data_9FBF
#
_model_server_result.job_id            lAwkpm-JBH6nMxdgRNGAGA 
_model_server_result.datetime_utc      '2024-11-02 02:23:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":4000}' 
#
_entry.id    9FBF 
#
_exptl.entry_id    9FBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              528.806 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-5-methyl-1-[(1~{R},2~{R})-2-(3-methyl-3-oxidanyl-butyl)cyclopropyl]-5-oxidanyl-hexyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9FBF 
_cell.length_a            65.54 
_cell.length_b            65.54 
_cell.length_c            262.95 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 32.77 -56.759305 -43.825 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H56 O4' 
_chem_comp.formula_weight    528.806 
_chem_comp.id                A1IBM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-5-methyl-1-[(1~{R},2~{R})-2-(3-methyl-3-oxidanyl-butyl)cyclopropyl]-5-oxidanyl-hexyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 A1IBM sing 1 n n 
C1 C6 A1IBM sing 2 n n 
C2 C3 A1IBM sing 3 n n 
C3 C4 A1IBM sing 4 n n 
C3 C11 A1IBM doub 5 e n 
C4 C5 A1IBM sing 6 n n 
C4 C7 A1IBM sing 7 n n 
C5 C6 A1IBM sing 8 n n 
C5 C9 A1IBM sing 9 n n 
C5 C10 A1IBM sing 10 n n 
C7 C8 A1IBM sing 11 n n 
C8 C9 A1IBM sing 12 n n 
C9 C12 A1IBM sing 13 n n 
C11 C28 A1IBM sing 14 n n 
C12 C13 A1IBM sing 15 n n 
C12 C14 A1IBM sing 16 n n 
C13 C21 A1IBM sing 17 n n 
C13 C38 A1IBM sing 18 n n 
C14 C15 A1IBM sing 19 n n 
C15 C16 A1IBM sing 20 n n 
C16 C17 A1IBM sing 21 n n 
C17 C18 A1IBM sing 22 n n 
C17 C19 A1IBM sing 23 n n 
C17 O20 A1IBM sing 24 n n 
C21 C22 A1IBM sing 25 n n 
C21 C38 A1IBM sing 26 n n 
C22 C23 A1IBM sing 27 n n 
C23 C24 A1IBM sing 28 n n 
C24 C25 A1IBM sing 29 n n 
C24 C26 A1IBM sing 30 n n 
C24 O27 A1IBM sing 31 n n 
C28 C29 A1IBM doub 32 z n 
C29 C30 A1IBM sing 33 n n 
C29 C34 A1IBM sing 34 n n 
C30 C31 A1IBM sing 35 n n 
C31 C32 A1IBM sing 36 n n 
C31 O37 A1IBM sing 37 n n 
C32 C33 A1IBM sing 38 n n 
C33 C34 A1IBM sing 39 n n 
C33 O36 A1IBM sing 40 n n 
C34 C35 A1IBM doub 41 n n 
C4 H4 A1IBM sing 42 n n 
C6 H6B A1IBM sing 43 n n 
C6 H6A A1IBM sing 44 n n 
C7 H7A A1IBM sing 45 n n 
C7 H7B A1IBM sing 46 n n 
C8 H8A A1IBM sing 47 n n 
C8 H8B A1IBM sing 48 n n 
C10 H10C A1IBM sing 49 n n 
C10 H10A A1IBM sing 50 n n 
C10 H10B A1IBM sing 51 n n 
C13 H13 A1IBM sing 52 n n 
C15 H15B A1IBM sing 53 n n 
C15 H15A A1IBM sing 54 n n 
C21 H21 A1IBM sing 55 n n 
C22 H22A A1IBM sing 56 n n 
C22 H22B A1IBM sing 57 n n 
C26 H26B A1IBM sing 58 n n 
C26 H26A A1IBM sing 59 n n 
C26 H26C A1IBM sing 60 n n 
C28 H28 A1IBM sing 61 n n 
C1 H1B A1IBM sing 62 n n 
C1 H1A A1IBM sing 63 n n 
C11 H11 A1IBM sing 64 n n 
C12 H12 A1IBM sing 65 n n 
C14 H14A A1IBM sing 66 n n 
C14 H14B A1IBM sing 67 n n 
C16 H16A A1IBM sing 68 n n 
C16 H16B A1IBM sing 69 n n 
C18 H18C A1IBM sing 70 n n 
C18 H18A A1IBM sing 71 n n 
C18 H18B A1IBM sing 72 n n 
C19 H19C A1IBM sing 73 n n 
C19 H19A A1IBM sing 74 n n 
C19 H19B A1IBM sing 75 n n 
C2 H2A A1IBM sing 76 n n 
C2 H2B A1IBM sing 77 n n 
C23 H23A A1IBM sing 78 n n 
C23 H23B A1IBM sing 79 n n 
C25 H25B A1IBM sing 80 n n 
C25 H25C A1IBM sing 81 n n 
C25 H25A A1IBM sing 82 n n 
C30 H30A A1IBM sing 83 n n 
C30 H30B A1IBM sing 84 n n 
C31 H31 A1IBM sing 85 n n 
C32 H32B A1IBM sing 86 n n 
C32 H32A A1IBM sing 87 n n 
C33 H33 A1IBM sing 88 n n 
C35 H35A A1IBM sing 89 n n 
C35 H35B A1IBM sing 90 n n 
C38 H38A A1IBM sing 91 n n 
C38 H38B A1IBM sing 92 n n 
C9 H9 A1IBM sing 93 n n 
O20 H20 A1IBM sing 94 n n 
O27 H27 A1IBM sing 95 n n 
O36 H36 A1IBM sing 96 n n 
O37 H37 A1IBM sing 97 n n 
#
_atom_sites.entry_id                     9FBF 
_atom_sites.fract_transf_matrix[1][1]    0.015258 
_atom_sites.fract_transf_matrix[1][2]    0.008809 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1IBM A 1 4000 4000 A1IBM LIG . 
D 4 HOH A 1 4101 9 HOH HOH . 
D 4 HOH A 2 4102 16 HOH HOH . 
D 4 HOH A 3 4103 13 HOH HOH . 
D 4 HOH A 4 4104 6 HOH HOH . 
D 4 HOH A 5 4105 18 HOH HOH . 
D 4 HOH A 6 4106 1 HOH HOH . 
D 4 HOH A 7 4107 3 HOH HOH . 
D 4 HOH A 8 4108 22 HOH HOH . 
D 4 HOH A 9 4109 2 HOH HOH . 
D 4 HOH A 10 4110 17 HOH HOH . 
D 4 HOH A 11 4111 11 HOH HOH . 
D 4 HOH A 12 4112 15 HOH HOH . 
D 4 HOH A 13 4113 19 HOH HOH . 
D 4 HOH A 14 4114 21 HOH HOH . 
D 4 HOH A 15 4115 20 HOH HOH . 
D 4 HOH A 16 4116 5 HOH HOH . 
D 4 HOH A 17 4117 10 HOH HOH . 
D 4 HOH A 18 4118 7 HOH HOH . 
D 4 HOH A 19 4119 8 HOH HOH . 
E 4 HOH B 1 801 12 HOH HOH . 
E 4 HOH B 2 802 4 HOH HOH . 
E 4 HOH B 3 803 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 A1IBM . . . C 3 28.842 -17.01 -4.824 1 68.62 ? C4 A1IBM 4000 A 1 
HETATM 2 C C5 A1IBM . . . C 3 28.022 -16.406 -5.991 1 73.2 ? C5 A1IBM 4000 A 1 
HETATM 3 C C6 A1IBM . . . C 3 28.588 -15.004 -6.236 1 76.88 ? C6 A1IBM 4000 A 1 
HETATM 4 C C7 A1IBM . . . C 3 28.06 -18.28 -4.447 1 69.33 ? C7 A1IBM 4000 A 1 
HETATM 5 C C8 A1IBM . . . C 3 26.583 -17.919 -4.74 1 72.46 ? C8 A1IBM 4000 A 1 
HETATM 6 C C10 A1IBM . . . C 3 28.202 -17.284 -7.243 1 68.33 ? C10 A1IBM 4000 A 1 
HETATM 7 C C13 A1IBM . . . C 3 24.141 -15.897 -5.298 1 89.62 ? C13 A1IBM 4000 A 1 
HETATM 8 C C15 A1IBM . . . C 3 24.614 -16.759 -8.599 1 74.52 ? C15 A1IBM 4000 A 1 
HETATM 9 C C17 A1IBM . . . C 3 23.151 -17.8 -10.483 1 75.72 ? C17 A1IBM 4000 A 1 
HETATM 10 C C21 A1IBM . . . C 3 23.443 -14.571 -5.195 1 93.95 ? C21 A1IBM 4000 A 1 
HETATM 11 C C22 A1IBM . . . C 3 23.065 -14.002 -3.815 1 95.75 ? C22 A1IBM 4000 A 1 
HETATM 12 C C24 A1IBM . . . C 3 20.823 -14.548 -2.614 1 90.55 ? C24 A1IBM 4000 A 1 
HETATM 13 C C26 A1IBM . . . C 3 20.459 -13.134 -3.039 1 92.86 ? C26 A1IBM 4000 A 1 
HETATM 14 C C28 A1IBM . . . C 3 32.438 -18.247 -5.228 1 60.75 ? C28 A1IBM 4000 A 1 
HETATM 15 C C1 A1IBM . . . C 3 30.085 -15.016 -6.527 1 73.01 ? C1 A1IBM 4000 A 1 
HETATM 16 C C11 A1IBM . . . C 3 31.057 -18.173 -5.068 1 61.06 ? C11 A1IBM 4000 A 1 
HETATM 17 C C12 A1IBM . . . C 3 25.349 -16.178 -6.171 1 83.33 ? C12 A1IBM 4000 A 1 
HETATM 18 C C14 A1IBM . . . C 3 25.024 -17.25 -7.221 1 77.54 ? C14 A1IBM 4000 A 1 
HETATM 19 C C16 A1IBM . . . C 3 24.363 -17.919 -9.558 1 71.44 ? C16 A1IBM 4000 A 1 
HETATM 20 C C18 A1IBM . . . C 3 23.035 -19.044 -11.353 1 71.65 ? C18 A1IBM 4000 A 1 
HETATM 21 C C19 A1IBM . . . C 3 23.226 -16.542 -11.342 1 76.95 ? C19 A1IBM 4000 A 1 
HETATM 22 C C2 A1IBM . . . C 3 30.864 -15.676 -5.393 1 68.51 ? C2 A1IBM 4000 A 1 
HETATM 23 C C23 A1IBM . . . C 3 22.324 -14.814 -2.745 1 89.19 ? C23 A1IBM 4000 A 1 
HETATM 24 C C25 A1IBM . . . C 3 20.325 -14.853 -1.211 1 88.31 ? C25 A1IBM 4000 A 1 
HETATM 25 C C29 A1IBM . . . C 3 33.207 -19.354 -5.386 1 63.36 ? C29 A1IBM 4000 A 1 
HETATM 26 C C3 A1IBM . . . C 3 30.329 -17.045 -5.104 1 65.74 ? C3 A1IBM 4000 A 1 
HETATM 27 C C30 A1IBM . . . C 3 34.707 -19.199 -5.516 1 65.41 ? C30 A1IBM 4000 A 1 
HETATM 28 C C31 A1IBM . . . C 3 35.598 -20.374 -5.153 1 67.29 ? C31 A1IBM 4000 A 1 
HETATM 29 C C32 A1IBM . . . C 3 34.995 -21.659 -5.676 1 64.76 ? C32 A1IBM 4000 A 1 
HETATM 30 C C33 A1IBM . . . C 3 33.595 -21.847 -5.118 1 64.66 ? C33 A1IBM 4000 A 1 
HETATM 31 C C34 A1IBM . . . C 3 32.697 -20.712 -5.545 1 64.31 ? C34 A1IBM 4000 A 1 
HETATM 32 C C35 A1IBM . . . C 3 31.515 -20.98 -6.071 1 63.81 ? C35 A1IBM 4000 A 1 
HETATM 33 C C38 A1IBM . . . C 3 22.734 -15.747 -5.801 1 89.16 ? C38 A1IBM 4000 A 1 
HETATM 34 C C9 A1IBM . . . C 3 26.617 -16.5 -5.349 1 75.37 ? C9 A1IBM 4000 A 1 
HETATM 35 O O20 A1IBM . . . C 3 21.957 -17.706 -9.68 1 71.72 ? O20 A1IBM 4000 A 1 
HETATM 36 O O27 A1IBM . . . C 3 20.145 -15.439 -3.517 1 87.7 ? O27 A1IBM 4000 A 1 
HETATM 37 O O36 A1IBM . . . C 3 33.037 -23.061 -5.61 1 64.61 ? O36 A1IBM 4000 A 1 
HETATM 38 O O37 A1IBM . . . C 3 35.743 -20.468 -3.732 1 67.79 ? O37 A1IBM 4000 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#