data_9FAA # _model_server_result.job_id 9y0v4Bw79HwyGM0un1OnPQ _model_server_result.datetime_utc '2024-10-13 16:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9faa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 9FAA # _exptl.entry_id 9FAA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FAA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 87 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 B SG CYS 22 D CYS 22 1_555 B SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 87 C CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 D SG CYS 22 B CYS 22 1_555 D SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 E SG CYS 22 E CYS 22 1_555 E SG CYS 87 E CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A ND2 ASN 19 A ASN 19 1_555 F C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale2 B ND2 ASN 19 D ASN 19 1_555 G C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 C ND2 ASN 19 C ASN 19 1_555 H C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale4 D ND2 ASN 19 B ASN 19 1_555 I C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale5 E ND2 ASN 19 E ASN 19 1_555 J C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 195 n n C1 O1 NAG sing 196 n n C1 O5 NAG sing 197 n n C1 H1 NAG sing 198 n n C2 C3 NAG sing 199 n n C2 N2 NAG sing 200 n n C2 H2 NAG sing 201 n n C3 C4 NAG sing 202 n n C3 O3 NAG sing 203 n n C3 H3 NAG sing 204 n n C4 C5 NAG sing 205 n n C4 O4 NAG sing 206 n n C4 H4 NAG sing 207 n n C5 C6 NAG sing 208 n n C5 O5 NAG sing 209 n n C5 H5 NAG sing 210 n n C6 O6 NAG sing 211 n n C6 H61 NAG sing 212 n n C6 H62 NAG sing 213 n n C7 C8 NAG sing 214 n n C7 N2 NAG sing 215 n n C7 O7 NAG doub 216 n n C8 H81 NAG sing 217 n n C8 H82 NAG sing 218 n n C8 H83 NAG sing 219 n n N2 HN2 NAG sing 220 n n O1 HO1 NAG sing 221 n n O3 HO3 NAG sing 222 n n O4 HO4 NAG sing 223 n n O6 HO6 NAG sing 224 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9FAA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 201 120 NAG NAG . G 2 NAG D 1 201 120 NAG NAG . H 2 NAG C 1 201 120 NAG NAG . I 2 NAG B 1 201 120 NAG NAG . J 2 NAG E 1 201 120 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 2 146.008 162.418 144.283 1 83.34 ? C1 NAG 201 E 1 HETATM 2 C C2 NAG . . . J 2 145.159 163.355 143.439 1 83.34 ? C2 NAG 201 E 1 HETATM 3 C C3 NAG . . . J 2 143.753 162.772 143.447 1 83.34 ? C3 NAG 201 E 1 HETATM 4 C C4 NAG . . . J 2 143.767 161.302 143.037 1 83.34 ? C4 NAG 201 E 1 HETATM 5 C C5 NAG . . . J 2 144.869 160.524 143.757 1 83.34 ? C5 NAG 201 E 1 HETATM 6 C C6 NAG . . . J 2 145.059 159.116 143.265 1 83.34 ? C6 NAG 201 E 1 HETATM 7 C C7 NAG . . . J 2 146.093 165.663 143.63 1 83.34 ? C7 NAG 201 E 1 HETATM 8 C C8 NAG . . . J 2 145.867 167.007 144.282 1 83.34 ? C8 NAG 201 E 1 HETATM 9 N N2 NAG . . . J 2 145.179 164.713 143.932 1 83.34 ? N2 NAG 201 E 1 HETATM 10 O O3 NAG . . . J 2 142.963 163.553 142.591 1 83.34 ? O3 NAG 201 E 1 HETATM 11 O O4 NAG . . . J 2 142.512 160.774 143.385 1 83.34 ? O4 NAG 201 E 1 HETATM 12 O O5 NAG . . . J 2 146.1 161.191 143.625 1 83.34 ? O5 NAG 201 E 1 HETATM 13 O O6 NAG . . . J 2 146.335 158.686 143.659 1 83.34 ? O6 NAG 201 E 1 HETATM 14 O O7 NAG . . . J 2 147.047 165.488 142.889 1 83.34 ? O7 NAG 201 E 1 HETATM 15 H H1 NAG . . . J 2 145.572 162.288 145.136 1 83.34 ? H1 NAG 201 E 1 HETATM 16 H H2 NAG . . . J 2 145.511 163.342 142.539 1 83.34 ? H2 NAG 201 E 1 HETATM 17 H H3 NAG . . . J 2 143.424 162.809 144.357 1 83.34 ? H3 NAG 201 E 1 HETATM 18 H H4 NAG . . . J 2 143.918 161.255 142.082 1 83.34 ? H4 NAG 201 E 1 HETATM 19 H H5 NAG . . . J 2 144.621 160.449 144.688 1 83.34 ? H5 NAG 201 E 1 HETATM 20 H H61 NAG . . . J 2 144.351 158.569 143.633 1 83.34 ? H61 NAG 201 E 1 HETATM 21 H H62 NAG . . . J 2 144.952 159.121 142.303 1 83.34 ? H62 NAG 201 E 1 HETATM 22 H H81 NAG . . . J 2 145.011 167.363 143.997 1 83.34 ? H81 NAG 201 E 1 HETATM 23 H H82 NAG . . . J 2 145.826 166.898 145.243 1 83.34 ? H82 NAG 201 E 1 HETATM 24 H H83 NAG . . . J 2 146.55 167.664 144.079 1 83.34 ? H83 NAG 201 E 1 HETATM 25 H HN2 NAG . . . J 2 144.54 164.934 144.461 1 83.34 ? HN2 NAG 201 E 1 HETATM 26 H HO3 NAG . . . J 2 143.082 164.369 142.797 1 83.34 ? HO3 NAG 201 E 1 HETATM 27 H HO4 NAG . . . J 2 142.608 160.287 144.076 1 83.34 ? HO4 NAG 201 E 1 HETATM 28 H HO6 NAG . . . J 2 146.755 159.369 143.94 1 83.34 ? HO6 NAG 201 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #