278.218 241.468 1 0 ? C13 A1IBS 301 A 1 HETATM 17 C C14 A1IBS . . . E 5 335.651 278.235 242.768 1 0 ? C14 A1IBS 301 A 1 HETATM 18 C C15 A1IBS . . . E 5 334.899 278.82 243.771 1 0 ? C15 A1IBS 301 A 1 HETATM 19 F F1 A1IBS . . . E 5 335.361 278.837 245.04 1 0 ? F1 A1IBS 301 A 1 HETATM 20 C C16 A1IBS . . . E 5 331.187 280.641 246.768 1 0 ? C16 A1IBS 301 A 1 HETATM 21 C C17 A1IBS . . . E 5 330.378 280.977 247.835 1 0 ? C17 A1IBS 301 A 1 HETATM 22 C C18 A1IBS . . . E 5 330.462 281.77 250.883 1 0 ? C18 A1IBS 301 A 1 HETATM 23 C C19 A1IBS . . . E 5 331.248 282.033 252.168 1 0 ? C19 A1IBS 301 A 1 HETATM 24 H H2 A1IBS . . . E 5 331.69 283.225 254.475 1 0 ? H2 A1IBS 301 A 1 HETATM 25 H H1 A1IBS . . . E 5 331.848 281.455 254.56 1 0 ? H1 A1IBS 301 A 1 HETATM 26 H H3 A1IBS . . . E 5 330.5 282.268 255.389 1 0 ? H3 A1IBS 301 A 1 HETATM 27 H H4 A1IBS . . . E 5 330.336 280.069 253.561 1 0 ? H4 A1IBS 301 A 1 HETATM 28 H H5 A1IBS . . . E 5 328.925 280.905 254.252 1 0 ? H5 A1IBS 301 A 1 HETATM 29 H H6 A1IBS . . . E 5 328.261 279.68 252.226 1 0 ? H6 A1IBS 301 A 1 HETATM 30 H H7 A1IBS . . . E 5 328.139 281.432 251.942 1 0 ? H7 A1IBS 301 A 1 HETATM 31 H H8 A1IBS . . . E 5 328.183 279.579 249.935 1 0 ? H8 A1IBS 301 A 1 HETATM 32 H H9 A1IBS . . . E 5 328.435 281.304 249.576 1 0 ? H9 A1IBS 301 A 1 HETATM 33 H H10 A1IBS . . . E 5 329.595 277.882 248.93 1 0 ? H10 A1IBS 301 A 1 HETATM 34 H H11 A1IBS . . . E 5 331.029 277.27 247.025 1 0 ? H11 A1IBS 301 A 1 HETATM 35 H H12 A1IBS . . . E 5 332.4 278.027 245.182 1 0 ? H12 A1IBS 301 A 1 HETATM 36 H H13 A1IBS . . . E 5 332.058 280.622 244.121 1 0 ? H13 A1IBS 301 A 1 HETATM 37 H H14 A1IBS . . . E 5 333.482 280.635 245.189 1 0 ? H14 A1IBS 301 A 1 HETATM 38 H H15 A1IBS . . . E 5 332.237 279.8 241.942 1 0 ? H15 A1IBS 301 A 1 HETATM 39 H H16 A1IBS . . . E 5 333.582 278.768 240.157 1 0 ? H16 A1IBS 301 A 1 HETATM 40 H H17 A1IBS . . . E 5 335.768 277.764 240.685 1 0 ? H17 A1IBS 301 A 1 HETATM 41 H H18 A1IBS . . . E 5 336.611 277.794 242.999 1 0 ? H18 A1IBS 301 A 1 HETATM 42 H H19 A1IBS . . . E 5 331.633 281.415 246.163 1 0 ? H19 A1IBS 301 A 1 HETATM 43 H H20 A1IBS . . . E 5 330.193 282.016 248.067 1 0 ? H20 A1IBS 301 A 1 HETATM 44 H H22 A1IBS . . . E 5 329.739 282.571 250.73 1 0 ? H22 A1IBS 301 A 1 HETATM 45 H H21 A1IBS . . . E 5 331.149 281.736 250.039 1 0 ? H21 A1IBS 301 A 1 HETATM 46 H H23 A1IBS . . . E 5 331.813 282.96 252.064 1 0 ? H23 A1IBS 301 A 1 HETATM 47 H H24 A1IBS . . . E 5 331.936 281.207 252.349 1 0 ? H24 A1IBS 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 47 #