data_9FCF # _model_server_result.job_id 8Z3U9cuCMVpgbuPWXtjCIw _model_server_result.datetime_utc '2024-11-01 00:46:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9FCF # _exptl.entry_id 9FCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 577.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FCF _cell.length_a 91.301 _cell.length_b 91.301 _cell.length_c 35.836 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall 'P 4' _symmetry.space_group_name_H-M 'P 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 27 A GLN 65 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A O ILE 28 A ILE 66 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc3 A OE2 GLU 197 A GLU 235 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 B O4P GUO . A GUO 401 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? # _chem_comp.formula 'C15 H25 N5 O15 P2' _chem_comp.formula_weight 577.331 _chem_comp.id GUO _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P1 GUO doub 129 n n O3P P1 GUO sing 130 n n P1 O5P GUO sing 131 n n P1 O4P GUO sing 132 n n O5P C6 GUO sing 133 n n C6 C9 GUO sing 134 n n C6 H6 GUO sing 135 n n C6 H6A GUO sing 136 n n C12 C9 GUO sing 137 n n O11 C9 GUO sing 138 n n C9 H9 GUO sing 139 n n C20 O11 GUO sing 140 n n C16 C12 GUO sing 141 n n C12 O14 GUO sing 142 n n C12 H12 GUO sing 143 n n O14 HO14 GUO sing 144 n n O18 C16 GUO sing 145 n n C16 C20 GUO sing 146 n n C16 H16 GUO sing 147 n n O18 HO18 GUO sing 148 n n N22 C20 GUO sing 149 n n C20 H20 GUO sing 150 n n N22 C24 GUO sing 151 n n N22 HN22 GUO sing 152 n n C24 N26 GUO doub 153 n n C24 H24 GUO sing 154 n n N26 C27 GUO sing 155 n n C28 C27 GUO doub 156 n y C27 N37 GUO sing 157 n y C29 C28 GUO sing 158 n n C28 N34 GUO sing 159 n y N31 C29 GUO sing 160 n n C29 O30 GUO doub 161 n n N31 HN31 GUO sing 162 n n N31 HN3A GUO sing 163 n n N34 C35 GUO doub 164 n y C35 N37 GUO sing 165 n y C35 H35 GUO sing 166 n n N37 C38 GUO sing 167 n n O40 C38 GUO sing 168 n n C38 C41 GUO sing 169 n n C38 H38 GUO sing 170 n n O3P HO3P GUO sing 171 n n O40 C49 GUO sing 172 n n C45 C41 GUO sing 173 n n C41 O43 GUO sing 174 n n C41 H41 GUO sing 175 n n O43 HO43 GUO sing 176 n n C49 C45 GUO sing 177 n n C45 O47 GUO sing 178 n n C45 H45 GUO sing 179 n n O47 HO47 GUO sing 180 n n C51 C49 GUO sing 181 n n C49 H49 GUO sing 182 n n O4P HO4P GUO sing 183 n n C51 O54 GUO sing 184 n n C51 H51 GUO sing 185 n n C51 H51A GUO sing 186 n n P55 O54 GUO sing 187 n n O56 P55 GUO doub 188 n n O58 P55 GUO sing 189 n n P55 O57 GUO sing 190 n n O57 HO57 GUO sing 191 n n O58 HO58 GUO sing 192 n n # _atom_sites.entry_id 9FCF _atom_sites.fract_transf_matrix[1][1] 0.010953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GUO A 1 401 401 GUO GUO . C 3 NA A 1 402 1 NA NA . D 4 CL A 1 403 1 CL CL . E 5 HOH A 1 501 3 HOH HOH . E 5 HOH A 2 502 5 HOH HOH . E 5 HOH A 3 503 6 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 GUO . . . B 2 18.407 18.511 -7.906 1 35.63 ? P1 GUO 401 A 1 HETATM 2 C C6 GUO . . . B 2 16.743 19.261 -6.011 1 38.06 ? C6 GUO 401 A 1 HETATM 3 C C9 GUO . . . B 2 16.367 20.452 -5.145 1 41.68 ? C9 GUO 401 A 1 HETATM 4 O O11 GUO . . . B 2 15.153 21.165 -5.607 1 50.11 ? O11 GUO 401 A 1 HETATM 5 C C12 GUO . . . B 2 16.057 20.011 -3.709 1 41.74 ? C12 GUO 401 A 1 HETATM 6 O O14 GUO . . . B 2 16.412 21.12 -2.825 1 38.87 ? O14 GUO 401 A 1 HETATM 7 C C16 GUO . . . B 2 14.542 19.974 -3.77 1 44.52 ? C16 GUO 401 A 1 HETATM 8 O O18 GUO . . . B 2 13.88 19.864 -2.473 1 48.81 ? O18 GUO 401 A 1 HETATM 9 C C20 GUO . . . B 2 14.343 21.327 -4.423 1 45.19 ? C20 GUO 401 A 1 HETATM 10 N N22 GUO . . . B 2 12.971 21.725 -4.587 1 43.43 ? N22 GUO 401 A 1 HETATM 11 C C24 GUO . . . B 2 12.69 23.037 -4.749 1 44.64 ? C24 GUO 401 A 1 HETATM 12 N N26 GUO . . . B 2 11.473 23.407 -4.871 1 42.28 ? N26 GUO 401 A 1 HETATM 13 C C27 GUO . . . B 2 11.003 24.684 -5.074 1 40.51 ? C27 GUO 401 A 1 HETATM 14 C C28 GUO . . . B 2 10.29 25.077 -6.255 1 40.46 ? C28 GUO 401 A 1 HETATM 15 C C29 GUO . . . B 2 9.99 24.196 -7.5 1 42.8 ? C29 GUO 401 A 1 HETATM 16 O O2P GUO . . . B 2 19.672 17.764 -7.491 1 38.7 ? O2P GUO 401 A 1 HETATM 17 O O30 GUO . . . B 2 10.44 23.065 -7.538 1 44.85 ? O30 GUO 401 A 1 HETATM 18 N N31 GUO . . . B 2 9.287 24.71 -8.506 1 39.75 ? N31 GUO 401 A 1 HETATM 19 N N34 GUO . . . B 2 9.947 26.344 -6.127 1 39.97 ? N34 GUO 401 A 1 HETATM 20 C C35 GUO . . . B 2 10.388 26.772 -4.923 1 40.59 ? C35 GUO 401 A 1 HETATM 21 N N37 GUO . . . B 2 11.009 25.785 -4.274 1 39.6 ? N37 GUO 401 A 1 HETATM 22 C C38 GUO . . . B 2 11.622 25.994 -2.932 1 41.42 ? C38 GUO 401 A 1 HETATM 23 O O3P GUO . . . B 2 18.712 19.271 -9.196 1 36.85 ? O3P GUO 401 A 1 HETATM 24 O O40 GUO . . . B 2 10.663 26.122 -1.907 1 41.37 ? O40 GUO 401 A 1 HETATM 25 C C41 GUO . . . B 2 12.293 27.376 -2.975 1 41.33 ? C41 GUO 401 A 1 HETATM 26 O O43 GUO . . . B 2 13.46 27.409 -3.716 1 38.78 ? O43 GUO 401 A 1 HETATM 27 C C45 GUO . . . B 2 12.494 27.665 -1.518 1 38.47 ? C45 GUO 401 A 1 HETATM 28 O O47 GUO . . . B 2 13.654 26.995 -1.017 1 37.29 ? O47 GUO 401 A 1 HETATM 29 C C49 GUO . . . B 2 11.244 27.022 -0.906 1 39.42 ? C49 GUO 401 A 1 HETATM 30 O O4P GUO . . . B 2 17.277 17.515 -8.191 1 39.36 ? O4P GUO 401 A 1 HETATM 31 C C51 GUO . . . B 2 10.253 28.079 -0.448 1 38 ? C51 GUO 401 A 1 HETATM 32 O O54 GUO . . . B 2 10.039 29.074 -1.45 1 38.59 ? O54 GUO 401 A 1 HETATM 33 P P55 GUO . . . B 2 8.79 30.06 -1.251 1 41.2 ? P55 GUO 401 A 1 HETATM 34 O O56 GUO . . . B 2 7.504 29.246 -1.177 1 37.84 ? O56 GUO 401 A 1 HETATM 35 O O57 GUO . . . B 2 8.747 31.001 -2.445 1 40.7 ? O57 GUO 401 A 1 HETATM 36 O O58 GUO . . . B 2 8.922 30.829 0.04 1 37.49 ? O58 GUO 401 A 1 HETATM 37 O O5P GUO . . . B 2 17.955 19.514 -6.728 1 31.82 ? O5P GUO 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #