data_9FCL # _model_server_result.job_id ctgLxXfY33SOuspFZSp8IQ _model_server_result.datetime_utc '2024-10-11 08:31:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fcl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 9FCL # _exptl.entry_id 9FCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FCL _cell.length_a 101.54 _cell.length_b 101.54 _cell.length_c 49.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 177 A ASP 191 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc2 C CA CA . A CA 902 1_555 O O HOH . A HOH 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 C CA CA . A CA 902 1_555 O O HOH . A HOH 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc4 C CA CA . A CA 902 1_555 O O HOH . A HOH 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 302 n n N HN1 SAM sing 303 n n N HN2 SAM sing 304 n n CA C SAM sing 305 n n CA CB SAM sing 306 n n CA HA SAM sing 307 n n C O SAM doub 308 n n C OXT SAM sing 309 n n CB CG SAM sing 310 n n CB HB1 SAM sing 311 n n CB HB2 SAM sing 312 n n CG SD SAM sing 313 n n CG HG1 SAM sing 314 n n CG HG2 SAM sing 315 n n SD CE SAM sing 316 n n SD C5' SAM sing 317 n n CE HE1 SAM sing 318 n n CE HE2 SAM sing 319 n n CE HE3 SAM sing 320 n n C5' C4' SAM sing 321 n n C5' "H5'1" SAM sing 322 n n C5' "H5'2" SAM sing 323 n n C4' O4' SAM sing 324 n n C4' C3' SAM sing 325 n n C4' H4' SAM sing 326 n n O4' C1' SAM sing 327 n n C3' O3' SAM sing 328 n n C3' C2' SAM sing 329 n n C3' H3' SAM sing 330 n n O3' HO3' SAM sing 331 n n C2' O2' SAM sing 332 n n C2' C1' SAM sing 333 n n C2' H2' SAM sing 334 n n O2' HO2' SAM sing 335 n n C1' N9 SAM sing 336 n n C1' H1' SAM sing 337 n n N9 C8 SAM sing 338 n y N9 C4 SAM sing 339 n y C8 N7 SAM doub 340 n y C8 H8 SAM sing 341 n n N7 C5 SAM sing 342 n y C5 C6 SAM sing 343 n y C5 C4 SAM doub 344 n y C6 N6 SAM sing 345 n n C6 N1 SAM doub 346 n y N6 HN61 SAM sing 347 n n N6 HN62 SAM sing 348 n n N1 C2 SAM sing 349 n y C2 N3 SAM doub 350 n y C2 H2 SAM sing 351 n n N3 C4 SAM sing 352 n y # _atom_sites.entry_id 9FCL _atom_sites.fract_transf_matrix[1][1] 0.009848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 901 901 SAM SAM . C 3 CA A 1 902 902 CA CA . D 4 EDO A 1 903 1 EDO EDO . E 4 EDO A 1 904 2 EDO EDO . F 4 EDO A 1 905 3 EDO EDO . G 4 EDO A 1 906 4 EDO EDO . H 4 EDO A 1 907 5 EDO EDO . I 4 EDO A 1 908 6 EDO EDO . J 4 EDO A 1 909 7 EDO EDO . K 4 EDO A 1 910 8 EDO EDO . L 4 EDO A 1 911 9 EDO EDO . M 5 PEG A 1 912 10 PEG PEG . N 5 PEG A 1 913 11 PEG PEG . O 6 HOH A 1 1001 61 HOH HOH . O 6 HOH A 2 1002 72 HOH HOH . O 6 HOH A 3 1003 40 HOH HOH . O 6 HOH A 4 1004 98 HOH HOH . O 6 HOH A 5 1005 12 HOH HOH . O 6 HOH A 6 1006 27 HOH HOH . O 6 HOH A 7 1007 28 HOH HOH . O 6 HOH A 8 1008 39 HOH HOH . O 6 HOH A 9 1009 31 HOH HOH . O 6 HOH A 10 1010 112 HOH HOH . O 6 HOH A 11 1011 114 HOH HOH . O 6 HOH A 12 1012 26 HOH HOH . O 6 HOH A 13 1013 59 HOH HOH . O 6 HOH A 14 1014 25 HOH HOH . O 6 HOH A 15 1015 124 HOH HOH . O 6 HOH A 16 1016 36 HOH HOH . O 6 HOH A 17 1017 47 HOH HOH . O 6 HOH A 18 1018 18 HOH HOH . O 6 HOH A 19 1019 16 HOH HOH . O 6 HOH A 20 1020 111 HOH HOH . O 6 HOH A 21 1021 48 HOH HOH . O 6 HOH A 22 1022 24 HOH HOH . O 6 HOH A 23 1023 122 HOH HOH . O 6 HOH A 24 1024 121 HOH HOH . O 6 HOH A 25 1025 41 HOH HOH . O 6 HOH A 26 1026 109 HOH HOH . O 6 HOH A 27 1027 32 HOH HOH . O 6 HOH A 28 1028 29 HOH HOH . O 6 HOH A 29 1029 22 HOH HOH . O 6 HOH A 30 1030 50 HOH HOH . O 6 HOH A 31 1031 104 HOH HOH . O 6 HOH A 32 1032 116 HOH HOH . O 6 HOH A 33 1033 53 HOH HOH . O 6 HOH A 34 1034 13 HOH HOH . O 6 HOH A 35 1035 115 HOH HOH . O 6 HOH A 36 1036 17 HOH HOH . O 6 HOH A 37 1037 57 HOH HOH . O 6 HOH A 38 1038 83 HOH HOH . O 6 HOH A 39 1039 119 HOH HOH . O 6 HOH A 40 1040 70 HOH HOH . O 6 HOH A 41 1041 49 HOH HOH . O 6 HOH A 42 1042 38 HOH HOH . O 6 HOH A 43 1043 78 HOH HOH . O 6 HOH A 44 1044 46 HOH HOH . O 6 HOH A 45 1045 68 HOH HOH . O 6 HOH A 46 1046 15 HOH HOH . O 6 HOH A 47 1047 51 HOH HOH . O 6 HOH A 48 1048 113 HOH HOH . O 6 HOH A 49 1049 37 HOH HOH . O 6 HOH A 50 1050 63 HOH HOH . O 6 HOH A 51 1051 74 HOH HOH . O 6 HOH A 52 1052 54 HOH HOH . O 6 HOH A 53 1053 21 HOH HOH . O 6 HOH A 54 1054 120 HOH HOH . O 6 HOH A 55 1055 58 HOH HOH . O 6 HOH A 56 1056 42 HOH HOH . O 6 HOH A 57 1057 30 HOH HOH . O 6 HOH A 58 1058 90 HOH HOH . O 6 HOH A 59 1059 96 HOH HOH . O 6 HOH A 60 1060 123 HOH HOH . O 6 HOH A 61 1061 95 HOH HOH . O 6 HOH A 62 1062 118 HOH HOH . O 6 HOH A 63 1063 20 HOH HOH . O 6 HOH A 64 1064 23 HOH HOH . O 6 HOH A 65 1065 106 HOH HOH . O 6 HOH A 66 1066 52 HOH HOH . O 6 HOH A 67 1067 33 HOH HOH . O 6 HOH A 68 1068 107 HOH HOH . O 6 HOH A 69 1069 117 HOH HOH . O 6 HOH A 70 1070 71 HOH HOH . O 6 HOH A 71 1071 101 HOH HOH . O 6 HOH A 72 1072 80 HOH HOH . O 6 HOH A 73 1073 108 HOH HOH . O 6 HOH A 74 1074 110 HOH HOH . O 6 HOH A 75 1075 45 HOH HOH . O 6 HOH A 76 1076 102 HOH HOH . O 6 HOH A 77 1077 105 HOH HOH . O 6 HOH A 78 1078 100 HOH HOH . O 6 HOH A 79 1079 66 HOH HOH . O 6 HOH A 80 1080 94 HOH HOH . O 6 HOH A 81 1081 76 HOH HOH . O 6 HOH A 82 1082 89 HOH HOH . O 6 HOH A 83 1083 92 HOH HOH . O 6 HOH A 84 1084 97 HOH HOH . O 6 HOH A 85 1085 79 HOH HOH . O 6 HOH A 86 1086 103 HOH HOH . O 6 HOH A 87 1087 75 HOH HOH . O 6 HOH A 88 1088 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 25.283 -1.82 9.283 1 32.88 ? N SAM 901 A 1 HETATM 2 C CA SAM . . . B 2 24.776 -0.524 8.735 1 34.93 ? CA SAM 901 A 1 HETATM 3 C C SAM . . . B 2 23.483 -0.762 7.947 1 33.5 ? C SAM 901 A 1 HETATM 4 O O SAM . . . B 2 23.01 -1.886 7.816 1 34.81 ? O SAM 901 A 1 HETATM 5 O OXT SAM . . . B 2 22.889 0.183 7.425 1 33.47 ? OXT SAM 901 A 1 HETATM 6 C CB SAM . . . B 2 25.814 0.147 7.827 1 36.48 ? CB SAM 901 A 1 HETATM 7 C CG SAM . . . B 2 26.208 -0.63 6.58 1 34.23 ? CG SAM 901 A 1 HETATM 8 S SD SAM . . . B 2 27.343 0.405 5.613 1 34.22 ? SD SAM 901 A 1 HETATM 9 C CE SAM . . . B 2 26.907 -0.024 3.934 1 49.27 ? CE SAM 901 A 1 HETATM 10 C C5' SAM . . . B 2 28.905 -0.462 5.911 1 31.36 ? C5' SAM 901 A 1 HETATM 11 C C4' SAM . . . B 2 29.506 -0.064 7.248 1 31.04 ? C4' SAM 901 A 1 HETATM 12 O O4' SAM . . . B 2 30.674 -0.875 7.513 1 32.69 ? O4' SAM 901 A 1 HETATM 13 C C3' SAM . . . B 2 29.971 1.391 7.351 1 30.6 ? C3' SAM 901 A 1 HETATM 14 O O3' SAM . . . B 2 29.488 1.973 8.557 1 30.93 ? O3' SAM 901 A 1 HETATM 15 C C2' SAM . . . B 2 31.5 1.287 7.345 1 30.6 ? C2' SAM 901 A 1 HETATM 16 O O2' SAM . . . B 2 32.126 2.329 8.064 1 29.12 ? O2' SAM 901 A 1 HETATM 17 C C1' SAM . . . B 2 31.689 -0.054 8.038 1 29.9 ? C1' SAM 901 A 1 HETATM 18 N N9 SAM . . . B 2 32.962 -0.713 7.785 1 30.15 ? N9 SAM 901 A 1 HETATM 19 C C8 SAM . . . B 2 33.485 -1.071 6.568 1 31.82 ? C8 SAM 901 A 1 HETATM 20 N N7 SAM . . . B 2 34.639 -1.689 6.66 1 34.73 ? N7 SAM 901 A 1 HETATM 21 C C5 SAM . . . B 2 34.879 -1.767 8.023 1 31.28 ? C5 SAM 901 A 1 HETATM 22 C C6 SAM . . . B 2 35.942 -2.314 8.769 1 32.15 ? C6 SAM 901 A 1 HETATM 23 N N6 SAM . . . B 2 36.993 -2.923 8.226 1 33.85 ? N6 SAM 901 A 1 HETATM 24 N N1 SAM . . . B 2 35.869 -2.225 10.12 1 29.79 ? N1 SAM 901 A 1 HETATM 25 C C2 SAM . . . B 2 34.808 -1.609 10.664 1 28.92 ? C2 SAM 901 A 1 HETATM 26 N N3 SAM . . . B 2 33.753 -1.063 10.066 1 27.63 ? N3 SAM 901 A 1 HETATM 27 C C4 SAM . . . B 2 33.849 -1.175 8.728 1 29.84 ? C4 SAM 901 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #